Wall clock time and date at job start Tue Mar 31 2020 15:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53002 * 109.47067 * 240.00128 * 2 1 3 5 5 C 1.50696 * 109.47123 * 59.99900 * 4 2 1 6 6 H 1.08003 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00201 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99572 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47409 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47245 * 120.00093 * 9 7 5 12 12 H 1.48504 * 109.46962 * 239.99756 * 9 7 5 13 13 C 1.52996 * 109.47168 * 120.00191 * 2 1 3 14 14 N 1.46498 * 109.47129 * 299.99708 * 13 2 1 15 15 C 1.34773 * 120.00222 * 179.97438 * 14 13 2 16 16 O 1.21557 * 119.99878 * 0.02562 * 15 14 13 17 17 C 1.47934 * 120.00259 * 179.97438 * 15 14 13 18 18 C 1.38254 * 119.24171 * 180.02562 * 17 15 14 19 19 C 1.40695 * 118.65441 * 180.02562 * 18 17 15 20 20 C 1.40231 * 122.06290 * 179.97438 * 19 18 17 21 21 C 1.36310 * 119.48328 * 180.02562 * 20 19 18 22 22 C 1.39252 * 120.94229 * 0.02562 * 21 20 19 23 23 C 1.36360 * 121.06078 * 359.97438 * 22 21 20 24 24 C 1.40039 * 119.58964 * 0.25780 * 23 22 21 25 25 C 1.41345 * 121.85457 * 180.24227 * 24 23 22 26 26 O 1.35503 * 119.95143 * 359.52399 * 25 24 23 27 27 N 1.31386 * 120.10134 * 179.75034 * 25 24 23 28 28 H 1.09006 * 109.47522 * 299.99919 * 1 2 3 29 29 H 1.08998 * 109.47730 * 59.99784 * 1 2 3 30 30 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47088 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47110 * 299.99680 * 3 2 1 33 33 H 1.09001 * 109.47117 * 60.00402 * 3 2 1 34 34 H 1.08998 * 109.47141 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.46986 * 299.99889 * 4 2 1 36 36 H 0.97004 * 119.99554 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47048 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47459 * 60.00134 * 13 2 1 39 39 H 0.97000 * 120.00441 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.67582 * 0.04975 * 18 17 15 41 41 H 1.08001 * 120.26005 * 0.05358 * 20 19 18 42 42 H 1.07998 * 119.53113 * 179.97438 * 21 20 19 43 43 H 1.08006 * 119.46466 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.20249 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99445 * 270.23067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2481 0.3989 -5.2572 10 1 0.4235 1.5659 -4.8530 11 1 2.4034 0.8646 -6.0656 12 1 0.4224 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6694 16 8 2.5757 -1.4798 3.7809 17 6 1.3843 0.2063 4.8773 18 6 1.7279 -0.2796 6.1252 19 6 1.2522 0.3932 7.2657 20 6 1.5562 -0.0377 8.5651 21 6 1.0666 0.6538 9.6329 22 6 0.2691 1.7808 9.4514 23 6 -0.0453 2.2264 8.2016 24 6 0.4358 1.5383 7.0808 25 6 0.1436 1.9608 5.7640 26 8 -0.6298 3.0546 5.5604 27 7 0.6172 1.2919 4.7371 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 2.8606 -1.8828 -4.7337 37 1 3.1299 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2492 39 1 0.9937 0.7578 2.3565 40 1 2.3492 -1.1577 6.2227 41 1 2.1737 -0.9103 8.7186 42 1 1.2999 0.3224 10.6339 43 1 -0.1057 2.3110 10.3146 44 1 -0.6653 3.1019 8.0770 45 1 -1.5756 2.8619 5.5009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345912962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:34 Heat of formation + Delta-G solvation = -37.058612 kcal Electronic energy + Delta-G solvation = -26980.058325 eV Core-core repulsion = 23155.191050 eV Total energy + Delta-G solvation = -3824.867275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44137 -39.55359 -38.29902 -37.31085 -36.64286 -33.65774 -32.67038 -32.11126 -31.53343 -29.88663 -27.16323 -26.49142 -26.44619 -24.56587 -24.39985 -22.78156 -22.54142 -20.85842 -19.31004 -18.42601 -18.22567 -17.71057 -16.80939 -16.30180 -16.16929 -15.75488 -15.36856 -15.10292 -14.72500 -14.49300 -14.39362 -13.96524 -13.87876 -13.49376 -13.38428 -13.03870 -12.70807 -12.40058 -12.37861 -12.11062 -12.03430 -12.00704 -11.66021 -11.11395 -10.98412 -10.80949 -10.60019 -10.51017 -10.39786 -10.37081 -10.20806 -9.83698 -9.68614 -9.58772 -9.13913 -8.88344 -8.74709 -8.38091 -8.33554 -5.97525 -3.98309 -0.19410 0.28005 1.38799 2.17608 3.02671 3.12708 3.32202 3.34119 3.40305 3.43339 3.71761 4.13001 4.15858 4.33453 4.45448 4.48813 4.60982 4.73357 4.90277 5.02084 5.27171 5.33434 5.38177 5.47962 5.49348 5.57849 5.66348 5.81474 5.89604 5.92951 6.02574 6.24547 6.28141 6.30568 6.31777 6.44711 6.59064 6.69108 6.79871 7.04883 7.10997 7.12277 7.16450 7.38202 7.67177 7.79569 7.80487 8.01656 8.35327 8.44412 9.06656 9.64613 11.14007 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.002290 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.221984 B =12221.495207 C =13014.819600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.125 3.875 14 N -0.697 5.697 15 C 0.562 3.438 16 O -0.539 6.539 17 C 0.085 3.915 18 C -0.095 4.095 19 C -0.022 4.022 20 C -0.103 4.103 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.109 4.109 25 C 0.353 3.647 26 O -0.472 6.472 27 N -0.483 5.483 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.410 0.590 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 6.866 28.698 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.186 4.186 4 C -0.002 4.002 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.002 3.998 14 N -0.348 5.348 15 C 0.346 3.654 16 O -0.417 6.417 17 C -0.040 4.040 18 C -0.116 4.116 19 C -0.027 4.027 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.133 4.133 23 C -0.102 4.102 24 C -0.113 4.113 25 C 0.158 3.842 26 O -0.280 6.280 27 N -0.204 5.204 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.247 0.753 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.012 6.550 27.703 29.094 hybrid contribution -0.821 0.399 -0.222 0.940 sum -6.833 6.949 27.481 29.158 Atomic orbital electron populations 1.21769 0.95234 1.01119 1.00404 1.20902 0.95555 0.95914 0.94861 1.21773 1.00502 0.95871 1.00442 1.19101 0.96380 0.95221 0.89473 1.21228 1.30988 1.12010 0.90480 0.92171 1.25023 0.95377 0.95112 0.99105 1.69980 1.37077 1.23098 1.23280 0.86586 0.78584 0.79679 0.83431 1.19791 1.21159 1.21173 1.21734 0.99106 0.96117 0.82807 1.46091 1.51747 1.31741 1.05195 1.17792 0.80784 0.83845 0.82960 1.90796 1.38455 1.25937 1.86508 1.20718 0.96948 0.92281 0.94083 1.22226 0.98354 1.00363 0.90691 1.18077 0.96118 0.94104 0.94395 1.21062 1.00018 1.00313 0.90725 1.21057 0.96317 0.94928 0.99370 1.21025 0.98143 0.96703 0.97478 1.20962 0.98845 0.99047 0.91351 1.19058 1.01121 0.96727 0.94384 1.19111 0.92617 0.86026 0.86420 1.84739 1.22218 1.26791 1.94218 1.66861 1.11156 1.06409 1.35970 0.95064 0.91388 0.93404 0.93388 0.91390 0.95003 0.96296 0.96304 0.93136 0.91498 0.91497 0.75268 0.82501 0.84406 0.85151 0.85233 0.84415 0.73666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 2 C -0.07 -1.42 0.54 -154.51 -0.08 -1.50 16 3 C -0.13 -2.40 8.05 37.16 0.30 -2.10 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.95 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.12 2.31 4.56 -4.05 -0.02 2.30 16 14 N -0.70 -11.46 4.95 -61.23 -0.30 -11.77 16 15 C 0.56 9.32 7.80 -12.29 -0.10 9.23 16 16 O -0.54 -10.26 16.27 5.32 0.09 -10.18 16 17 C 0.09 1.19 6.73 -83.09 -0.56 0.63 16 18 C -0.10 -1.12 9.41 -38.65 -0.36 -1.48 16 19 C -0.02 -0.22 5.74 -106.84 -0.61 -0.83 16 20 C -0.10 -0.75 9.81 -39.53 -0.39 -1.14 16 21 C -0.10 -0.56 9.95 -39.90 -0.40 -0.95 16 22 C -0.12 -0.65 9.95 -39.88 -0.40 -1.04 16 23 C -0.08 -0.57 9.58 -39.58 -0.38 -0.95 16 24 C -0.11 -1.05 5.76 -106.66 -0.61 -1.66 16 25 C 0.35 3.83 7.80 -16.56 -0.13 3.70 16 26 O -0.47 -3.99 12.83 -18.20 -0.23 -4.22 16 27 N -0.48 -6.39 9.47 -9.60 -0.09 -6.48 16 28 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 29 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 33 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.41 6.33 5.46 -40.82 -0.22 6.11 16 40 H 0.16 1.70 7.59 -52.48 -0.40 1.30 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 44 H 0.14 0.69 7.65 -52.49 -0.40 0.29 16 45 H 0.40 1.38 9.06 45.56 0.41 1.80 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -33.58 372.26 -8.38 -41.96 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.25 Total: 4.16 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.91 Total: -9.60 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.34 Total: -44.15 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.15 Total: -14.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.58 -8.38 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345912962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.897 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds