Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53002 * 109.47067 * 240.00128 * 2 1 3 5 5 C 1.50696 * 109.47123 * 59.99900 * 4 2 1 6 6 H 1.08003 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00201 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99572 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47409 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47245 * 120.00093 * 9 7 5 12 12 H 1.48504 * 109.46962 * 239.99756 * 9 7 5 13 13 C 1.52996 * 109.47168 * 120.00191 * 2 1 3 14 14 N 1.46498 * 109.47129 * 299.99708 * 13 2 1 15 15 C 1.34773 * 120.00222 * 179.97438 * 14 13 2 16 16 O 1.21557 * 119.99878 * 0.02562 * 15 14 13 17 17 C 1.47934 * 120.00259 * 179.97438 * 15 14 13 18 18 C 1.38254 * 119.24171 * 180.02562 * 17 15 14 19 19 C 1.40695 * 118.65441 * 180.02562 * 18 17 15 20 20 C 1.40231 * 122.06290 * 179.97438 * 19 18 17 21 21 C 1.36310 * 119.48328 * 180.02562 * 20 19 18 22 22 C 1.39252 * 120.94229 * 0.02562 * 21 20 19 23 23 C 1.36360 * 121.06078 * 359.97438 * 22 21 20 24 24 C 1.40039 * 119.58964 * 0.25780 * 23 22 21 25 25 C 1.41345 * 121.85457 * 180.24227 * 24 23 22 26 26 O 1.35503 * 119.95143 * 359.52399 * 25 24 23 27 27 N 1.31386 * 120.10134 * 179.75034 * 25 24 23 28 28 H 1.09006 * 109.47522 * 299.99919 * 1 2 3 29 29 H 1.08998 * 109.47730 * 59.99784 * 1 2 3 30 30 H 1.09004 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47088 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47110 * 299.99680 * 3 2 1 33 33 H 1.09001 * 109.47117 * 60.00402 * 3 2 1 34 34 H 1.08998 * 109.47141 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.46986 * 299.99889 * 4 2 1 36 36 H 0.97004 * 119.99554 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47048 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47459 * 60.00134 * 13 2 1 39 39 H 0.97000 * 120.00441 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.67582 * 0.04975 * 18 17 15 41 41 H 1.08001 * 120.26005 * 0.05358 * 20 19 18 42 42 H 1.07998 * 119.53113 * 179.97438 * 21 20 19 43 43 H 1.08006 * 119.46466 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.20249 * 179.97438 * 23 22 21 45 45 H 0.96704 * 113.99445 * 270.23067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2481 0.3989 -5.2572 10 1 0.4235 1.5659 -4.8530 11 1 2.4034 0.8646 -6.0656 12 1 0.4224 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6694 16 8 2.5757 -1.4798 3.7809 17 6 1.3843 0.2063 4.8773 18 6 1.7279 -0.2796 6.1252 19 6 1.2522 0.3932 7.2657 20 6 1.5562 -0.0377 8.5651 21 6 1.0666 0.6538 9.6329 22 6 0.2691 1.7808 9.4514 23 6 -0.0453 2.2264 8.2016 24 6 0.4358 1.5383 7.0808 25 6 0.1436 1.9608 5.7640 26 8 -0.6298 3.0546 5.5604 27 7 0.6172 1.2919 4.7371 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 2.8606 -1.8828 -4.7337 37 1 3.1299 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2492 39 1 0.9937 0.7578 2.3565 40 1 2.3492 -1.1577 6.2227 41 1 2.1737 -0.9103 8.7186 42 1 1.2999 0.3224 10.6339 43 1 -0.1057 2.3110 10.3146 44 1 -0.6653 3.1019 8.0770 45 1 -1.5756 2.8619 5.5009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345912962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -61.309531 kcal Electronic energy + Delta-G solvation = -26981.109924 eV Core-core repulsion = 23155.191050 eV Total energy + Delta-G solvation = -3825.918874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.20636 -40.80095 -38.91693 -38.77385 -37.57011 -35.31203 -34.00061 -33.29982 -32.24047 -30.69263 -29.12077 -27.99924 -27.89443 -25.75482 -25.06070 -24.49704 -23.17441 -22.02326 -20.43452 -19.54615 -19.11348 -18.61980 -18.37569 -17.65467 -17.04525 -16.75119 -16.60952 -16.39309 -16.21194 -15.51057 -15.29516 -15.06229 -14.91941 -14.72533 -14.49274 -14.38155 -14.08780 -13.95812 -13.82114 -13.03727 -12.89287 -12.88233 -12.79821 -12.70879 -12.62281 -12.36555 -12.24775 -12.16885 -11.97048 -11.64821 -11.56952 -11.15785 -11.03147 -10.88353 -10.55725 -10.51867 -10.24734 -10.10873 -9.09696 -8.13900 -6.21390 -0.91340 -0.40491 0.76213 1.29741 1.41807 1.42700 1.54821 2.01277 2.21843 2.40221 2.45427 2.93299 3.20438 3.30322 3.52110 3.65449 3.80267 3.91572 3.99482 4.04693 4.19807 4.24948 4.26151 4.39632 4.61263 4.64794 4.67177 4.68602 4.73837 4.92975 4.93184 5.00748 5.06001 5.09455 5.31989 5.34493 5.37726 5.42942 5.45182 5.47032 5.49479 5.55846 5.77739 5.83264 5.89429 6.28002 6.34460 6.54892 6.72805 6.93186 7.07720 7.45955 8.98807 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.002290 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.221984 B =12221.495207 C =13014.819600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.071 0.929 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.138 3.862 14 N -0.692 5.692 15 C 0.562 3.438 16 O -0.573 6.573 17 C 0.056 3.944 18 C -0.090 4.090 19 C -0.040 4.040 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.103 4.103 23 C -0.089 4.089 24 C -0.118 4.118 25 C 0.356 3.644 26 O -0.475 6.475 27 N -0.510 5.510 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.060 0.940 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.416 0.584 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 9.296 31.843 34.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.089 0.911 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.182 1.182 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.014 3.986 14 N -0.342 5.342 15 C 0.348 3.652 16 O -0.454 6.454 17 C -0.068 4.068 18 C -0.111 4.111 19 C -0.045 4.045 20 C -0.131 4.131 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.121 4.121 25 C 0.160 3.840 26 O -0.285 6.285 27 N -0.232 5.232 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.255 0.745 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -7.933 9.007 30.861 33.113 hybrid contribution -0.274 -0.315 -0.927 1.017 sum -8.207 8.693 29.934 32.233 Atomic orbital electron populations 1.21686 0.93690 1.01050 1.01412 1.20707 0.96681 0.96158 0.92882 1.21691 0.99983 0.94870 1.01363 1.18966 0.94409 0.94278 0.92004 1.21602 1.30347 1.12028 0.91050 0.91050 1.25957 0.95714 0.95914 1.02718 1.70131 1.38773 1.24949 1.24027 0.85468 0.78035 0.78787 0.79177 1.18172 1.21022 1.20958 1.21368 0.98153 0.95609 0.83483 1.45896 1.51953 1.31797 1.04597 1.18245 0.79896 0.83389 0.83631 1.90759 1.40006 1.27516 1.87101 1.20221 0.99652 0.93791 0.93158 1.22304 0.97808 1.00189 0.90825 1.18266 0.96793 0.94596 0.94825 1.21329 1.00521 1.01234 0.90010 1.21514 0.94716 0.94141 1.00342 1.21508 0.96462 0.96105 0.98024 1.21248 0.99090 0.99550 0.90999 1.19255 1.01192 0.96903 0.94760 1.19296 0.92308 0.85790 0.86581 1.84695 1.23765 1.25920 1.94167 1.66715 1.12270 1.06920 1.37308 0.91993 0.92281 0.94079 0.94229 0.92253 0.92126 0.99331 0.99216 0.93161 0.92954 0.92756 0.74490 0.82627 0.82907 0.81922 0.81869 0.82426 0.71205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.05 71.98 0.58 -3.85 16 2 C -0.06 -2.59 0.54 -52.18 -0.03 -2.62 16 3 C -0.12 -4.53 8.05 71.98 0.58 -3.95 16 4 C 0.04 2.15 4.04 29.85 0.12 2.27 16 5 C -0.51 -28.08 7.65 25.60 0.20 -27.88 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.14 5.34 4.56 86.38 0.39 5.74 16 14 N -0.69 -23.29 4.95 -465.89 -2.30 -25.59 16 15 C 0.56 19.43 7.80 86.81 0.68 20.10 16 16 O -0.57 -23.04 16.27 -3.89 -0.06 -23.10 16 17 C 0.06 1.60 6.73 41.44 0.28 1.88 16 18 C -0.09 -2.14 9.41 22.87 0.22 -1.92 16 19 C -0.04 -0.75 5.74 -21.30 -0.12 -0.87 16 20 C -0.11 -1.36 9.81 22.30 0.22 -1.14 16 21 C -0.09 -0.63 9.95 22.06 0.22 -0.41 16 22 C -0.10 -0.68 9.95 22.08 0.22 -0.46 16 23 C -0.09 -0.93 9.58 22.27 0.21 -0.71 16 24 C -0.12 -2.04 5.76 -21.19 -0.12 -2.16 16 25 C 0.36 7.27 7.80 85.52 0.67 7.94 16 26 O -0.47 -7.06 12.83 -88.04 -1.13 -8.19 16 27 N -0.51 -13.39 9.47 -297.68 -2.82 -16.21 16 28 H 0.06 1.88 6.86 -2.38 -0.02 1.86 16 29 H 0.06 2.26 6.62 -2.39 -0.02 2.25 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 2.30 6.62 -2.39 -0.02 2.29 16 33 H 0.06 1.90 6.86 -2.39 -0.02 1.88 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.42 12.75 5.46 -92.71 -0.51 12.25 16 40 H 0.16 3.54 7.59 -2.91 -0.02 3.52 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 43 H 0.16 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.16 0.95 7.65 -2.91 -0.02 0.93 16 45 H 0.43 1.94 9.06 -74.05 -0.67 1.27 16 Total: -1.00 -76.02 372.26 0.62 -75.39 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.14 Total: 16.62 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.77 Total: -7.94 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.84 Total: -99.20 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.19 Total: -31.29 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -76.02 0.62 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345912962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.082 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds