Wall clock time and date at job start Tue Mar 31 2020 15:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21603 * 120.00257 * 359.72088 * 15 14 13 17 17 C 1.47460 * 119.99672 * 179.72396 * 15 14 13 18 18 C 1.36233 * 126.36435 * 179.71155 * 17 15 14 19 19 O 1.34280 * 107.12273 * 179.87565 * 18 17 15 20 20 C 1.34479 * 108.17065 * 0.38878 * 19 18 17 21 21 C 1.47866 * 125.49038 * 179.77452 * 20 19 18 22 22 C 1.39548 * 120.14115 * 179.70339 * 21 20 19 23 23 C 1.37973 * 119.85786 * 179.69764 * 22 21 20 24 24 C 1.38351 * 120.13722 * 0.58045 * 23 22 21 25 25 C 1.38349 * 120.28944 * 359.71368 * 24 23 22 26 26 C 1.37964 * 120.14464 * 359.97438 * 25 24 23 27 27 N 1.30900 * 109.01834 * 359.75711 * 20 19 18 28 28 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 29 29 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 34 34 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 36 36 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 39 39 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 40 40 H 1.07997 * 126.44046 * 359.97438 * 18 17 15 41 41 H 1.07999 * 120.07313 * 359.97333 * 22 21 20 42 42 H 1.07991 * 119.93064 * 180.31656 * 23 22 21 43 43 H 1.07998 * 119.85634 * 179.74168 * 24 23 22 44 44 H 1.07999 * 119.92999 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.07799 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5809 -1.4764 3.7812 17 6 1.3953 0.2111 4.8735 18 6 1.6436 -0.1391 6.1664 19 8 1.0199 0.7589 6.9460 20 6 0.3915 1.6413 6.1491 21 6 -0.4174 2.7900 6.6102 22 6 -1.0174 3.6420 5.6822 23 6 -1.7761 4.7085 6.1189 24 6 -1.9326 4.9410 7.4737 25 6 -1.3354 4.1036 8.3990 26 6 -0.5795 3.0300 7.9754 27 7 0.6116 1.3197 4.8995 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6766 -1.7490 -1.2492 36 1 2.8594 -1.8841 -4.7335 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.9942 0.7584 2.3564 40 1 2.2327 -0.9799 6.5015 41 1 -0.8919 3.4645 4.6243 42 1 -2.2452 5.3656 5.4017 43 1 -2.5241 5.7795 7.8105 44 1 -1.4617 4.2902 9.4552 45 1 -0.1140 2.3768 8.6986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345979911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:20 Heat of formation + Delta-G solvation = -4.645317 kcal Electronic energy + Delta-G solvation = -26651.994826 eV Core-core repulsion = 22828.533097 eV Total energy + Delta-G solvation = -3823.461729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -43.64330 -39.56386 -39.36787 -37.09841 -35.16355 -33.56854 -32.75504 -32.03024 -31.41811 -29.48612 -27.19969 -26.52177 -26.47563 -24.41124 -24.04644 -23.05384 -22.32634 -21.39963 -20.32556 -18.93063 -17.92946 -17.16772 -17.09112 -16.51149 -16.31714 -16.02575 -15.42333 -15.22715 -15.02421 -14.49649 -14.31220 -13.95775 -13.88062 -13.59836 -13.53311 -13.35328 -13.06338 -12.72847 -12.19203 -12.05237 -11.94464 -11.62822 -11.58795 -11.13854 -11.07562 -11.00438 -10.82275 -10.62327 -10.39901 -10.23463 -10.15572 -10.14643 -9.86277 -9.43994 -9.18102 -8.90581 -8.82757 -8.62092 -8.35066 -5.98910 -3.99891 0.23715 0.92539 1.10733 2.02301 2.18269 3.16883 3.27214 3.31129 3.39201 3.41833 3.43069 3.57320 4.39202 4.46174 4.48061 4.57052 4.64210 4.74469 4.93331 5.02584 5.14216 5.34545 5.36763 5.41199 5.49847 5.55906 5.63458 5.68380 5.78532 5.94872 5.98026 6.03627 6.21250 6.24822 6.28151 6.41566 6.41703 6.54458 6.66307 6.75965 7.08150 7.09656 7.12443 7.17198 7.65213 7.72736 7.77533 7.99988 8.29542 8.42417 9.05019 9.63162 11.12603 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002379 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.940180 B =11765.122172 C =13257.679168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.700 5.700 15 C 0.593 3.407 16 O -0.541 6.541 17 C -0.060 4.060 18 C 0.013 3.987 19 O -0.192 6.192 20 C 0.235 3.765 21 C -0.019 4.019 22 C -0.068 4.068 23 C -0.120 4.120 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.089 4.089 27 N -0.445 5.445 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.234 0.766 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 11.368 25.993 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.186 4.186 4 C -0.002 4.002 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.004 3.996 14 N -0.350 5.350 15 C 0.377 3.623 16 O -0.419 6.419 17 C -0.181 4.181 18 C -0.061 4.061 19 O -0.077 6.077 20 C 0.030 3.970 21 C -0.020 4.020 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.109 4.109 27 N -0.175 5.175 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.244 0.756 40 H 0.250 0.750 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.622 10.858 25.380 28.638 hybrid contribution -0.166 0.246 -0.425 0.519 sum -7.788 11.104 24.955 28.402 Atomic orbital electron populations 1.21770 0.95196 1.01183 1.00392 1.20909 0.95573 0.95904 0.94850 1.21773 1.00515 0.95870 1.00394 1.19101 0.96379 0.95242 0.89452 1.21220 1.31048 1.12006 0.90471 0.92177 1.25019 0.95354 0.95107 0.99106 1.69973 1.37089 1.23041 1.23311 0.86589 0.78589 0.79682 0.83437 1.19792 1.21156 1.21151 1.21741 0.99108 0.96138 0.82653 1.46042 1.51925 1.31854 1.05181 1.16749 0.80276 0.83273 0.81951 1.90823 1.38677 1.25899 1.86505 1.21960 1.03944 0.96859 0.95364 1.25390 0.97576 0.94291 0.88860 1.84415 1.51358 1.32856 1.39116 1.23759 0.97134 0.92964 0.83173 1.17285 0.99056 0.91818 0.93889 1.21266 0.94425 0.92864 1.00207 1.21171 0.98920 0.97637 0.96104 1.21405 0.98281 0.98962 0.93256 1.21084 0.97851 0.94947 1.00166 1.21245 0.97884 0.97723 0.94000 1.70969 1.14658 1.12462 1.19440 0.95100 0.91357 0.93362 0.93362 0.91359 0.95096 0.96289 0.96283 0.93115 0.91450 0.91445 0.75560 0.74951 0.84114 0.84872 0.85405 0.85181 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.28 16 14 N -0.70 -11.25 4.96 -61.37 -0.30 -11.56 16 15 C 0.59 9.66 7.82 -12.50 -0.10 9.56 16 16 O -0.54 -10.13 16.89 5.27 0.09 -10.04 16 17 C -0.06 -0.82 6.99 -83.08 -0.58 -1.40 16 18 C 0.01 0.14 11.94 30.01 0.36 0.49 16 19 O -0.19 -2.04 10.45 5.29 0.06 -1.99 16 20 C 0.24 2.70 7.88 -14.01 -0.11 2.59 16 21 C -0.02 -0.18 5.87 -104.98 -0.62 -0.80 16 22 C -0.07 -0.59 9.68 -39.19 -0.38 -0.97 16 23 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 24 C -0.10 -0.56 10.04 -39.50 -0.40 -0.96 16 25 C -0.12 -0.71 10.03 -39.64 -0.40 -1.11 16 26 C -0.09 -0.66 9.71 -39.19 -0.38 -1.04 16 27 N -0.45 -5.89 10.65 -8.26 -0.09 -5.98 16 28 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 29 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 33 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.41 6.11 5.89 -40.82 -0.24 5.86 16 40 H 0.23 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.14 1.24 7.82 -52.49 -0.41 0.83 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 44 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.13 0.80 7.89 -52.49 -0.41 0.39 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -32.10 379.05 -7.92 -40.02 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.13 Total: 3.04 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.98 Total: -9.72 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.34 Total: -43.30 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.14 Total: -12.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.10 -7.92 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345979911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.376 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds