Wall clock time and date at job start Tue Mar 31 2020 15:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21603 * 120.00257 * 359.72088 * 15 14 13 17 17 C 1.47460 * 119.99672 * 179.72396 * 15 14 13 18 18 C 1.36233 * 126.36435 * 179.71155 * 17 15 14 19 19 O 1.34280 * 107.12273 * 179.87565 * 18 17 15 20 20 C 1.34479 * 108.17065 * 0.38878 * 19 18 17 21 21 C 1.47866 * 125.49038 * 179.77452 * 20 19 18 22 22 C 1.39548 * 120.14115 * 179.70339 * 21 20 19 23 23 C 1.37973 * 119.85786 * 179.69764 * 22 21 20 24 24 C 1.38351 * 120.13722 * 0.58045 * 23 22 21 25 25 C 1.38349 * 120.28944 * 359.71368 * 24 23 22 26 26 C 1.37964 * 120.14464 * 359.97438 * 25 24 23 27 27 N 1.30900 * 109.01834 * 359.75711 * 20 19 18 28 28 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 29 29 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 33 33 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 34 34 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 36 36 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 39 39 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 40 40 H 1.07997 * 126.44046 * 359.97438 * 18 17 15 41 41 H 1.07999 * 120.07313 * 359.97333 * 22 21 20 42 42 H 1.07991 * 119.93064 * 180.31656 * 23 22 21 43 43 H 1.07998 * 119.85634 * 179.74168 * 24 23 22 44 44 H 1.07999 * 119.92999 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.07799 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5809 -1.4764 3.7812 17 6 1.3953 0.2111 4.8735 18 6 1.6436 -0.1391 6.1664 19 8 1.0199 0.7589 6.9460 20 6 0.3915 1.6413 6.1491 21 6 -0.4174 2.7900 6.6102 22 6 -1.0174 3.6420 5.6822 23 6 -1.7761 4.7085 6.1189 24 6 -1.9326 4.9410 7.4737 25 6 -1.3354 4.1036 8.3990 26 6 -0.5795 3.0300 7.9754 27 7 0.6116 1.3197 4.8995 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6766 -1.7490 -1.2492 36 1 2.8594 -1.8841 -4.7335 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.9942 0.7584 2.3564 40 1 2.2327 -0.9799 6.5015 41 1 -0.8919 3.4645 4.6243 42 1 -2.2452 5.3656 5.4017 43 1 -2.5241 5.7795 7.8105 44 1 -1.4617 4.2902 9.4552 45 1 -0.1140 2.3768 8.6986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345979911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:18 Heat of formation + Delta-G solvation = -25.317735 kcal Electronic energy + Delta-G solvation = -26652.891250 eV Core-core repulsion = 22828.533097 eV Total energy + Delta-G solvation = -3824.358152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.53014 -40.85960 -39.94460 -38.68967 -36.10908 -35.24624 -33.93572 -33.38660 -31.91611 -30.30254 -29.14627 -27.99974 -27.96639 -25.63807 -24.93619 -24.30389 -23.28358 -22.17731 -21.48878 -20.16768 -19.21275 -18.37117 -18.03882 -17.98342 -17.33637 -16.97925 -16.51557 -16.41367 -16.36380 -15.88728 -15.30669 -15.16370 -14.80120 -14.69858 -14.58476 -14.36336 -14.31230 -13.95918 -13.90489 -13.83759 -12.91288 -12.71041 -12.66397 -12.53974 -12.41158 -12.36536 -12.25176 -12.14426 -11.97348 -11.90754 -11.57088 -11.52288 -10.99010 -10.90193 -10.86024 -10.51740 -10.17900 -9.93646 -9.39056 -8.13794 -6.21229 -0.43104 0.17757 0.43402 1.19804 1.36166 1.41861 1.42955 1.54764 1.98639 2.14329 2.44673 2.65087 2.85410 3.20698 3.58768 3.65229 3.92907 4.00066 4.03516 4.04663 4.19416 4.20081 4.35208 4.44989 4.48610 4.61604 4.65962 4.68370 4.68525 4.78459 4.92843 4.94675 5.05155 5.09460 5.10284 5.30183 5.38950 5.42580 5.47513 5.48665 5.49617 5.55325 5.55831 5.77916 5.89588 5.95378 6.18762 6.31253 6.50117 6.93430 7.01368 7.46216 8.98859 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.002379 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.940180 B =11765.122172 C =13257.679168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.071 0.929 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.139 3.861 14 N -0.694 5.694 15 C 0.596 3.404 16 O -0.571 6.571 17 C -0.093 4.093 18 C 0.037 3.963 19 O -0.186 6.186 20 C 0.240 3.760 21 C -0.047 4.047 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.094 4.094 25 C -0.121 4.121 26 C -0.092 4.092 27 N -0.467 5.467 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.061 0.939 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 13.960 28.201 32.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.089 0.911 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.182 1.182 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.015 3.985 14 N -0.345 5.345 15 C 0.382 3.618 16 O -0.451 6.451 17 C -0.213 4.213 18 C -0.037 4.037 19 O -0.071 6.071 20 C 0.034 3.966 21 C -0.048 4.048 22 C -0.103 4.103 23 C -0.143 4.143 24 C -0.112 4.112 25 C -0.139 4.139 26 C -0.112 4.112 27 N -0.197 5.197 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.279 0.721 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.471 13.481 27.595 32.139 hybrid contribution 0.366 -0.508 -0.970 1.154 sum -9.105 12.973 26.626 30.986 Atomic orbital electron populations 1.21691 0.93778 1.01041 1.01387 1.20711 0.96592 0.96239 0.92894 1.21693 1.00038 0.94784 1.01388 1.18966 0.94454 0.94271 0.91983 1.21601 1.30348 1.12006 0.91052 0.91055 1.25942 0.95709 0.95905 1.02690 1.70121 1.38818 1.24902 1.24030 0.85487 0.78042 0.78805 0.79246 1.18152 1.21028 1.21014 1.21379 0.98272 0.95595 0.83226 1.45852 1.52082 1.31918 1.04619 1.17016 0.79473 0.82827 0.82465 1.90800 1.40054 1.27281 1.87009 1.21639 1.06287 0.98192 0.95168 1.25918 0.95902 0.93988 0.87917 1.84455 1.51181 1.32698 1.38786 1.24227 0.96498 0.93085 0.82791 1.17473 1.00325 0.91935 0.95080 1.21325 0.95391 0.93810 0.99746 1.21440 0.98408 0.97143 0.97274 1.21809 0.97446 0.99290 0.92691 1.21457 0.96726 0.93999 1.01734 1.21451 0.98047 0.98443 0.93223 1.70905 1.15504 1.12724 1.20560 0.92038 0.92297 0.94129 0.94134 0.92298 0.92035 0.99242 0.99235 0.93166 0.92686 0.92674 0.74734 0.72087 0.85209 0.83100 0.82537 0.82434 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.05 71.98 0.58 -3.78 16 2 C -0.06 -2.52 0.54 -52.18 -0.03 -2.55 16 3 C -0.12 -4.36 8.05 71.98 0.58 -3.79 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -27.71 7.65 25.60 0.20 -27.52 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 9 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.14 5.19 4.56 86.38 0.39 5.59 16 14 N -0.69 -22.28 4.96 -466.32 -2.31 -24.59 16 15 C 0.60 19.44 7.82 86.67 0.68 20.12 16 16 O -0.57 -21.67 16.89 -4.04 -0.07 -21.74 16 17 C -0.09 -2.50 6.99 40.50 0.28 -2.21 16 18 C 0.04 0.75 11.94 67.35 0.80 1.56 16 19 O -0.19 -3.68 10.45 -3.98 -0.04 -3.72 16 20 C 0.24 5.30 7.88 87.38 0.69 5.99 16 21 C -0.05 -0.83 5.87 -20.10 -0.12 -0.95 16 22 C -0.08 -1.35 9.68 22.52 0.22 -1.13 16 23 C -0.12 -1.36 10.03 22.23 0.22 -1.14 16 24 C -0.09 -0.73 10.04 22.32 0.22 -0.51 16 25 C -0.12 -1.01 10.03 22.23 0.22 -0.79 16 26 C -0.09 -1.17 9.71 22.52 0.22 -0.95 16 27 N -0.47 -12.13 10.65 -294.25 -3.13 -15.26 16 28 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 29 H 0.06 2.22 6.62 -2.38 -0.02 2.20 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 2.22 6.62 -2.38 -0.02 2.20 16 33 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.05 2.18 8.14 -2.38 -0.02 2.17 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.41 12.05 5.89 -92.71 -0.55 11.51 16 40 H 0.26 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.13 2.29 7.82 -2.91 -0.02 2.26 16 42 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.16 0.32 8.06 -2.91 -0.02 0.29 16 44 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 45 H 0.14 1.41 7.89 -2.91 -0.02 1.39 16 Total: -1.00 -71.48 379.05 2.97 -68.51 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.47 Total: 17.41 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.75 Total: -9.68 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -5.16 Total: -96.78 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.11 Total: -25.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.48 2.97 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345979911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.190 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds