Wall clock time and date at job start Tue Mar 31 2020 15:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47455 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47057 * 120.00377 * 9 7 5 12 12 H 1.48508 * 109.46895 * 239.99925 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21494 * 119.99763 * 359.72900 * 15 14 13 17 17 C 1.48343 * 119.99875 * 179.72911 * 15 14 13 18 18 C 1.41924 * 126.83889 * 179.71588 * 17 15 14 19 19 C 1.36711 * 103.81118 * 179.85641 * 18 17 15 20 20 C 1.47855 * 126.81592 * 180.12818 * 19 18 17 21 21 C 1.39562 * 120.14331 * 0.02562 * 20 19 18 22 22 C 1.37967 * 119.85144 * 179.77061 * 21 20 19 23 23 C 1.38349 * 120.14543 * 0.50562 * 22 21 20 24 24 C 1.38364 * 120.29094 * 359.74841 * 23 22 21 25 25 C 1.37966 * 120.14014 * 359.97438 * 24 23 22 26 26 O 1.34461 * 106.36838 * 0.39383 * 19 18 17 27 27 N 1.20882 * 111.73741 * 359.72985 * 26 19 18 28 28 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 29 29 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 30 30 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 33 33 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 34 34 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 36 36 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 38 38 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 39 39 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 40 40 H 1.07994 * 128.09334 * 359.97438 * 18 17 15 41 41 H 1.08002 * 120.07397 * 0.02562 * 21 20 19 42 42 H 1.08001 * 119.92133 * 180.25637 * 22 21 20 43 43 H 1.07996 * 119.85600 * 179.72438 * 23 22 21 44 44 H 1.07998 * 119.92901 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.06566 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 0.4244 1.5664 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4242 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5724 -1.4813 3.7810 17 6 1.3882 0.2120 4.8807 18 6 1.6364 -0.1466 6.2313 19 6 0.9749 0.8101 6.9498 20 6 0.9024 0.9200 8.4225 21 6 1.5535 -0.0154 9.2280 22 6 1.4858 0.0957 10.6015 23 6 0.7657 1.1253 11.1807 24 6 0.1135 2.0529 10.3878 25 6 0.1780 1.9565 9.0130 26 8 0.3985 1.6277 6.0514 27 7 0.6358 1.2847 4.9169 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 2.8615 -1.8822 -4.7336 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 0.9973 0.7603 2.3565 40 1 2.2144 -0.9792 6.6042 41 1 2.1126 -0.8220 8.7772 42 1 1.9927 -0.6251 11.2260 43 1 0.7121 1.2052 12.2563 44 1 -0.4466 2.8545 10.8460 45 1 -0.3312 2.6814 8.3953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345995243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:48 Heat of formation + Delta-G solvation = 33.943616 kcal Electronic energy + Delta-G solvation = -26361.076990 eV Core-core repulsion = 22539.288603 eV Total energy + Delta-G solvation = -3821.788387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -45.28917 -39.65186 -39.55349 -37.18022 -34.36944 -33.92877 -33.33701 -32.06862 -31.47333 -29.94347 -27.30651 -26.70321 -26.52446 -24.65503 -24.16265 -23.19920 -22.40938 -22.15839 -20.12991 -18.95442 -18.05270 -18.03775 -16.92065 -16.78829 -16.35745 -15.69611 -15.54944 -15.29912 -15.14807 -14.51060 -14.33838 -14.00333 -13.76798 -13.66405 -13.59163 -13.44943 -13.13590 -12.78661 -12.22970 -12.11224 -12.06965 -11.75679 -11.55203 -11.20095 -11.03625 -10.84782 -10.74662 -10.68070 -10.64387 -10.44722 -10.30052 -10.24215 -9.90789 -9.49445 -9.22513 -8.93887 -8.88886 -8.81640 -8.37151 -6.01077 -4.02266 0.15212 0.87123 1.09033 1.73646 2.48801 3.01132 3.14517 3.29886 3.32221 3.38042 3.40777 3.77178 4.10798 4.38821 4.44568 4.45169 4.57958 4.68836 4.80799 4.89069 5.01441 5.12872 5.33614 5.34529 5.44973 5.48945 5.56538 5.57729 5.72823 5.90308 5.90802 5.97360 6.15258 6.18172 6.21826 6.35689 6.37534 6.43903 6.62009 6.69311 7.03531 7.05430 7.09267 7.46954 7.62403 7.74006 7.76865 7.97526 8.14986 8.39507 9.02561 9.60970 11.10403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.039368 B = 0.001895 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.062050 B =14769.422389 C =15284.106743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.702 5.702 15 C 0.590 3.410 16 O -0.526 6.526 17 C -0.016 4.016 18 C -0.165 4.165 19 C 0.005 3.995 20 C -0.021 4.021 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.093 4.093 26 O 0.129 5.871 27 N -0.327 5.327 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.406 0.594 40 H 0.184 0.816 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 6.422 30.473 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.353 5.353 15 C 0.373 3.627 16 O -0.401 6.401 17 C -0.175 4.175 18 C -0.187 4.187 19 C -0.058 4.058 20 C -0.023 4.023 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.112 4.112 26 O 0.051 5.949 27 N -0.027 5.027 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.242 0.758 40 H 0.201 0.799 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.419 6.315 29.338 30.333 hybrid contribution -0.133 0.195 -0.608 0.652 sum -4.552 6.509 28.730 29.807 Atomic orbital electron populations 1.21779 0.95155 1.01253 1.00412 1.20931 0.95615 0.95940 0.94847 1.21778 1.00587 0.95828 1.00414 1.19098 0.96406 0.95245 0.89368 1.21219 1.31150 1.12082 0.90474 0.92159 1.25020 0.95312 0.95099 0.99121 1.69974 1.36979 1.23050 1.23353 0.86578 0.78599 0.79678 0.83383 1.19792 1.21132 1.21125 1.21786 0.99232 0.96202 0.82394 1.46119 1.52242 1.31665 1.05290 1.16884 0.80644 0.83612 0.81588 1.90803 1.37930 1.25246 1.86117 1.23539 1.01513 0.95803 0.96622 1.22604 1.03867 1.01979 0.90240 1.22451 0.98932 0.92621 0.91754 1.17588 1.01204 0.97860 0.85617 1.21174 0.98152 0.97860 0.93583 1.21106 0.99446 0.98701 0.94266 1.21372 0.96357 0.94436 1.00328 1.21140 0.99780 0.99469 0.93237 1.21334 0.97448 0.96984 0.95421 1.84859 1.55388 1.44381 1.10223 1.74162 1.15007 1.14055 0.99468 0.95219 0.91245 0.93263 0.93263 0.91237 0.95223 0.96241 0.96237 0.93086 0.91247 0.91221 0.75811 0.79919 0.85024 0.85113 0.85523 0.85237 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 2 C -0.07 -1.41 0.54 -154.51 -0.08 -1.50 16 3 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 14 N -0.70 -11.18 4.96 -61.09 -0.30 -11.48 16 15 C 0.59 9.62 7.85 -12.10 -0.09 9.52 16 16 O -0.53 -9.94 16.95 5.37 0.09 -9.85 16 17 C -0.02 -0.22 7.18 -82.62 -0.59 -0.82 16 18 C -0.16 -1.84 10.34 -38.72 -0.40 -2.24 16 19 C 0.01 0.05 7.15 -36.20 -0.26 -0.21 16 20 C -0.02 -0.17 5.87 -104.97 -0.62 -0.79 16 21 C -0.09 -0.59 9.58 -39.19 -0.38 -0.96 16 22 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 23 C -0.11 -0.52 10.04 -39.49 -0.40 -0.91 16 24 C -0.12 -0.62 10.03 -39.63 -0.40 -1.02 16 25 C -0.09 -0.63 9.73 -39.19 -0.38 -1.01 16 26 O 0.13 1.45 11.01 16.05 0.18 1.63 16 27 N -0.33 -4.32 11.81 33.35 0.39 -3.93 16 28 H 0.03 0.46 6.87 -51.93 -0.36 0.10 16 29 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 33 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.41 5.97 5.92 -40.82 -0.24 5.73 16 40 H 0.18 1.68 7.46 -52.49 -0.39 1.29 16 41 H 0.13 0.70 7.15 -52.49 -0.38 0.32 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 45 H 0.13 0.75 7.96 -52.49 -0.42 0.34 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -31.52 377.49 -8.19 -39.71 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.06 Total: 2.04 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.89 Total: -14.41 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.83 Total: -41.08 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.27 Total: -8.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.52 -8.19 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345995243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.655 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds