Wall clock time and date at job start Tue Mar 31 2020 15:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47455 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47057 * 120.00377 * 9 7 5 12 12 H 1.48508 * 109.46895 * 239.99925 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21494 * 119.99763 * 359.72900 * 15 14 13 17 17 C 1.48343 * 119.99875 * 179.72911 * 15 14 13 18 18 C 1.41924 * 126.83889 * 179.71588 * 17 15 14 19 19 C 1.36711 * 103.81118 * 179.85641 * 18 17 15 20 20 C 1.47855 * 126.81592 * 180.12818 * 19 18 17 21 21 C 1.39562 * 120.14331 * 0.02562 * 20 19 18 22 22 C 1.37967 * 119.85144 * 179.77061 * 21 20 19 23 23 C 1.38349 * 120.14543 * 0.50562 * 22 21 20 24 24 C 1.38364 * 120.29094 * 359.74841 * 23 22 21 25 25 C 1.37966 * 120.14014 * 359.97438 * 24 23 22 26 26 O 1.34461 * 106.36838 * 0.39383 * 19 18 17 27 27 N 1.20882 * 111.73741 * 359.72985 * 26 19 18 28 28 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 29 29 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 30 30 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 33 33 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 34 34 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 36 36 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 38 38 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 39 39 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 40 40 H 1.07994 * 128.09334 * 359.97438 * 18 17 15 41 41 H 1.08002 * 120.07397 * 0.02562 * 21 20 19 42 42 H 1.08001 * 119.92133 * 180.25637 * 22 21 20 43 43 H 1.07996 * 119.85600 * 179.72438 * 23 22 21 44 44 H 1.07998 * 119.92901 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.06566 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 0.4244 1.5664 -4.8530 11 1 2.4043 0.8662 -6.0650 12 1 0.4242 -0.5338 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5724 -1.4813 3.7810 17 6 1.3882 0.2120 4.8807 18 6 1.6364 -0.1466 6.2313 19 6 0.9749 0.8101 6.9498 20 6 0.9024 0.9200 8.4225 21 6 1.5535 -0.0154 9.2280 22 6 1.4858 0.0957 10.6015 23 6 0.7657 1.1253 11.1807 24 6 0.1135 2.0529 10.3878 25 6 0.1780 1.9565 9.0130 26 8 0.3985 1.6277 6.0514 27 7 0.6358 1.2847 4.9169 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 2.8615 -1.8822 -4.7336 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 0.9973 0.7603 2.3565 40 1 2.2144 -0.9792 6.6042 41 1 2.1126 -0.8220 8.7772 42 1 1.9927 -0.6251 11.2260 43 1 0.7121 1.2052 12.2563 44 1 -0.4466 2.8545 10.8460 45 1 -0.3312 2.6814 8.3953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345995243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:47 Heat of formation + Delta-G solvation = 16.540035 kcal Electronic energy + Delta-G solvation = -26361.831666 eV Core-core repulsion = 22539.288603 eV Total energy + Delta-G solvation = -3822.543063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -46.22382 -41.01514 -39.99830 -38.76614 -35.48552 -35.23091 -34.38839 -33.81283 -31.89215 -30.59362 -29.21988 -28.16913 -28.03432 -25.95882 -24.84506 -24.61535 -23.37197 -22.89221 -21.31122 -20.06124 -19.25549 -18.99488 -18.39416 -18.05839 -17.33388 -16.94233 -16.54576 -16.46670 -16.33789 -15.83376 -15.31249 -15.22784 -14.89838 -14.77823 -14.45114 -14.28537 -14.24832 -13.98134 -13.93599 -13.87062 -12.92903 -12.92506 -12.72880 -12.67281 -12.39216 -12.28487 -12.26239 -11.99804 -11.95796 -11.70334 -11.67165 -11.60316 -11.39809 -11.03210 -10.89074 -10.53080 -10.29466 -9.90533 -9.41110 -8.15355 -6.22868 -0.49276 0.07749 0.46432 1.06612 1.40831 1.42086 1.53722 1.64465 1.82472 1.93065 2.43356 2.73885 2.87851 3.19208 3.28529 3.71727 3.84776 3.96101 4.00651 4.02356 4.07776 4.12362 4.15362 4.33037 4.52365 4.61604 4.64058 4.64209 4.67814 4.71761 4.88550 4.95614 4.98551 5.06482 5.12258 5.21268 5.38250 5.44507 5.45362 5.46948 5.50391 5.53421 5.58515 5.75233 5.87861 5.99020 6.19376 6.30349 6.78342 6.89930 6.91845 7.44689 8.97214 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.039368 B = 0.001895 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.062050 B =14769.422389 C =15284.106743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.071 0.929 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.138 3.862 14 N -0.694 5.694 15 C 0.593 3.407 16 O -0.557 6.557 17 C -0.036 4.036 18 C -0.175 4.175 19 C 0.026 3.974 20 C -0.048 4.048 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.123 4.123 25 C -0.101 4.101 26 O 0.136 5.864 27 N -0.339 5.339 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.060 0.940 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.198 0.802 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 8.304 33.054 34.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.066 4.066 3 C -0.180 4.180 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.089 0.911 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.182 1.182 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.015 3.985 14 N -0.346 5.346 15 C 0.377 3.623 16 O -0.434 6.434 17 C -0.193 4.193 18 C -0.198 4.198 19 C -0.037 4.037 20 C -0.049 4.049 21 C -0.114 4.114 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.119 4.119 26 O 0.057 5.943 27 N -0.037 5.037 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.252 0.748 40 H 0.215 0.785 41 H 0.157 0.843 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.761 8.226 31.921 33.463 hybrid contribution 0.269 -0.378 -1.194 1.281 sum -5.491 7.848 30.727 32.185 Atomic orbital electron populations 1.21707 0.93755 1.01164 1.01415 1.20736 0.96634 0.96289 0.92932 1.21707 1.00177 0.94746 1.01419 1.18958 0.94522 0.94292 0.91848 1.21611 1.30451 1.12086 0.91102 0.91069 1.25934 0.95670 0.95893 1.02661 1.70119 1.38699 1.24889 1.24055 0.85484 0.78042 0.78782 0.79254 1.18238 1.21009 1.20997 1.21437 0.98501 0.95706 0.82864 1.45921 1.52292 1.31718 1.04669 1.17136 0.79866 0.83171 0.82119 1.90780 1.39315 1.26678 1.86656 1.23245 1.02956 0.96653 0.96402 1.22774 1.04796 1.03021 0.89192 1.22780 0.97176 0.91276 0.92480 1.17702 1.03336 0.99514 0.84336 1.21391 0.97952 0.97764 0.94302 1.21428 0.99413 0.99302 0.93887 1.21771 0.94950 0.93547 1.01739 1.21452 0.99781 1.00169 0.92672 1.21522 0.97262 0.96750 0.96395 1.84825 1.55083 1.44347 1.10006 1.74139 1.15225 1.13956 1.00406 0.92074 0.92262 0.93962 0.93957 0.92256 0.92073 0.99128 0.99125 0.93141 0.92336 0.92320 0.74849 0.78540 0.84316 0.82993 0.82993 0.83070 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 2 C -0.07 -2.55 0.54 -52.18 -0.03 -2.58 16 3 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.51 -27.77 7.65 25.60 0.20 -27.57 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 9 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.14 5.08 4.56 86.38 0.39 5.47 16 14 N -0.69 -21.84 4.96 -465.48 -2.31 -24.14 16 15 C 0.59 19.35 7.85 86.93 0.68 20.03 16 16 O -0.56 -21.45 16.95 -3.70 -0.06 -21.51 16 17 C -0.04 -0.97 7.18 42.86 0.31 -0.66 16 18 C -0.18 -3.80 10.34 22.83 0.24 -3.57 16 19 C 0.03 0.48 7.15 24.46 0.17 0.66 16 20 C -0.05 -0.68 5.87 -20.09 -0.12 -0.80 16 21 C -0.10 -1.08 9.58 22.53 0.22 -0.87 16 22 C -0.12 -0.95 10.03 22.23 0.22 -0.73 16 23 C -0.10 -0.66 10.04 22.33 0.22 -0.43 16 24 C -0.12 -0.95 10.03 22.24 0.22 -0.72 16 25 C -0.10 -1.16 9.73 22.52 0.22 -0.94 16 26 O 0.14 2.92 11.01 67.63 0.74 3.66 16 27 N -0.34 -8.61 11.81 -49.00 -0.58 -9.19 16 28 H 0.06 1.77 6.87 -2.39 -0.02 1.76 16 29 H 0.06 2.22 6.62 -2.39 -0.02 2.21 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.22 6.62 -2.39 -0.02 2.21 16 33 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 38 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.41 11.58 5.92 -92.71 -0.55 11.03 16 40 H 0.20 3.50 7.46 -2.91 -0.02 3.48 16 41 H 0.14 1.27 7.15 -2.91 -0.02 1.25 16 42 H 0.15 0.48 8.06 -2.91 -0.02 0.45 16 43 H 0.15 0.19 8.06 -2.91 -0.02 0.16 16 44 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 45 H 0.14 1.34 7.96 -2.91 -0.02 1.31 16 Total: -1.00 -69.49 377.49 5.27 -64.22 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.47 Total: 15.48 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.69 Total: -17.85 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -2.60 Total: -89.97 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.68 Total: -17.85 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.49 5.27 -64.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345995243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.761 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds