Wall clock time and date at job start Tue Mar 31 2020 15:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47416 * 239.99442 * 2 1 3 5 5 C 1.53004 * 109.47046 * 119.99430 * 2 1 3 6 6 N 1.46503 * 109.46933 * 62.31772 * 5 2 1 7 7 C 1.46501 * 119.99853 * 278.22433 * 6 5 2 8 8 C 1.53008 * 109.47056 * 274.36119 * 7 6 5 9 9 C 1.47193 * 109.46951 * 180.02562 * 8 7 6 10 10 N 6.33944 * 54.27410 * 129.62519 * 2 1 3 11 11 S 1.65601 * 119.99896 * 98.22387 * 6 5 2 12 12 O 1.42100 * 104.27622 * 333.92914 * 11 6 5 13 13 O 1.42099 * 104.27747 * 206.07071 * 11 6 5 14 14 C 1.81393 * 104.44926 * 90.00008 * 11 6 5 15 15 C 1.53007 * 109.47135 * 186.17253 * 14 11 6 16 16 C 1.50704 * 115.54592 * 301.74165 * 15 14 11 17 17 H 1.08000 * 119.99956 * 92.08638 * 16 15 14 18 18 C 1.37877 * 120.00033 * 272.08369 * 16 15 14 19 19 N 1.31512 * 119.99677 * 183.15700 * 18 16 15 20 20 Si 1.86803 * 120.00070 * 3.15414 * 18 16 15 21 21 H 1.48496 * 109.47213 * 265.19844 * 20 18 16 22 22 H 1.48506 * 109.47035 * 25.19293 * 20 18 16 23 23 H 1.48497 * 109.46981 * 145.19402 * 20 18 16 24 24 C 1.52993 * 117.49936 * 87.41349 * 15 14 11 25 25 C 1.52998 * 117.49734 * 156.07421 * 15 14 11 26 26 H 1.09008 * 109.47492 * 292.27277 * 1 2 3 27 27 H 1.09005 * 109.47251 * 52.27587 * 1 2 3 28 28 H 1.09004 * 109.47013 * 172.27427 * 1 2 3 29 29 H 1.09004 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47002 * 299.99490 * 3 2 1 31 31 H 1.08998 * 109.47513 * 59.99504 * 3 2 1 32 32 H 1.08996 * 109.47302 * 300.00540 * 4 2 1 33 33 H 1.09007 * 109.46312 * 60.00018 * 4 2 1 34 34 H 1.08994 * 109.46763 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47142 * 302.32318 * 5 2 1 36 36 H 1.08996 * 109.47452 * 182.31934 * 5 2 1 37 37 H 1.08991 * 109.47445 * 34.36273 * 7 6 5 38 38 H 1.09005 * 109.46828 * 154.36842 * 7 6 5 39 39 H 1.09007 * 109.46820 * 300.00546 * 8 7 6 40 40 H 1.09000 * 109.46807 * 59.99736 * 8 7 6 41 41 H 1.08995 * 109.47430 * 66.16975 * 14 11 6 42 42 H 1.09005 * 109.47387 * 306.16788 * 14 11 6 43 43 H 0.97007 * 119.99590 * 180.02562 * 19 18 16 44 44 H 1.09007 * 117.49830 * 215.00433 * 24 15 14 45 45 H 1.09005 * 117.50181 * 0.02562 * 24 15 14 46 46 H 1.08993 * 117.50345 * 359.97399 * 25 15 14 47 47 H 1.09004 * 117.50061 * 144.97609 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7211 1.2493 6 7 1.5977 -2.1176 1.2218 7 6 0.2447 -2.4662 1.6623 8 6 0.2369 -2.6615 3.1799 9 6 -1.1224 -3.0124 3.6223 10 7 -2.1717 -3.2822 3.9640 11 16 2.6273 -3.3018 0.6928 12 8 3.5169 -2.6262 -0.1854 13 8 1.7666 -4.3276 0.2172 14 6 3.4990 -3.8448 2.1880 15 6 4.5970 -4.8393 1.8054 16 6 4.1314 -6.0719 1.0739 17 1 4.1116 -6.0839 -0.0058 18 6 3.7306 -7.1843 1.7832 19 7 3.3834 -8.2808 1.1454 20 14 3.6809 -7.1339 3.6499 21 1 4.9514 -7.6775 4.1937 22 1 3.5092 -5.7301 4.1028 23 1 2.5429 -7.9541 4.1370 24 6 5.9663 -4.2698 1.4295 25 6 5.7780 -4.9918 2.7661 26 1 -0.3634 0.3895 0.9510 27 1 -0.3634 0.6288 -0.8129 28 1 -0.3633 -1.0184 -0.1382 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6766 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2493 35 1 1.6430 -0.2318 2.1388 36 1 3.1291 -0.6853 1.2704 37 1 -0.4424 -1.6633 1.3958 38 1 -0.0692 -3.3897 1.1756 39 1 0.9241 -3.4645 3.4464 40 1 0.5509 -1.7381 3.6666 41 1 2.7935 -4.3254 2.8656 42 1 3.9464 -2.9819 2.6814 43 1 3.1011 -9.0633 1.6444 44 1 6.5305 -4.7866 0.6531 45 1 6.0852 -3.1865 1.4551 46 1 5.7731 -4.3833 3.6703 47 1 6.2181 -5.9837 2.8693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346457178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:56 Heat of formation + Delta-G solvation = -21.875810 kcal Electronic energy + Delta-G solvation = -28244.797723 eV Core-core repulsion = 24556.032775 eV Total energy + Delta-G solvation = -3688.764948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.80657 -37.17823 -37.01443 -36.34366 -35.17876 -34.76357 -32.20600 -31.03285 -28.62239 -27.55506 -27.12323 -26.22898 -25.59281 -23.22535 -21.76629 -19.55663 -19.18853 -18.32578 -17.80847 -17.26807 -16.69064 -16.04006 -15.67986 -15.11610 -15.05019 -14.66942 -14.40400 -14.28841 -13.96663 -13.79789 -13.38197 -13.08476 -12.96532 -12.80044 -12.63156 -12.52731 -12.37001 -12.20262 -12.15507 -11.88102 -11.65301 -11.47960 -11.31778 -11.25933 -11.12661 -11.06585 -10.98211 -10.89309 -10.69691 -10.51474 -10.45217 -10.40549 -10.09990 -9.75712 -9.21487 -9.02598 -8.70715 -8.48865 -6.20759 -4.29894 0.82806 2.61253 2.70149 3.13381 3.17885 3.27473 3.30101 3.92152 4.30295 4.41911 4.62156 4.64573 4.69222 4.75615 4.84508 4.86457 4.93204 5.02993 5.09231 5.23248 5.34566 5.42279 5.44405 5.53259 5.59739 5.67267 5.71983 5.74077 5.81743 5.88765 5.94015 5.97675 6.01144 6.05103 6.11035 6.14088 6.23134 6.36096 6.37381 6.57457 6.62343 6.71950 6.81875 7.01400 7.46160 7.54732 8.31746 8.83497 9.40021 10.90698 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.005640 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.435609 B = 4963.098363 C = 6234.648448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.131 3.869 6 N -1.004 6.004 7 C 0.107 3.893 8 C -0.057 4.057 9 C 0.214 3.786 10 N -0.436 5.436 11 S 2.610 3.390 12 O -0.953 6.953 13 O -0.933 6.933 14 C -0.582 4.582 15 C 0.004 3.996 16 C -0.516 4.516 17 H 0.086 0.914 18 C 0.092 3.908 19 N -0.879 5.879 20 Si 0.870 3.130 21 H -0.275 1.275 22 H -0.255 1.255 23 H -0.289 1.289 24 C -0.174 4.174 25 C -0.186 4.186 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 18.743 3.031 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.006 3.994 6 N -0.838 5.838 7 C -0.020 4.020 8 C -0.099 4.099 9 C -0.105 4.105 10 N -0.113 5.113 11 S 2.706 3.294 12 O -0.943 6.943 13 O -0.923 6.923 14 C -0.713 4.713 15 C 0.001 3.999 16 C -0.553 4.553 17 H 0.104 0.896 18 C -0.114 4.114 19 N -0.513 5.513 20 Si 0.697 3.303 21 H -0.201 1.201 22 H -0.179 1.179 23 H -0.216 1.216 24 C -0.211 4.211 25 C -0.225 4.225 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.827 17.850 2.648 18.446 hybrid contribution 0.491 -0.066 1.796 1.864 sum -3.336 17.783 4.445 18.631 Atomic orbital electron populations 1.22090 0.94904 1.02181 1.01282 1.20947 0.95811 0.95447 0.96584 1.21816 1.01329 0.94929 1.01599 1.21987 1.02968 0.99278 0.95417 1.21379 0.99876 0.80691 0.97464 1.58027 1.24211 1.19383 1.82162 1.21512 0.84989 1.04609 0.90934 1.19920 0.86319 1.04891 0.98776 1.28896 0.94745 0.93258 0.93576 1.81226 1.12324 1.08967 1.08739 1.05279 0.74410 0.72680 0.77009 1.93541 1.66726 1.73246 1.60820 1.93587 1.64378 1.56590 1.77735 1.30412 1.12458 1.08072 1.20360 1.18818 0.84743 0.95773 1.00571 1.20341 1.45688 0.94546 0.94678 0.89597 1.24940 0.93237 0.94866 0.98311 1.69885 1.42692 1.02552 1.36213 0.86982 0.77921 0.79017 0.86335 1.20126 1.17892 1.21592 1.22983 1.01639 0.98053 0.98420 1.22978 1.05277 1.01416 0.92810 0.92777 0.92855 0.91685 0.92276 0.92537 0.92803 0.93345 0.93528 0.90245 0.90651 0.89629 0.88223 0.87578 0.87194 0.86697 0.85961 0.87509 0.92222 0.88736 0.90210 0.90674 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 6.97 37.16 0.26 -1.02 16 2 C -0.09 -0.84 0.85 -154.51 -0.13 -0.97 16 3 C -0.14 -1.09 8.47 37.16 0.31 -0.77 16 4 C -0.14 -1.77 6.88 37.16 0.26 -1.52 16 5 C 0.13 1.23 4.60 -4.04 -0.02 1.22 16 6 N -1.00 -11.97 2.11 -114.37 -0.24 -12.21 16 7 C 0.11 1.12 4.82 -4.04 -0.02 1.10 16 8 C -0.06 -0.51 6.03 -29.52 -0.18 -0.69 16 9 C 0.21 2.51 15.43 -20.76 -0.32 2.19 16 10 N -0.44 -6.38 18.54 42.15 0.78 -5.59 16 11 S 2.61 45.87 4.19 -107.50 -0.45 45.42 16 12 O -0.95 -17.76 13.50 -57.54 -0.78 -18.54 16 13 O -0.93 -20.59 15.97 -57.54 -0.92 -21.51 16 14 C -0.58 -10.15 5.77 37.16 0.21 -9.93 16 15 C 0.00 0.08 0.86 -155.66 -0.13 -0.06 16 16 C -0.52 -13.85 8.36 -34.44 -0.29 -14.14 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 19 N -0.88 -26.18 13.96 55.43 0.77 -25.40 16 20 Si 0.87 20.31 24.99 -169.99 -4.25 16.06 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.25 -5.27 5.51 56.52 0.31 -4.96 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.17 -3.33 9.94 -26.70 -0.27 -3.59 16 25 C -0.19 -3.63 7.58 -26.70 -0.20 -3.83 16 26 H 0.05 0.38 7.91 -51.92 -0.41 -0.03 16 27 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.06 0.63 5.93 -51.93 -0.31 0.32 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.72 6.24 -51.93 -0.32 0.40 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.11 6.93 -51.93 -0.36 0.75 16 35 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.09 0.80 7.49 -51.93 -0.39 0.42 16 37 H 0.10 0.83 4.83 -51.93 -0.25 0.58 16 38 H 0.11 1.34 6.83 -51.93 -0.35 0.98 16 39 H 0.11 1.01 7.16 -51.92 -0.37 0.64 16 40 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.12 2.06 5.49 -51.93 -0.29 1.78 16 42 H 0.11 1.41 8.11 -51.92 -0.42 0.99 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.09 1.89 7.27 -51.93 -0.38 1.51 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -34.14 376.96 -7.74 -41.87 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.73 Total: 3.78 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -0.61 Total: -29.56 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 1.31 Total: -43.21 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.70 Total: -40.05 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.25 Total: 16.06 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -0.45 Total: 45.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.14 -7.74 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346457178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.996 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds