Wall clock time and date at job start Tue Mar 31 2020 15:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47416 * 239.99442 * 2 1 3 5 5 C 1.53004 * 109.47046 * 119.99430 * 2 1 3 6 6 N 1.46503 * 109.46933 * 62.31772 * 5 2 1 7 7 C 1.46501 * 119.99853 * 278.22433 * 6 5 2 8 8 C 1.53008 * 109.47056 * 274.36119 * 7 6 5 9 9 C 1.47193 * 109.46951 * 180.02562 * 8 7 6 10 10 N 6.33944 * 54.27410 * 129.62519 * 2 1 3 11 11 S 1.65601 * 119.99896 * 98.22387 * 6 5 2 12 12 O 1.42100 * 104.27622 * 333.92914 * 11 6 5 13 13 O 1.42099 * 104.27747 * 206.07071 * 11 6 5 14 14 C 1.81393 * 104.44926 * 90.00008 * 11 6 5 15 15 C 1.53007 * 109.47135 * 186.17253 * 14 11 6 16 16 C 1.50704 * 115.54592 * 301.74165 * 15 14 11 17 17 H 1.08000 * 119.99956 * 92.08638 * 16 15 14 18 18 C 1.37877 * 120.00033 * 272.08369 * 16 15 14 19 19 N 1.31512 * 119.99677 * 183.15700 * 18 16 15 20 20 Si 1.86803 * 120.00070 * 3.15414 * 18 16 15 21 21 H 1.48496 * 109.47213 * 265.19844 * 20 18 16 22 22 H 1.48506 * 109.47035 * 25.19293 * 20 18 16 23 23 H 1.48497 * 109.46981 * 145.19402 * 20 18 16 24 24 C 1.52993 * 117.49936 * 87.41349 * 15 14 11 25 25 C 1.52998 * 117.49734 * 156.07421 * 15 14 11 26 26 H 1.09008 * 109.47492 * 292.27277 * 1 2 3 27 27 H 1.09005 * 109.47251 * 52.27587 * 1 2 3 28 28 H 1.09004 * 109.47013 * 172.27427 * 1 2 3 29 29 H 1.09004 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47002 * 299.99490 * 3 2 1 31 31 H 1.08998 * 109.47513 * 59.99504 * 3 2 1 32 32 H 1.08996 * 109.47302 * 300.00540 * 4 2 1 33 33 H 1.09007 * 109.46312 * 60.00018 * 4 2 1 34 34 H 1.08994 * 109.46763 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47142 * 302.32318 * 5 2 1 36 36 H 1.08996 * 109.47452 * 182.31934 * 5 2 1 37 37 H 1.08991 * 109.47445 * 34.36273 * 7 6 5 38 38 H 1.09005 * 109.46828 * 154.36842 * 7 6 5 39 39 H 1.09007 * 109.46820 * 300.00546 * 8 7 6 40 40 H 1.09000 * 109.46807 * 59.99736 * 8 7 6 41 41 H 1.08995 * 109.47430 * 66.16975 * 14 11 6 42 42 H 1.09005 * 109.47387 * 306.16788 * 14 11 6 43 43 H 0.97007 * 119.99590 * 180.02562 * 19 18 16 44 44 H 1.09007 * 117.49830 * 215.00433 * 24 15 14 45 45 H 1.09005 * 117.50181 * 0.02562 * 24 15 14 46 46 H 1.08993 * 117.50345 * 359.97399 * 25 15 14 47 47 H 1.09004 * 117.50061 * 144.97609 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7211 1.2493 6 7 1.5977 -2.1176 1.2218 7 6 0.2447 -2.4662 1.6623 8 6 0.2369 -2.6615 3.1799 9 6 -1.1224 -3.0124 3.6223 10 7 -2.1717 -3.2822 3.9640 11 16 2.6273 -3.3018 0.6928 12 8 3.5169 -2.6262 -0.1854 13 8 1.7666 -4.3276 0.2172 14 6 3.4990 -3.8448 2.1880 15 6 4.5970 -4.8393 1.8054 16 6 4.1314 -6.0719 1.0739 17 1 4.1116 -6.0839 -0.0058 18 6 3.7306 -7.1843 1.7832 19 7 3.3834 -8.2808 1.1454 20 14 3.6809 -7.1339 3.6499 21 1 4.9514 -7.6775 4.1937 22 1 3.5092 -5.7301 4.1028 23 1 2.5429 -7.9541 4.1370 24 6 5.9663 -4.2698 1.4295 25 6 5.7780 -4.9918 2.7661 26 1 -0.3634 0.3895 0.9510 27 1 -0.3634 0.6288 -0.8129 28 1 -0.3633 -1.0184 -0.1382 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6766 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2493 35 1 1.6430 -0.2318 2.1388 36 1 3.1291 -0.6853 1.2704 37 1 -0.4424 -1.6633 1.3958 38 1 -0.0692 -3.3897 1.1756 39 1 0.9241 -3.4645 3.4464 40 1 0.5509 -1.7381 3.6666 41 1 2.7935 -4.3254 2.8656 42 1 3.9464 -2.9819 2.6814 43 1 3.1011 -9.0633 1.6444 44 1 6.5305 -4.7866 0.6531 45 1 6.0852 -3.1865 1.4551 46 1 5.7731 -4.3833 3.6703 47 1 6.2181 -5.9837 2.8693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346457178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:55 Heat of formation + Delta-G solvation = -45.856928 kcal Electronic energy + Delta-G solvation = -28245.837622 eV Core-core repulsion = 24556.032775 eV Total energy + Delta-G solvation = -3689.804847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.61620 -38.77963 -38.12399 -37.58799 -36.62799 -35.64379 -34.27147 -31.85389 -30.03551 -28.21948 -28.01691 -27.58598 -26.95093 -24.13153 -23.28079 -21.15849 -20.22065 -19.34909 -18.92850 -18.38030 -18.30640 -17.16795 -17.05298 -16.70407 -15.93275 -15.66344 -15.58196 -15.46611 -15.04709 -14.81582 -14.69899 -14.54342 -14.19977 -14.00412 -13.82595 -13.66799 -13.28710 -13.15177 -13.07974 -12.99395 -12.81610 -12.73309 -12.64060 -12.55268 -12.33148 -12.29075 -12.12995 -12.01665 -11.98889 -11.72271 -11.63731 -11.57766 -11.31175 -11.22090 -10.94288 -10.66936 -10.26352 -9.76799 -8.30471 -6.44409 -0.49282 1.36278 1.36961 1.50734 1.69410 1.83142 2.06283 2.36795 3.00418 3.06857 3.10692 3.25371 3.47940 3.74826 3.96315 3.97807 4.07636 4.11689 4.15486 4.23967 4.40427 4.40464 4.47049 4.56687 4.70068 4.73046 4.80085 4.87794 4.91271 4.92063 4.98455 5.05658 5.08664 5.11580 5.17401 5.23171 5.27038 5.28859 5.39147 5.51153 5.51839 5.58103 5.65632 5.68076 5.84429 6.20720 6.60568 6.68103 7.29396 8.86089 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.005640 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.435609 B = 4963.098363 C = 6234.648448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.142 4.142 5 C 0.120 3.880 6 N -0.988 5.988 7 C 0.103 3.897 8 C -0.054 4.054 9 C 0.239 3.761 10 N -0.494 5.494 11 S 2.609 3.391 12 O -0.975 6.975 13 O -0.997 6.997 14 C -0.578 4.578 15 C -0.032 4.032 16 C -0.514 4.514 17 H 0.023 0.977 18 C 0.025 3.975 19 N -0.944 5.944 20 Si 0.927 3.073 21 H -0.267 1.267 22 H -0.198 1.198 23 H -0.300 1.300 24 C -0.169 4.169 25 C -0.171 4.171 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.168 0.832 41 H 0.133 0.867 42 H 0.166 0.834 43 H 0.266 0.734 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 23.312 7.232 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.004 4.004 6 N -0.824 5.824 7 C -0.024 4.024 8 C -0.095 4.095 9 C -0.078 4.078 10 N -0.172 5.172 11 S 2.707 3.293 12 O -0.965 6.965 13 O -0.987 6.987 14 C -0.710 4.710 15 C -0.034 4.034 16 C -0.552 4.552 17 H 0.041 0.959 18 C -0.174 4.174 19 N -0.582 5.582 20 Si 0.749 3.251 21 H -0.192 1.192 22 H -0.120 1.120 23 H -0.227 1.227 24 C -0.206 4.206 25 C -0.210 4.210 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.186 0.814 41 H 0.151 0.849 42 H 0.184 0.816 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.128 22.459 6.823 23.680 hybrid contribution 0.334 -1.439 0.248 1.498 sum -2.794 21.020 7.071 22.353 Atomic orbital electron populations 1.22106 0.94124 1.01405 1.02953 1.20985 0.96459 0.96364 0.95019 1.21778 1.01231 0.93386 1.02822 1.22004 1.01824 0.98077 0.98050 1.21833 1.00674 0.78734 0.99190 1.57466 1.23626 1.19355 1.81939 1.21604 0.84419 1.04216 0.92165 1.20145 0.84544 1.07536 0.97306 1.29378 0.94820 0.91573 0.92042 1.81259 1.14205 1.11014 1.10751 1.04881 0.74345 0.72552 0.77509 1.93508 1.67501 1.73339 1.62163 1.93517 1.66079 1.59600 1.79547 1.30289 1.11343 1.09096 1.20247 1.18744 0.86847 0.95112 1.02696 1.20488 1.44871 0.97395 0.92410 0.95861 1.25989 0.92870 0.94137 1.04421 1.70082 1.45624 1.03829 1.38676 0.86078 0.77777 0.82062 0.79177 1.19210 1.11951 1.22698 1.23071 0.99291 1.00113 0.98169 1.23088 1.02209 1.01412 0.94246 0.89889 0.92803 0.93359 0.92453 0.92737 0.90217 0.96481 0.93139 0.91954 0.85458 0.89127 0.85646 0.90903 0.86833 0.81424 0.84914 0.81621 0.92478 0.90896 0.86355 0.85963 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 6.97 71.98 0.50 -1.61 16 2 C -0.09 -1.41 0.85 -52.18 -0.04 -1.45 16 3 C -0.13 -1.56 8.47 71.98 0.61 -0.95 16 4 C -0.14 -3.60 6.88 71.98 0.49 -3.11 16 5 C 0.12 1.65 4.60 86.38 0.40 2.05 16 6 N -0.99 -20.58 2.11 -515.76 -1.09 -21.67 16 7 C 0.10 1.89 4.82 86.38 0.42 2.30 16 8 C -0.05 -0.70 6.03 28.79 0.17 -0.53 16 9 C 0.24 4.94 15.43 89.44 1.38 6.33 16 10 N -0.49 -13.79 18.54 20.00 0.37 -13.42 16 11 S 2.61 90.14 4.19 -56.49 -0.24 89.91 16 12 O -0.98 -36.43 13.50 -127.65 -1.72 -38.15 16 13 O -1.00 -46.69 15.97 -127.65 -2.04 -48.73 16 14 C -0.58 -17.82 5.77 71.98 0.42 -17.40 16 15 C -0.03 -1.30 0.86 -52.93 -0.05 -1.34 16 16 C -0.51 -28.82 8.36 25.60 0.21 -28.61 16 17 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 18 C 0.02 1.41 5.47 84.66 0.46 1.88 16 19 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 20 Si 0.93 40.85 24.99 68.60 1.71 42.56 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.20 -6.87 5.51 99.48 0.55 -6.32 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 24 C -0.17 -6.07 9.94 30.62 0.30 -5.77 16 25 C -0.17 -5.95 7.58 30.62 0.23 -5.72 16 26 H 0.08 0.72 7.91 -2.38 -0.02 0.70 16 27 H 0.05 0.76 8.13 -2.38 -0.02 0.74 16 28 H 0.05 0.85 5.93 -2.38 -0.01 0.83 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.02 0.51 6.24 -2.39 -0.01 0.50 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.06 1.76 6.93 -2.39 -0.02 1.74 16 35 H 0.13 0.55 8.13 -2.39 -0.02 0.53 16 36 H 0.09 1.23 7.49 -2.39 -0.02 1.21 16 37 H 0.13 1.66 4.83 -2.39 -0.01 1.65 16 38 H 0.07 1.86 6.83 -2.38 -0.02 1.85 16 39 H 0.11 1.52 7.16 -2.38 -0.02 1.51 16 40 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.13 3.82 5.49 -2.39 -0.01 3.81 16 42 H 0.17 3.12 8.11 -2.39 -0.02 3.10 16 43 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 44 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 45 H 0.12 3.32 8.14 -2.38 -0.02 3.31 16 46 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.07 2.83 7.27 -2.38 -0.02 2.81 16 Total: -1.00 -86.34 376.96 3.61 -82.73 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.80 Total: 20.42 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 5.51 Total: -53.93 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -0.42 Total: -94.81 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -3.76 Total: -86.88 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.71 Total: 42.56 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.24 Total: 89.91 kcal Total: -86.34 3.61 -82.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346457178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.873 kcal (2) G-P(sol) polarization free energy of solvation -86.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds