Wall clock time and date at job start Tue Mar 31 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.50695 * 110.53830 * 185.00087 * 3 2 1 5 5 C 1.38241 * 119.99972 * 139.36139 * 4 3 2 6 6 C 1.38229 * 119.99611 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00588 * 0.27595 * 6 5 4 8 8 C 1.38236 * 119.99604 * 359.51409 * 7 6 5 9 9 C 1.38231 * 119.99941 * 319.38916 * 4 3 2 10 10 N 1.47312 * 110.59597 * 307.83035 * 3 2 1 11 11 C 1.34869 * 106.43647 * 118.72554 * 10 3 2 12 12 O 1.21540 * 123.72649 * 179.97438 * 11 10 3 13 13 N 1.33784 * 112.50211 * 359.86691 * 11 10 3 14 14 C 1.46498 * 124.17845 * 180.12105 * 13 11 10 15 15 C 1.52996 * 109.47408 * 267.99316 * 14 13 11 16 16 C 1.50701 * 115.55204 * 183.79308 * 15 14 13 17 17 H 1.08000 * 120.00416 * 114.86935 * 16 15 14 18 18 C 1.37885 * 119.99720 * 294.86489 * 16 15 14 19 19 N 1.31516 * 119.99913 * 170.69233 * 18 16 15 20 20 Si 1.86802 * 119.99732 * 350.70233 * 18 16 15 21 21 H 1.48495 * 109.47138 * 93.55363 * 20 18 16 22 22 H 1.48503 * 109.46525 * 213.54762 * 20 18 16 23 23 H 1.48496 * 109.47477 * 333.54701 * 20 18 16 24 24 C 1.53001 * 117.49842 * 38.11848 * 15 14 13 25 25 C 1.53002 * 117.49662 * 329.45805 * 15 14 13 26 26 C 1.34763 * 111.64626 * 0.08212 * 13 11 10 27 27 O 1.21235 * 127.16357 * 179.97438 * 26 13 11 28 28 H 1.08994 * 109.47493 * 60.00058 * 1 2 3 29 29 H 1.09006 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47079 * 299.99732 * 1 2 3 31 31 H 1.09003 * 109.47334 * 239.99810 * 2 1 3 32 32 H 1.09002 * 109.47230 * 120.00557 * 2 1 3 33 33 H 1.07991 * 120.00019 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.99736 * 180.02562 * 6 5 4 35 35 H 1.07992 * 120.00475 * 179.72687 * 7 6 5 36 36 H 1.08003 * 120.00223 * 180.25647 * 8 7 6 37 37 H 1.08004 * 120.00183 * 359.97267 * 9 4 3 38 38 H 0.97000 * 126.69638 * 298.65427 * 10 3 2 39 39 H 1.09008 * 109.47231 * 27.99384 * 14 13 11 40 40 H 1.09004 * 109.47357 * 147.99218 * 14 13 11 41 41 H 0.96999 * 119.99891 * 185.01119 * 19 18 16 42 42 H 1.09001 * 117.49534 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.49936 * 145.02597 * 24 15 14 44 44 H 1.09001 * 117.49745 * 214.97951 * 25 15 14 45 45 H 1.08994 * 117.50018 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5417 1.4723 -0.1230 5 6 4.1506 2.4165 -0.9284 6 6 5.5281 2.4441 -1.0408 7 6 6.2964 1.5240 -0.3523 8 6 5.6877 0.5825 0.4564 9 6 4.3102 0.5550 0.5690 10 7 1.4154 2.2130 -1.0892 11 6 0.7294 3.2153 -0.5028 12 8 0.0913 4.0466 -1.1183 13 7 0.8275 3.1910 0.8312 14 6 0.1817 4.1586 1.7216 15 6 1.1432 5.3154 2.0012 16 6 0.6482 6.3504 2.9783 17 1 1.1496 6.4821 3.9258 18 6 -0.4449 7.1293 2.6627 19 7 -0.9894 7.9003 3.5785 20 14 -1.1524 7.0893 0.9343 21 1 -2.2516 6.0928 0.8723 22 1 -1.6814 8.4322 0.5850 23 1 -0.0867 6.7114 -0.0283 24 6 2.0226 5.7980 0.8459 25 6 2.6414 5.0048 1.9997 26 6 1.5932 2.1661 1.2548 27 8 1.8681 1.8821 2.4009 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5503 3.1330 -1.4691 34 1 6.0039 3.1821 -1.6697 35 1 7.3723 1.5427 -0.4436 36 1 6.2881 -0.1338 0.9976 37 1 3.8344 -0.1827 1.1983 38 1 1.4856 2.0341 -2.0399 39 1 -0.7210 4.5431 1.2469 40 1 -0.0812 3.6699 2.6599 41 1 -1.8009 8.3924 3.3782 42 1 1.9163 5.2910 -0.1132 43 1 2.2434 6.8641 0.7928 44 1 3.2690 5.5494 2.7051 45 1 2.9420 3.9765 1.7991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348649452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:19 Heat of formation + Delta-G solvation = 21.516495 kcal Electronic energy + Delta-G solvation = -29866.074559 eV Core-core repulsion = 26043.747291 eV Total energy + Delta-G solvation = -3822.327268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68712 -39.38831 -38.32852 -37.28874 -36.20334 -34.45100 -32.48057 -32.10821 -31.26866 -30.93160 -27.91497 -26.72064 -25.37152 -23.63987 -22.83625 -22.26078 -21.57225 -21.29878 -20.14155 -18.92274 -17.90831 -17.52105 -16.89849 -16.24299 -16.07305 -15.65814 -15.34685 -15.13743 -14.95665 -14.46379 -14.26604 -14.12321 -13.78803 -13.78632 -13.50438 -13.22035 -12.88889 -12.70406 -12.52997 -12.21438 -12.11608 -11.92234 -11.50912 -11.34270 -11.19988 -10.96606 -10.74887 -10.61913 -10.54992 -10.42230 -9.99633 -9.73285 -9.53452 -9.18232 -9.08736 -9.04490 -8.90050 -8.60915 -8.38232 -6.12528 -4.16242 1.03046 1.23249 1.82601 2.47344 3.14366 3.26855 3.35367 3.46250 3.56613 3.67421 4.05521 4.12999 4.44169 4.45078 4.80247 4.83385 4.85812 4.89275 4.96586 5.05459 5.21796 5.29527 5.32081 5.40031 5.45344 5.61430 5.72643 5.73118 5.74493 5.84627 5.90741 5.96373 5.99327 6.06848 6.25214 6.27817 6.31624 6.33469 6.45671 6.55522 6.77259 6.80317 6.85364 7.05951 7.17017 7.34876 7.58927 7.71348 8.32221 8.48369 8.89312 9.48398 10.96512 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.004950 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.541254 B = 5654.973204 C = 6196.112914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.164 3.836 4 C -0.093 4.093 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.093 4.093 10 N -0.725 5.725 11 C 0.701 3.299 12 O -0.532 6.532 13 N -0.567 5.567 14 C 0.144 3.856 15 C -0.008 4.008 16 C -0.486 4.486 17 H 0.081 0.919 18 C 0.083 3.917 19 N -0.891 5.891 20 Si 0.860 3.140 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.236 1.236 24 C -0.188 4.188 25 C -0.178 4.178 26 C 0.536 3.464 27 O -0.456 6.456 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.436 0.564 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.267 0.733 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -18.805 -11.159 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.072 3.928 4 C -0.094 4.094 5 C -0.114 4.114 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.111 4.111 10 N -0.391 5.391 11 C 0.402 3.598 12 O -0.404 6.404 13 N -0.311 5.311 14 C 0.025 3.975 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.099 0.901 18 C -0.121 4.121 19 N -0.527 5.527 20 Si 0.687 3.313 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.158 1.158 24 C -0.225 4.225 25 C -0.215 4.215 26 C 0.322 3.678 27 O -0.325 6.325 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.280 0.720 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.708 -18.212 -10.735 23.263 hybrid contribution -0.428 0.127 -1.290 1.365 sum 9.280 -18.085 -12.024 23.617 Atomic orbital electron populations 1.21836 0.94449 1.02619 1.02719 1.21771 0.97110 0.91820 1.04380 1.20222 0.91448 0.94468 0.86621 1.19445 0.91932 0.97986 1.00061 1.21032 0.95025 0.97297 0.98081 1.21139 0.93530 0.98935 0.99979 1.21229 0.99959 0.95200 0.96641 1.21125 0.94395 0.99239 0.99040 1.20993 0.93867 0.98156 0.98117 1.45683 1.53960 1.30644 1.08779 1.16008 0.80005 0.81758 0.81997 1.91036 1.44303 1.39178 1.65925 1.46683 1.47527 1.29064 1.07875 1.21957 0.96293 0.87562 0.91694 1.19675 0.88324 0.95265 0.97714 1.20192 1.14617 1.15278 1.02238 0.90141 1.24967 0.96094 0.94086 0.96984 1.69883 1.19706 1.29319 1.33795 0.87105 0.80725 0.77078 0.86426 1.20533 1.21821 1.15846 1.23061 1.07732 0.99369 0.92383 1.22784 0.97928 0.98465 1.02336 1.20397 0.77476 0.80178 0.89758 1.90785 1.54720 1.67529 1.19445 0.91899 0.91456 0.92588 0.89660 0.89230 0.85734 0.85754 0.85924 0.85667 0.85376 0.72012 0.89444 0.88444 0.92346 0.91538 0.89601 0.89681 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.38 37.16 0.35 -1.20 16 2 C -0.11 -1.04 4.77 -26.73 -0.13 -1.16 16 3 C 0.16 2.00 0.94 -133.25 -0.13 1.88 16 4 C -0.09 -1.09 4.88 -104.63 -0.51 -1.60 16 5 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 6 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 7 C -0.11 -1.04 10.05 -39.58 -0.40 -1.43 16 8 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 9 C -0.09 -0.97 9.19 -39.58 -0.36 -1.34 16 10 N -0.73 -8.96 3.55 -53.93 -0.19 -9.15 16 11 C 0.70 12.19 6.95 -87.72 -0.61 11.58 16 12 O -0.53 -11.13 16.85 5.33 0.09 -11.04 16 13 N -0.57 -10.51 1.87 -120.63 -0.23 -10.73 16 14 C 0.14 3.17 5.51 -4.04 -0.02 3.15 16 15 C -0.01 -0.19 1.38 -155.66 -0.22 -0.41 16 16 C -0.49 -13.66 9.38 -34.44 -0.32 -13.99 16 17 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 18 C 0.08 2.38 5.46 -17.82 -0.10 2.28 16 19 N -0.89 -27.02 13.95 55.43 0.77 -26.24 16 20 Si 0.86 22.14 25.14 -169.99 -4.27 17.86 16 21 H -0.28 -7.09 7.03 56.52 0.40 -6.70 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.24 -6.02 5.63 56.52 0.32 -5.70 16 24 C -0.19 -4.26 7.56 -26.69 -0.20 -4.46 16 25 C -0.18 -3.91 9.57 -26.69 -0.26 -4.16 16 26 C 0.54 8.89 3.95 -10.56 -0.04 8.85 16 27 O -0.46 -8.52 17.35 5.60 0.10 -8.42 16 28 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.67 7.35 -51.93 -0.38 0.29 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.78 6.94 -51.93 -0.36 0.42 16 33 H 0.12 1.49 7.12 -52.49 -0.37 1.12 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.18 6.74 -52.48 -0.35 0.82 16 38 H 0.44 4.08 8.96 -40.82 -0.37 3.71 16 39 H 0.09 2.03 4.98 -51.92 -0.26 1.78 16 40 H 0.10 2.10 8.04 -51.93 -0.42 1.68 16 41 H 0.27 7.61 8.32 -40.82 -0.34 7.27 16 42 H 0.07 1.47 5.73 -51.93 -0.30 1.17 16 43 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 44 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.06 1.35 5.43 -51.93 -0.28 1.07 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -33.54 358.78 -8.52 -42.05 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.08 Total: 6.89 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.11 Total: -6.62 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.36 Total: -46.12 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.19 Total: -19.46 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.27 Total: 17.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.54 -8.52 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348649452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.570 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds