Wall clock time and date at job start Tue Mar 31 2020 14:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.50695 * 110.53830 * 185.00087 * 3 2 1 5 5 C 1.38241 * 119.99972 * 139.36139 * 4 3 2 6 6 C 1.38229 * 119.99611 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00588 * 0.27595 * 6 5 4 8 8 C 1.38236 * 119.99604 * 359.51409 * 7 6 5 9 9 C 1.38231 * 119.99941 * 319.38916 * 4 3 2 10 10 N 1.47312 * 110.59597 * 307.83035 * 3 2 1 11 11 C 1.34869 * 106.43647 * 118.72554 * 10 3 2 12 12 O 1.21540 * 123.72649 * 179.97438 * 11 10 3 13 13 N 1.33784 * 112.50211 * 359.86691 * 11 10 3 14 14 C 1.46498 * 124.17845 * 180.12105 * 13 11 10 15 15 C 1.52996 * 109.47408 * 267.99316 * 14 13 11 16 16 C 1.50701 * 115.55204 * 183.79308 * 15 14 13 17 17 H 1.08000 * 120.00416 * 114.86935 * 16 15 14 18 18 C 1.37885 * 119.99720 * 294.86489 * 16 15 14 19 19 N 1.31516 * 119.99913 * 170.69233 * 18 16 15 20 20 Si 1.86802 * 119.99732 * 350.70233 * 18 16 15 21 21 H 1.48495 * 109.47138 * 93.55363 * 20 18 16 22 22 H 1.48503 * 109.46525 * 213.54762 * 20 18 16 23 23 H 1.48496 * 109.47477 * 333.54701 * 20 18 16 24 24 C 1.53001 * 117.49842 * 38.11848 * 15 14 13 25 25 C 1.53002 * 117.49662 * 329.45805 * 15 14 13 26 26 C 1.34763 * 111.64626 * 0.08212 * 13 11 10 27 27 O 1.21235 * 127.16357 * 179.97438 * 26 13 11 28 28 H 1.08994 * 109.47493 * 60.00058 * 1 2 3 29 29 H 1.09006 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47079 * 299.99732 * 1 2 3 31 31 H 1.09003 * 109.47334 * 239.99810 * 2 1 3 32 32 H 1.09002 * 109.47230 * 120.00557 * 2 1 3 33 33 H 1.07991 * 120.00019 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.99736 * 180.02562 * 6 5 4 35 35 H 1.07992 * 120.00475 * 179.72687 * 7 6 5 36 36 H 1.08003 * 120.00223 * 180.25647 * 8 7 6 37 37 H 1.08004 * 120.00183 * 359.97267 * 9 4 3 38 38 H 0.97000 * 126.69638 * 298.65427 * 10 3 2 39 39 H 1.09008 * 109.47231 * 27.99384 * 14 13 11 40 40 H 1.09004 * 109.47357 * 147.99218 * 14 13 11 41 41 H 0.96999 * 119.99891 * 185.01119 * 19 18 16 42 42 H 1.09001 * 117.49534 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.49936 * 145.02597 * 24 15 14 44 44 H 1.09001 * 117.49745 * 214.97951 * 25 15 14 45 45 H 1.08994 * 117.50018 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5417 1.4723 -0.1230 5 6 4.1506 2.4165 -0.9284 6 6 5.5281 2.4441 -1.0408 7 6 6.2964 1.5240 -0.3523 8 6 5.6877 0.5825 0.4564 9 6 4.3102 0.5550 0.5690 10 7 1.4154 2.2130 -1.0892 11 6 0.7294 3.2153 -0.5028 12 8 0.0913 4.0466 -1.1183 13 7 0.8275 3.1910 0.8312 14 6 0.1817 4.1586 1.7216 15 6 1.1432 5.3154 2.0012 16 6 0.6482 6.3504 2.9783 17 1 1.1496 6.4821 3.9258 18 6 -0.4449 7.1293 2.6627 19 7 -0.9894 7.9003 3.5785 20 14 -1.1524 7.0893 0.9343 21 1 -2.2516 6.0928 0.8723 22 1 -1.6814 8.4322 0.5850 23 1 -0.0867 6.7114 -0.0283 24 6 2.0226 5.7980 0.8459 25 6 2.6414 5.0048 1.9997 26 6 1.5932 2.1661 1.2548 27 8 1.8681 1.8821 2.4009 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5503 3.1330 -1.4691 34 1 6.0039 3.1821 -1.6697 35 1 7.3723 1.5427 -0.4436 36 1 6.2881 -0.1338 0.9976 37 1 3.8344 -0.1827 1.1983 38 1 1.4856 2.0341 -2.0399 39 1 -0.7210 4.5431 1.2469 40 1 -0.0812 3.6699 2.6599 41 1 -1.8009 8.3924 3.3782 42 1 1.9163 5.2910 -0.1132 43 1 2.2434 6.8641 0.7928 44 1 3.2690 5.5494 2.7051 45 1 2.9420 3.9765 1.7991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348649452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:18 Heat of formation + Delta-G solvation = 0.982825 kcal Electronic energy + Delta-G solvation = -29866.964966 eV Core-core repulsion = 26043.747291 eV Total energy + Delta-G solvation = -3823.217675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.96532 -40.33644 -39.68859 -38.87183 -37.54242 -35.84668 -34.34700 -33.46955 -32.07042 -31.70205 -29.58746 -27.94166 -27.22254 -24.81012 -23.76118 -23.24060 -23.09732 -22.66825 -21.29000 -20.76255 -19.07948 -18.96184 -18.37336 -17.64537 -17.44812 -16.93159 -16.69710 -16.42295 -16.05336 -15.90950 -15.46756 -15.35395 -14.88964 -14.85863 -14.70295 -14.59872 -14.35477 -14.29051 -14.00828 -13.69494 -13.03935 -12.93006 -12.76974 -12.72591 -12.47192 -12.39846 -12.27461 -12.16287 -12.07213 -11.84894 -11.65951 -11.32507 -11.05552 -10.98601 -10.70466 -10.52472 -10.37694 -9.84231 -9.74499 -8.38124 -6.44751 0.19564 0.48060 0.55657 1.15875 1.27451 1.35396 1.57935 1.89136 2.04049 2.29166 2.68375 2.84809 3.04246 3.14767 3.21929 3.57500 3.90209 3.91598 4.06118 4.10965 4.17053 4.18408 4.25051 4.31278 4.33376 4.34459 4.43652 4.58373 4.60074 4.69151 4.72321 4.73522 4.93428 4.96978 4.99182 5.00500 5.12903 5.19757 5.22866 5.31714 5.51741 5.53937 5.56966 5.60781 5.74337 6.01412 6.04825 6.20772 6.32241 6.60945 7.03582 7.22672 8.75164 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.004950 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.541254 B = 5654.973204 C = 6196.112914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C 0.177 3.823 4 C -0.108 4.108 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.099 4.099 10 N -0.697 5.697 11 C 0.700 3.300 12 O -0.571 6.571 13 N -0.575 5.575 14 C 0.153 3.847 15 C -0.029 4.029 16 C -0.488 4.488 17 H 0.043 0.957 18 C 0.042 3.958 19 N -0.934 5.934 20 Si 0.917 3.083 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.233 1.233 24 C -0.175 4.175 25 C -0.159 4.159 26 C 0.530 3.470 27 O -0.481 6.481 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.452 0.548 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.270 0.730 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -21.544 -13.287 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.145 4.145 3 C 0.087 3.913 4 C -0.109 4.109 5 C -0.131 4.131 6 C -0.145 4.145 7 C -0.129 4.129 8 C -0.139 4.139 9 C -0.117 4.117 10 N -0.363 5.363 11 C 0.401 3.599 12 O -0.446 6.446 13 N -0.320 5.320 14 C 0.032 3.968 15 C -0.031 4.031 16 C -0.526 4.526 17 H 0.061 0.939 18 C -0.158 4.158 19 N -0.572 5.572 20 Si 0.742 3.258 21 H -0.200 1.200 22 H -0.217 1.217 23 H -0.155 1.155 24 C -0.213 4.213 25 C -0.196 4.196 26 C 0.318 3.682 27 O -0.351 6.351 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.300 0.700 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.607 -21.011 -12.898 27.249 hybrid contribution -0.872 0.914 -0.542 1.375 sum 10.736 -20.096 -13.440 26.453 Atomic orbital electron populations 1.21860 0.94953 1.03738 1.01152 1.21878 0.96532 0.89637 1.06492 1.20288 0.92227 0.95288 0.83540 1.19409 0.91084 0.99091 1.01354 1.21085 0.95818 0.97429 0.98728 1.21387 0.93132 0.99596 1.00349 1.21588 1.01299 0.94363 0.95632 1.21484 0.94194 0.99511 0.98733 1.21222 0.94521 0.98095 0.97901 1.45513 1.52166 1.28892 1.09715 1.16067 0.80113 0.82243 0.81455 1.91006 1.46195 1.40988 1.66436 1.46595 1.48020 1.29123 1.08236 1.21422 0.95323 0.87799 0.92265 1.19587 0.89845 0.95559 0.98088 1.20292 1.14266 1.16377 1.01663 0.93903 1.25560 0.96549 0.93793 0.99893 1.69979 1.20681 1.30826 1.35701 0.86210 0.80193 0.76933 0.82461 1.20036 1.21721 1.15534 1.22952 1.06605 0.99154 0.92543 1.22730 0.96262 0.99050 1.01568 1.21185 0.76466 0.79650 0.90939 1.90764 1.55424 1.68023 1.20922 0.92243 0.89081 0.95342 0.86336 0.88245 0.86606 0.84424 0.83449 0.83168 0.84197 0.69980 0.90838 0.88913 0.92036 0.90490 0.90323 0.90020 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.38 71.98 0.68 -2.07 16 2 C -0.11 -1.62 4.77 30.59 0.15 -1.48 16 3 C 0.18 3.92 0.94 2.24 0.00 3.92 16 4 C -0.11 -2.23 4.88 -19.87 -0.10 -2.33 16 5 C -0.11 -2.35 9.36 22.27 0.21 -2.14 16 6 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 7 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 8 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 9 C -0.10 -1.74 9.19 22.27 0.20 -1.54 16 10 N -0.70 -15.78 3.55 -442.77 -1.57 -17.35 16 11 C 0.70 23.61 6.95 179.33 1.25 24.86 16 12 O -0.57 -23.45 16.85 -3.84 -0.06 -23.51 16 13 N -0.58 -21.03 1.87 -772.81 -1.45 -22.48 16 14 C 0.15 6.82 5.51 86.38 0.48 7.29 16 15 C -0.03 -1.42 1.38 -52.93 -0.07 -1.49 16 16 C -0.49 -28.37 9.38 25.60 0.24 -28.13 16 17 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 18 C 0.04 2.48 5.46 84.66 0.46 2.95 16 19 N -0.93 -58.31 13.95 21.45 0.30 -58.02 16 20 Si 0.92 46.78 25.14 68.60 1.72 48.51 16 21 H -0.27 -13.70 7.03 99.48 0.70 -13.00 16 22 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 23 H -0.23 -11.65 5.63 99.48 0.56 -11.09 16 24 C -0.18 -7.85 7.56 30.62 0.23 -7.62 16 25 C -0.16 -6.93 9.57 30.62 0.29 -6.64 16 26 C 0.53 16.98 3.95 87.94 0.35 17.32 16 27 O -0.48 -17.63 17.35 -2.89 -0.05 -17.68 16 28 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.03 0.64 7.35 -2.39 -0.02 0.62 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.39 6.94 -2.39 -0.02 1.37 16 33 H 0.12 2.56 7.12 -2.92 -0.02 2.54 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 2.07 6.74 -2.91 -0.02 2.05 16 38 H 0.45 7.29 8.96 -92.71 -0.83 6.46 16 39 H 0.07 3.46 4.98 -2.38 -0.01 3.45 16 40 H 0.09 4.12 8.04 -2.38 -0.02 4.10 16 41 H 0.27 15.82 8.32 -92.71 -0.77 15.05 16 42 H 0.08 3.31 5.73 -2.39 -0.01 3.30 16 43 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.08 3.23 5.43 -2.39 -0.01 3.21 16 Total: -1.00 -74.60 358.78 3.97 -70.63 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.04 Total: 22.00 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.03 Total: -2.10 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -2.72 Total: -97.85 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.11 Total: -41.19 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.72 Total: 48.51 kcal Total: -74.60 3.97 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348649452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.615 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds