Wall clock time and date at job start Tue Mar 31 2020 15:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32625 * 119.99574 * 2 1 4 4 C 1.47743 * 120.00149 * 5.22777 * 3 2 1 5 5 C 1.39610 * 120.06407 * 314.60726 * 4 3 2 6 6 C 1.37789 * 119.93379 * 179.76518 * 5 4 3 7 7 C 1.39067 * 120.06481 * 0.53768 * 6 5 4 8 8 N 1.39584 * 119.93419 * 179.71707 * 7 6 5 9 9 C 1.34779 * 119.99740 * 207.32207 * 8 7 6 10 10 O 1.21377 * 120.00045 * 4.85109 * 9 8 7 11 11 C 1.49340 * 119.99696 * 184.85168 * 9 8 7 12 12 O 1.21364 * 119.99941 * 5.03402 * 11 9 8 13 13 N 1.34770 * 119.99758 * 185.03733 * 11 9 8 14 14 C 1.46506 * 119.99890 * 185.01622 * 13 11 9 15 15 C 1.53007 * 109.47022 * 184.99343 * 14 13 11 16 16 C 1.50697 * 115.54975 * 65.05067 * 15 14 13 17 17 H 1.07999 * 120.00002 * 274.46249 * 16 15 14 18 18 C 1.37871 * 120.00322 * 94.46899 * 16 15 14 19 19 N 1.31523 * 119.99747 * 4.84071 * 18 16 15 20 20 Si 1.86793 * 120.00300 * 184.84156 * 18 16 15 21 21 H 1.48498 * 109.47253 * 59.99538 * 20 18 16 22 22 H 1.48503 * 109.47321 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47181 * 299.99734 * 20 18 16 24 24 C 1.52997 * 117.49535 * 279.37790 * 15 14 13 25 25 C 1.52995 * 117.49387 * 210.72137 * 15 14 13 26 26 C 1.39070 * 120.13208 * 359.69830 * 7 6 5 27 27 C 1.37785 * 120.06319 * 0.04195 * 26 7 6 28 28 H 1.08993 * 109.47614 * 304.84738 * 1 2 3 29 29 H 1.08998 * 109.47240 * 64.85045 * 1 2 3 30 30 H 1.09002 * 109.46791 * 184.84769 * 1 2 3 31 31 H 1.07992 * 120.00717 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.99981 * 185.22326 * 3 2 1 33 33 H 1.08007 * 120.03589 * 0.02562 * 5 4 3 34 34 H 1.08006 * 119.96858 * 180.23231 * 6 5 4 35 35 H 0.97003 * 120.00118 * 27.32794 * 8 7 6 36 36 H 0.97006 * 120.00585 * 5.01892 * 13 11 9 37 37 H 1.09003 * 109.47125 * 304.98763 * 14 13 11 38 38 H 1.08997 * 109.47241 * 64.99194 * 14 13 11 39 39 H 0.96997 * 119.99848 * 175.00894 * 19 18 16 40 40 H 1.08999 * 117.50164 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49674 * 145.02478 * 24 15 14 42 42 H 1.09010 * 117.49799 * 214.97579 * 25 15 14 43 43 H 1.08994 * 117.50409 * 359.97438 * 25 15 14 44 44 H 1.07994 * 119.97035 * 180.02562 * 26 7 6 45 45 H 1.08007 * 120.03073 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1486 0.0000 4 6 1.4358 2.4254 0.1166 5 6 0.2871 2.6438 -0.6462 6 6 -0.3982 3.8337 -0.5318 7 6 0.0595 4.8209 0.3342 8 7 -0.6336 6.0275 0.4435 9 6 0.0206 7.1504 0.8009 10 8 1.2261 7.1317 0.9418 11 6 -0.7377 8.4176 1.0234 12 8 -1.9502 8.4161 0.9723 13 7 -0.0754 9.5628 1.2809 14 6 -0.8196 10.7817 1.6077 15 6 0.1537 11.9557 1.7316 16 6 0.8695 12.3432 0.4633 17 1 1.7802 11.8360 0.1807 18 6 0.3620 13.3452 -0.3362 19 7 -0.6924 14.0275 0.0543 20 14 1.1720 13.7339 -1.9739 21 1 1.1363 12.5297 -2.8419 22 1 0.4406 14.8434 -2.6369 23 1 2.5826 14.1375 -1.7450 24 6 0.9193 12.1026 3.0481 25 6 -0.2116 13.0762 2.7072 26 6 1.2062 4.6081 1.0917 27 6 1.8928 3.4182 0.9854 28 1 -0.3634 0.5871 0.8433 29 1 -0.3633 0.4367 -0.9302 30 1 -0.3633 -1.0240 0.0868 31 1 2.0470 -0.9352 -0.0004 32 1 3.2466 1.1506 -0.0851 33 1 -0.0664 1.8793 -1.3223 34 1 -1.2891 4.0018 -1.1189 35 1 -1.5861 6.0579 0.2625 36 1 0.8940 9.5800 1.2499 37 1 -1.5410 10.9898 0.8174 38 1 -1.3453 10.6442 2.5526 39 1 -1.0060 14.7792 -0.4724 40 1 0.7299 11.3627 3.8257 41 1 1.9406 12.4800 2.9969 42 1 0.0662 14.0937 2.4319 43 1 -1.1455 12.9773 3.2604 44 1 1.5592 5.3764 1.7636 45 1 2.7830 3.2534 1.5743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354965380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:35 Heat of formation + Delta-G solvation = 4.404786 kcal Electronic energy + Delta-G solvation = -26502.562569 eV Core-core repulsion = 22679.493282 eV Total energy + Delta-G solvation = -3823.069287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99442 -39.45890 -38.27225 -36.79686 -36.07386 -34.26936 -33.38493 -31.94943 -31.25122 -29.72395 -27.60608 -26.90421 -25.50099 -24.09696 -23.03156 -21.99672 -21.13848 -20.01067 -19.57637 -19.47810 -18.41835 -17.54891 -16.33917 -16.17025 -16.03477 -15.88734 -15.25729 -14.91278 -14.76076 -14.56318 -14.32677 -14.05449 -13.86321 -13.81680 -13.27269 -13.03617 -12.90718 -12.77927 -12.69426 -12.07751 -12.00153 -11.61394 -11.58164 -11.47937 -11.04289 -10.98536 -10.97524 -10.58448 -10.54730 -10.22984 -9.64585 -9.51164 -9.37899 -9.17601 -9.08432 -8.56007 -8.47601 -8.21358 -7.98532 -6.10157 -4.21309 0.73395 1.25627 1.58984 2.11261 2.46611 3.26142 3.31488 3.34340 3.36652 3.69894 3.82952 4.32979 4.53918 4.60623 4.72248 4.74982 4.83349 4.97256 5.12828 5.15650 5.29592 5.33691 5.35388 5.41605 5.53462 5.69642 5.82627 5.92020 5.99387 6.09084 6.21223 6.24621 6.27221 6.33855 6.38510 6.41952 6.53829 6.58217 6.72159 6.81004 6.89577 7.05725 7.09611 7.30415 7.55295 7.66408 7.77805 7.95872 8.28100 8.36941 8.80621 9.46102 10.95106 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002265 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.337134 B =12360.058211 C =12726.973768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.151 4.151 3 C -0.122 4.122 4 C -0.079 4.079 5 C -0.096 4.096 6 C -0.147 4.147 7 C 0.151 3.849 8 N -0.648 5.648 9 C 0.509 3.491 10 O -0.497 6.497 11 C 0.498 3.502 12 O -0.535 6.535 13 N -0.663 5.663 14 C 0.158 3.842 15 C 0.013 3.987 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.876 5.876 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.213 4.213 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.087 4.087 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.145 0.855 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -23.501 0.976 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.114 4.114 6 C -0.168 4.168 7 C 0.056 3.944 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.370 6.370 11 C 0.277 3.723 12 O -0.414 6.414 13 N -0.312 5.312 14 C 0.035 3.965 15 C 0.013 3.987 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.132 4.132 19 N -0.512 5.512 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.250 4.250 25 C -0.168 4.168 26 C -0.147 4.147 27 C -0.105 4.105 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.261 0.739 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.162 0.838 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.027 -23.258 1.006 23.302 hybrid contribution 0.421 0.384 -1.063 1.206 sum 1.449 -22.874 -0.057 22.920 Atomic orbital electron populations 1.21156 0.93292 1.02058 1.02495 1.23265 0.96369 0.97390 0.99848 1.21635 0.99066 0.91358 1.01930 1.19022 0.95898 0.94554 0.98480 1.21264 0.94580 0.96621 0.98906 1.20807 1.02344 0.94251 0.99359 1.17890 0.94504 0.85543 0.96428 1.43209 1.13583 1.06047 1.66508 1.20706 0.87688 0.85164 0.77288 1.90742 1.13705 1.85133 1.47401 1.19680 0.87659 0.84761 0.80236 1.90744 1.13200 1.85891 1.51520 1.45878 1.12072 1.08306 1.64978 1.21320 0.94451 0.81732 0.98962 1.19054 0.96527 0.93317 0.89843 1.20309 1.09080 1.20060 1.04210 0.92158 1.24995 0.94481 0.95900 0.97783 1.69988 1.23441 1.18992 1.38776 0.86663 0.79400 0.77999 0.83989 1.20127 1.21233 1.20193 1.23101 0.97256 1.04032 1.00609 1.22446 0.95870 0.96713 1.01756 1.21300 0.95500 0.98137 0.99812 1.21114 0.99451 0.92033 0.97917 0.91273 0.90834 0.92425 0.86833 0.86333 0.84836 0.85381 0.73915 0.75013 0.90572 0.93555 0.92782 0.91771 0.90189 0.88665 0.91891 0.83759 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.45 36.00 0.30 -0.54 16 2 C -0.15 -1.04 10.31 -36.21 -0.37 -1.41 16 3 C -0.12 -0.98 9.75 -37.60 -0.37 -1.35 16 4 C -0.08 -0.77 5.24 -104.98 -0.55 -1.32 16 5 C -0.10 -0.88 8.06 -39.23 -0.32 -1.20 16 6 C -0.15 -1.48 9.93 -39.44 -0.39 -1.87 16 7 C 0.15 1.86 6.39 -83.71 -0.53 1.32 16 8 N -0.65 -8.36 5.33 -10.27 -0.05 -8.42 16 9 C 0.51 8.01 7.67 -11.64 -0.09 7.92 16 10 O -0.50 -8.51 13.76 5.47 0.08 -8.44 16 11 C 0.50 8.93 7.88 -11.64 -0.09 8.84 16 12 O -0.53 -10.45 16.48 5.48 0.09 -10.36 16 13 N -0.66 -12.67 5.44 -60.76 -0.33 -13.00 16 14 C 0.16 3.37 5.53 -4.03 -0.02 3.35 16 15 C 0.01 0.31 1.62 -155.66 -0.25 0.06 16 16 C -0.50 -12.80 8.77 -34.44 -0.30 -13.10 16 17 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 18 C 0.07 1.91 5.41 -17.82 -0.10 1.81 16 19 N -0.88 -23.81 11.81 55.43 0.65 -23.15 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 25 C -0.13 -2.92 8.84 -26.70 -0.24 -3.15 16 26 C -0.13 -1.61 8.67 -39.44 -0.34 -1.96 16 27 C -0.09 -0.93 9.77 -39.23 -0.38 -1.32 16 28 H 0.07 0.50 7.61 -51.93 -0.40 0.11 16 29 H 0.07 0.42 5.50 -51.93 -0.29 0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.96 5.33 -52.48 -0.28 0.68 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.42 4.72 8.29 -40.82 -0.34 4.38 16 36 H 0.41 7.74 7.95 -40.82 -0.32 7.42 16 37 H 0.08 1.82 8.10 -51.93 -0.42 1.40 16 38 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.09 2.34 7.55 -51.92 -0.39 1.95 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.14 2.01 5.93 -52.49 -0.31 1.70 16 45 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -28.87 381.20 -9.25 -38.11 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.10 Total: 12.44 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -4.31 Total: -8.57 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.27 Total: -44.57 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.87 -9.25 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354965380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.520 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds