Wall clock time and date at job start Tue Mar 31 2020 15:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32625 * 119.99574 * 2 1 4 4 C 1.47743 * 120.00149 * 5.22777 * 3 2 1 5 5 C 1.39610 * 120.06407 * 314.60726 * 4 3 2 6 6 C 1.37789 * 119.93379 * 179.76518 * 5 4 3 7 7 C 1.39067 * 120.06481 * 0.53768 * 6 5 4 8 8 N 1.39584 * 119.93419 * 179.71707 * 7 6 5 9 9 C 1.34779 * 119.99740 * 207.32207 * 8 7 6 10 10 O 1.21377 * 120.00045 * 4.85109 * 9 8 7 11 11 C 1.49340 * 119.99696 * 184.85168 * 9 8 7 12 12 O 1.21364 * 119.99941 * 5.03402 * 11 9 8 13 13 N 1.34770 * 119.99758 * 185.03733 * 11 9 8 14 14 C 1.46506 * 119.99890 * 185.01622 * 13 11 9 15 15 C 1.53007 * 109.47022 * 184.99343 * 14 13 11 16 16 C 1.50697 * 115.54975 * 65.05067 * 15 14 13 17 17 H 1.07999 * 120.00002 * 274.46249 * 16 15 14 18 18 C 1.37871 * 120.00322 * 94.46899 * 16 15 14 19 19 N 1.31523 * 119.99747 * 4.84071 * 18 16 15 20 20 Si 1.86793 * 120.00300 * 184.84156 * 18 16 15 21 21 H 1.48498 * 109.47253 * 59.99538 * 20 18 16 22 22 H 1.48503 * 109.47321 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47181 * 299.99734 * 20 18 16 24 24 C 1.52997 * 117.49535 * 279.37790 * 15 14 13 25 25 C 1.52995 * 117.49387 * 210.72137 * 15 14 13 26 26 C 1.39070 * 120.13208 * 359.69830 * 7 6 5 27 27 C 1.37785 * 120.06319 * 0.04195 * 26 7 6 28 28 H 1.08993 * 109.47614 * 304.84738 * 1 2 3 29 29 H 1.08998 * 109.47240 * 64.85045 * 1 2 3 30 30 H 1.09002 * 109.46791 * 184.84769 * 1 2 3 31 31 H 1.07992 * 120.00717 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.99981 * 185.22326 * 3 2 1 33 33 H 1.08007 * 120.03589 * 0.02562 * 5 4 3 34 34 H 1.08006 * 119.96858 * 180.23231 * 6 5 4 35 35 H 0.97003 * 120.00118 * 27.32794 * 8 7 6 36 36 H 0.97006 * 120.00585 * 5.01892 * 13 11 9 37 37 H 1.09003 * 109.47125 * 304.98763 * 14 13 11 38 38 H 1.08997 * 109.47241 * 64.99194 * 14 13 11 39 39 H 0.96997 * 119.99848 * 175.00894 * 19 18 16 40 40 H 1.08999 * 117.50164 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49674 * 145.02478 * 24 15 14 42 42 H 1.09010 * 117.49799 * 214.97579 * 25 15 14 43 43 H 1.08994 * 117.50409 * 359.97438 * 25 15 14 44 44 H 1.07994 * 119.97035 * 180.02562 * 26 7 6 45 45 H 1.08007 * 120.03073 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1486 0.0000 4 6 1.4358 2.4254 0.1166 5 6 0.2871 2.6438 -0.6462 6 6 -0.3982 3.8337 -0.5318 7 6 0.0595 4.8209 0.3342 8 7 -0.6336 6.0275 0.4435 9 6 0.0206 7.1504 0.8009 10 8 1.2261 7.1317 0.9418 11 6 -0.7377 8.4176 1.0234 12 8 -1.9502 8.4161 0.9723 13 7 -0.0754 9.5628 1.2809 14 6 -0.8196 10.7817 1.6077 15 6 0.1537 11.9557 1.7316 16 6 0.8695 12.3432 0.4633 17 1 1.7802 11.8360 0.1807 18 6 0.3620 13.3452 -0.3362 19 7 -0.6924 14.0275 0.0543 20 14 1.1720 13.7339 -1.9739 21 1 1.1363 12.5297 -2.8419 22 1 0.4406 14.8434 -2.6369 23 1 2.5826 14.1375 -1.7450 24 6 0.9193 12.1026 3.0481 25 6 -0.2116 13.0762 2.7072 26 6 1.2062 4.6081 1.0917 27 6 1.8928 3.4182 0.9854 28 1 -0.3634 0.5871 0.8433 29 1 -0.3633 0.4367 -0.9302 30 1 -0.3633 -1.0240 0.0868 31 1 2.0470 -0.9352 -0.0004 32 1 3.2466 1.1506 -0.0851 33 1 -0.0664 1.8793 -1.3223 34 1 -1.2891 4.0018 -1.1189 35 1 -1.5861 6.0579 0.2625 36 1 0.8940 9.5800 1.2499 37 1 -1.5410 10.9898 0.8174 38 1 -1.3453 10.6442 2.5526 39 1 -1.0060 14.7792 -0.4724 40 1 0.7299 11.3627 3.8257 41 1 1.9406 12.4800 2.9969 42 1 0.0662 14.0937 2.4319 43 1 -1.1455 12.9773 3.2604 44 1 1.5592 5.3764 1.7636 45 1 2.7830 3.2534 1.5743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354965380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:34 Heat of formation + Delta-G solvation = -11.694031 kcal Electronic energy + Delta-G solvation = -26503.260666 eV Core-core repulsion = 22679.493282 eV Total energy + Delta-G solvation = -3823.767384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17780 -40.58337 -39.48807 -38.51156 -36.99455 -35.34720 -34.72589 -33.91344 -32.05219 -30.55282 -28.86912 -27.94231 -27.34881 -25.33217 -23.88684 -23.07218 -22.76939 -21.45953 -21.14966 -20.12424 -19.78654 -18.67553 -17.95839 -17.57142 -17.16878 -16.77816 -16.67608 -16.46813 -16.00701 -15.72443 -15.52144 -15.25844 -14.93760 -14.79748 -14.56144 -14.47583 -13.89477 -13.73724 -13.63595 -13.48583 -13.41647 -12.94361 -12.83650 -12.76707 -12.58528 -12.41890 -12.34904 -11.98803 -11.72249 -11.50319 -11.40825 -11.02349 -10.76943 -10.42267 -10.21638 -10.17305 -9.96719 -9.91023 -8.81678 -8.10120 -6.25124 -0.20685 0.44380 0.45529 1.19825 1.40769 1.43061 1.43781 1.48950 2.05070 2.40127 2.56914 2.85227 3.14265 3.30177 3.58280 3.88786 3.90904 3.99255 4.19507 4.26366 4.36839 4.44531 4.50522 4.50838 4.52020 4.60775 4.67107 4.83354 4.87377 4.99096 5.04061 5.06683 5.12251 5.22937 5.27800 5.30870 5.31726 5.36363 5.53868 5.55401 5.73651 5.76499 5.77600 5.87245 5.93913 6.02729 6.34413 6.35787 6.64215 6.81330 6.88901 7.43894 8.94271 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002265 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.337134 B =12360.058211 C =12726.973768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C -0.144 4.144 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.140 4.140 7 C 0.123 3.877 8 N -0.631 5.631 9 C 0.514 3.486 10 O -0.515 6.515 11 C 0.501 3.499 12 O -0.551 6.551 13 N -0.666 5.666 14 C 0.172 3.828 15 C -0.010 4.010 16 C -0.507 4.507 17 H 0.056 0.944 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.184 4.184 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.098 4.098 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.431 0.569 36 H 0.416 0.584 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -26.275 0.432 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.162 4.162 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.160 4.160 7 C 0.029 3.971 8 N -0.277 5.277 9 C 0.297 3.703 10 O -0.390 6.390 11 C 0.281 3.719 12 O -0.431 6.431 13 N -0.315 5.315 14 C 0.049 3.951 15 C -0.010 4.010 16 C -0.545 4.545 17 H 0.074 0.926 18 C -0.175 4.175 19 N -0.539 5.539 20 Si 0.772 3.228 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.221 4.221 25 C -0.175 4.175 26 C -0.164 4.164 27 C -0.116 4.116 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.270 0.730 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.143 0.857 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.355 -26.071 0.458 26.111 hybrid contribution 0.319 1.059 -0.885 1.416 sum 1.674 -25.012 -0.427 25.072 Atomic orbital electron populations 1.21222 0.92941 1.02902 1.02430 1.23540 0.96796 0.97700 0.97355 1.21694 0.99604 0.90860 1.04008 1.19311 0.95863 0.94878 0.97342 1.21601 0.94195 0.96786 0.98846 1.21080 1.02819 0.93649 0.98437 1.18077 0.95141 0.85713 0.98149 1.43050 1.13886 1.05564 1.65242 1.20170 0.87229 0.85002 0.77942 1.90745 1.14176 1.85264 1.48777 1.20021 0.87500 0.85203 0.79179 1.90728 1.14029 1.86314 1.52016 1.45768 1.12036 1.08134 1.65582 1.20944 0.93585 0.82191 0.98362 1.19113 0.97749 0.94220 0.89964 1.20591 1.08940 1.19666 1.05290 0.92597 1.25644 0.95179 0.96205 1.00452 1.70091 1.24616 1.19459 1.39760 0.85804 0.78743 0.77536 0.80676 1.20250 1.21183 1.19631 1.23071 0.96500 1.03101 0.99453 1.22349 0.97345 0.95513 1.02279 1.21265 0.96274 0.98593 1.00247 1.21285 0.99919 0.91824 0.98587 0.92275 0.90000 0.91075 0.85015 0.85460 0.82398 0.83126 0.72985 0.74761 0.93742 0.92329 0.93047 0.89095 0.90235 0.91229 0.90629 0.85652 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.45 71.23 0.60 -0.73 16 2 C -0.14 -1.46 10.31 24.52 0.25 -1.20 16 3 C -0.14 -1.98 9.75 23.62 0.23 -1.75 16 4 C -0.07 -1.30 5.24 -20.10 -0.11 -1.41 16 5 C -0.10 -1.54 8.06 22.49 0.18 -1.36 16 6 C -0.14 -2.53 9.93 22.36 0.22 -2.31 16 7 C 0.12 2.93 6.39 38.31 0.24 3.18 16 8 N -0.63 -15.99 5.33 -304.74 -1.62 -17.62 16 9 C 0.51 16.22 7.67 87.23 0.67 16.89 16 10 O -0.51 -17.84 13.76 -3.33 -0.05 -17.88 16 11 C 0.50 18.01 7.88 87.24 0.69 18.70 16 12 O -0.55 -21.55 16.48 -3.29 -0.05 -21.61 16 13 N -0.67 -25.53 5.44 -464.50 -2.53 -28.05 16 14 C 0.17 7.42 5.53 86.38 0.48 7.89 16 15 C -0.01 -0.45 1.62 -52.93 -0.09 -0.53 16 16 C -0.51 -26.24 8.77 25.60 0.22 -26.01 16 17 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 18 C 0.03 1.40 5.41 84.65 0.46 1.85 16 19 N -0.90 -49.94 11.81 21.45 0.25 -49.69 16 20 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.18 -7.36 9.96 30.62 0.30 -7.06 16 25 C -0.14 -6.15 8.84 30.62 0.27 -5.88 16 26 C -0.14 -3.64 8.67 22.36 0.19 -3.45 16 27 C -0.10 -2.04 9.77 22.50 0.22 -1.82 16 28 H 0.06 0.71 7.61 -2.39 -0.02 0.70 16 29 H 0.08 0.65 5.50 -2.39 -0.01 0.64 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.13 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.16 1.72 5.33 -2.91 -0.02 1.70 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.43 9.26 8.29 -92.71 -0.77 8.49 16 36 H 0.42 15.62 7.95 -92.70 -0.74 14.88 16 37 H 0.04 2.18 8.10 -2.39 -0.02 2.16 16 38 H 0.06 2.35 8.09 -2.39 -0.02 2.33 16 39 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 40 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.07 3.48 7.55 -2.38 -0.02 3.46 16 43 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.13 3.62 5.93 -2.91 -0.02 3.60 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -62.12 381.20 2.61 -59.52 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.47 Total: 35.53 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.05 Total: -5.00 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.90 Total: -95.36 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.10 Total: -39.49 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -62.12 2.61 -59.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354965380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.822 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds