Wall clock time and date at job start Tue Mar 31 2020 15:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32623 * 119.99963 * 2 1 4 4 C 1.47748 * 120.00061 * 180.02562 * 3 2 1 5 5 C 1.39610 * 120.07062 * 179.97438 * 4 3 2 6 6 C 1.37785 * 119.93979 * 179.97438 * 5 4 3 7 7 C 1.39072 * 120.06199 * 0.02562 * 6 5 4 8 8 N 1.39576 * 119.93264 * 179.97438 * 7 6 5 9 9 C 1.34782 * 120.00173 * 144.45782 * 8 7 6 10 10 O 1.21384 * 119.99680 * 4.76824 * 9 8 7 11 11 C 1.49330 * 120.00234 * 184.76675 * 9 8 7 12 12 O 1.21365 * 120.00131 * 5.11490 * 11 9 8 13 13 N 1.34780 * 120.00367 * 185.11405 * 11 9 8 14 14 C 1.46488 * 120.00295 * 185.05519 * 13 11 9 15 15 C 1.52999 * 109.47287 * 184.72844 * 14 13 11 16 16 C 1.50699 * 115.55288 * 303.96606 * 15 14 13 17 17 H 1.07996 * 120.00229 * 95.18443 * 16 15 14 18 18 C 1.37883 * 119.99644 * 274.91896 * 16 15 14 19 19 N 1.31515 * 120.00029 * 355.50880 * 18 16 15 20 20 Si 1.86796 * 119.99859 * 175.51546 * 18 16 15 21 21 H 1.48499 * 109.47446 * 89.99572 * 20 18 16 22 22 H 1.48498 * 109.47126 * 209.99735 * 20 18 16 23 23 H 1.48502 * 109.47078 * 329.99650 * 20 18 16 24 24 C 1.53007 * 117.49594 * 89.63236 * 15 14 13 25 25 C 1.53001 * 117.49942 * 158.29047 * 15 14 13 26 26 C 1.39069 * 120.13222 * 0.23365 * 7 6 5 27 27 C 1.37787 * 120.06419 * 359.48913 * 26 7 6 28 28 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47056 * 300.00634 * 1 2 3 30 30 H 1.08994 * 109.46802 * 60.00222 * 1 2 3 31 31 H 1.07997 * 120.00141 * 179.97438 * 2 1 3 32 32 H 1.07995 * 120.00398 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.03082 * 359.95218 * 5 4 3 34 34 H 1.07993 * 119.96984 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00412 * 324.46382 * 8 7 6 36 36 H 0.97000 * 119.99188 * 5.06042 * 13 11 9 37 37 H 1.09005 * 109.46999 * 64.73327 * 14 13 11 38 38 H 1.09000 * 109.47432 * 304.73185 * 14 13 11 39 39 H 0.96999 * 120.00114 * 185.00672 * 19 18 16 40 40 H 1.09004 * 117.49596 * 215.00414 * 24 15 14 41 41 H 1.08994 * 117.49771 * 0.02648 * 24 15 14 42 42 H 1.08996 * 117.49882 * 359.97438 * 25 15 14 43 43 H 1.09002 * 117.50016 * 144.97429 * 25 15 14 44 44 H 1.08004 * 119.96689 * 179.74819 * 26 7 6 45 45 H 1.07999 * 120.03379 * 180.25775 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1701 1.1486 0.0000 4 6 3.6476 1.1486 -0.0006 5 6 4.3471 2.3568 -0.0011 6 6 5.7250 2.3537 -0.0011 7 6 6.4189 1.1484 -0.0011 8 7 7.8147 1.1484 -0.0017 9 6 8.4889 0.1988 0.6768 10 8 7.8853 -0.7057 1.2162 11 6 9.9783 0.2595 0.7650 12 8 10.5751 1.2115 0.3062 13 7 10.6600 -0.7430 1.3540 14 6 12.1089 -0.6334 1.5398 15 6 12.6494 -1.9426 2.1185 16 6 12.0133 -2.3950 3.4076 17 1 11.1971 -3.1020 3.3880 18 6 12.4771 -1.9106 4.6123 19 7 13.5301 -1.1233 4.6429 20 14 11.6099 -2.3728 6.2009 21 1 12.2125 -3.6135 6.7510 22 1 11.7598 -1.2711 7.1853 23 1 10.1679 -2.6012 5.9293 24 6 13.0878 -3.0244 1.1293 25 6 14.1371 -2.2409 1.9220 26 6 5.7249 -0.0567 -0.0060 27 6 4.3471 -0.0598 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0470 -0.9353 0.0004 32 1 1.6302 2.0839 -0.0004 33 1 3.8087 3.2931 -0.0019 34 1 6.2666 3.2880 -0.0011 35 1 8.2996 1.8319 -0.4902 36 1 10.1910 -1.5370 1.6548 37 1 12.3263 0.1845 2.2268 38 1 12.5847 -0.4371 0.5790 39 1 13.9002 -0.8412 5.4940 40 1 12.9162 -4.0633 1.4110 41 1 12.9916 -2.8032 0.0664 42 1 14.7307 -1.5047 1.3801 43 1 14.6559 -2.7640 2.7253 44 1 6.2665 -0.9911 -0.0101 45 1 3.8087 -0.9960 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354965381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:38 Heat of formation + Delta-G solvation = -5.715860 kcal Electronic energy + Delta-G solvation = -26368.139381 eV Core-core repulsion = 22544.631230 eV Total energy + Delta-G solvation = -3823.508151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90918 -39.36294 -38.16432 -36.77523 -35.92387 -34.32852 -33.34568 -32.01549 -31.16710 -30.36195 -27.43307 -26.46758 -25.45558 -23.85097 -23.30047 -21.85085 -21.16816 -20.02052 -19.70589 -19.44316 -18.36011 -17.53603 -16.63007 -16.20638 -15.99894 -15.66057 -15.11075 -14.84199 -14.63459 -14.53196 -14.05360 -13.88364 -13.72324 -13.65561 -13.33304 -13.27545 -12.97004 -12.93366 -12.75185 -12.02017 -11.98204 -11.67852 -11.59094 -11.35595 -11.18657 -11.02826 -10.97456 -10.75638 -10.54941 -10.27558 -9.67478 -9.58153 -9.34931 -9.12462 -9.09075 -8.61225 -8.45644 -8.18959 -7.88668 -6.12555 -4.22815 0.62374 1.26360 1.61306 2.27470 2.54122 3.24762 3.32978 3.36948 3.43744 3.76122 3.90305 4.33069 4.44981 4.58467 4.78767 4.80411 4.87881 5.02328 5.15188 5.18625 5.26539 5.28170 5.29050 5.37752 5.44105 5.61509 5.83708 5.91594 6.03577 6.12971 6.17346 6.22821 6.27229 6.36655 6.37736 6.41741 6.62437 6.63045 6.71175 6.81588 6.92668 7.04453 7.08501 7.26411 7.46152 7.71168 7.77473 8.02882 8.26540 8.42909 8.79646 9.45583 10.94346 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.002427 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.395097 B =11534.058748 C =12429.056914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.154 4.154 3 C -0.120 4.120 4 C -0.074 4.074 5 C -0.092 4.092 6 C -0.140 4.140 7 C 0.146 3.854 8 N -0.651 5.651 9 C 0.509 3.491 10 O -0.496 6.496 11 C 0.497 3.503 12 O -0.539 6.539 13 N -0.660 5.660 14 C 0.159 3.841 15 C 0.019 3.981 16 C -0.502 4.502 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.210 4.210 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.422 0.578 36 H 0.416 0.584 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.142 0.858 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.154 5.263 -10.955 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C -0.138 4.138 4 C -0.074 4.074 5 C -0.110 4.110 6 C -0.160 4.160 7 C 0.052 3.948 8 N -0.298 5.298 9 C 0.291 3.709 10 O -0.369 6.369 11 C 0.276 3.724 12 O -0.418 6.418 13 N -0.309 5.309 14 C 0.036 3.964 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.195 1.195 24 C -0.247 4.247 25 C -0.178 4.178 26 C -0.137 4.137 27 C -0.115 4.115 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.260 0.740 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.159 0.841 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.961 5.416 -10.694 22.433 hybrid contribution -0.206 -0.166 0.974 1.010 sum -19.168 5.250 -9.720 22.123 Atomic orbital electron populations 1.20845 0.92804 1.02525 1.02004 1.23391 0.96188 0.98195 0.99447 1.21592 0.91790 0.98379 1.02027 1.19044 0.93108 0.93177 1.02110 1.20995 0.93133 0.97417 0.99475 1.20884 0.94483 0.96561 1.04077 1.17849 0.82106 0.94289 1.00569 1.43165 1.04708 1.31650 1.50268 1.20713 0.89550 0.82055 0.78566 1.90771 1.69754 1.32784 1.43581 1.19672 0.86895 0.84566 0.81248 1.90730 1.69699 1.33437 1.47949 1.45882 1.10357 1.19287 1.55401 1.21193 0.76435 1.00313 0.98431 1.19037 0.94737 0.90154 0.94230 1.20355 1.18340 1.26586 0.88701 0.91963 1.24991 0.94832 0.94135 0.99037 1.69983 1.21513 1.33544 1.25977 0.86622 0.80473 0.78033 0.83181 1.20606 1.21154 1.19543 1.23066 1.08401 0.97867 0.95374 1.22469 0.92751 1.01720 1.00811 1.21260 0.94112 0.97945 1.00368 1.21180 0.93471 0.97597 0.99238 0.91913 0.91529 0.91558 0.86863 0.86564 0.85471 0.85284 0.73976 0.74694 0.90784 0.93250 0.92812 0.90214 0.91616 0.91705 0.89370 0.84054 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 10.18 36.01 0.37 -0.35 16 2 C -0.15 -1.19 9.68 -36.21 -0.35 -1.54 16 3 C -0.12 -1.01 9.55 -37.60 -0.36 -1.37 16 4 C -0.07 -0.76 5.87 -104.98 -0.62 -1.37 16 5 C -0.09 -0.88 9.77 -39.24 -0.38 -1.27 16 6 C -0.14 -1.47 9.95 -39.44 -0.39 -1.86 16 7 C 0.15 1.85 6.29 -83.72 -0.53 1.33 16 8 N -0.65 -8.61 5.30 -10.27 -0.05 -8.66 16 9 C 0.51 8.29 7.72 -11.64 -0.09 8.20 16 10 O -0.50 -8.95 13.96 5.47 0.08 -8.87 16 11 C 0.50 9.13 7.88 -11.64 -0.09 9.04 16 12 O -0.54 -10.60 16.48 5.48 0.09 -10.51 16 13 N -0.66 -13.01 5.40 -60.78 -0.33 -13.34 16 14 C 0.16 3.45 5.58 -4.05 -0.02 3.42 16 15 C 0.02 0.44 1.60 -155.66 -0.25 0.19 16 16 C -0.50 -12.80 8.15 -34.44 -0.28 -13.08 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 19 N -0.87 -23.81 12.65 55.43 0.70 -23.11 16 20 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.21 -4.30 9.93 -26.69 -0.27 -4.56 16 25 C -0.14 -3.10 9.17 -26.69 -0.24 -3.35 16 26 C -0.12 -1.52 8.67 -39.44 -0.34 -1.86 16 27 C -0.10 -1.08 9.39 -39.23 -0.37 -1.45 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.11 0.85 6.03 -52.49 -0.32 0.54 16 32 H 0.12 0.80 8.05 -52.49 -0.42 0.37 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.42 4.78 8.32 -40.82 -0.34 4.44 16 36 H 0.42 8.19 7.50 -40.82 -0.31 7.88 16 37 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 44 H 0.14 1.99 6.26 -52.48 -0.33 1.66 16 45 H 0.13 1.19 6.16 -52.49 -0.32 0.87 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -29.06 387.23 -9.24 -38.30 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -6.23 Total: 12.74 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -4.31 Total: -8.01 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.32 Total: -45.11 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.17 Total: -19.38 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.06 -9.24 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354965381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.583 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds