Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32623 * 119.99963 * 2 1 4 4 C 1.47748 * 120.00061 * 180.02562 * 3 2 1 5 5 C 1.39610 * 120.07062 * 179.97438 * 4 3 2 6 6 C 1.37785 * 119.93979 * 179.97438 * 5 4 3 7 7 C 1.39072 * 120.06199 * 0.02562 * 6 5 4 8 8 N 1.39576 * 119.93264 * 179.97438 * 7 6 5 9 9 C 1.34782 * 120.00173 * 144.45782 * 8 7 6 10 10 O 1.21384 * 119.99680 * 4.76824 * 9 8 7 11 11 C 1.49330 * 120.00234 * 184.76675 * 9 8 7 12 12 O 1.21365 * 120.00131 * 5.11490 * 11 9 8 13 13 N 1.34780 * 120.00367 * 185.11405 * 11 9 8 14 14 C 1.46488 * 120.00295 * 185.05519 * 13 11 9 15 15 C 1.52999 * 109.47287 * 184.72844 * 14 13 11 16 16 C 1.50699 * 115.55288 * 303.96606 * 15 14 13 17 17 H 1.07996 * 120.00229 * 95.18443 * 16 15 14 18 18 C 1.37883 * 119.99644 * 274.91896 * 16 15 14 19 19 N 1.31515 * 120.00029 * 355.50880 * 18 16 15 20 20 Si 1.86796 * 119.99859 * 175.51546 * 18 16 15 21 21 H 1.48499 * 109.47446 * 89.99572 * 20 18 16 22 22 H 1.48498 * 109.47126 * 209.99735 * 20 18 16 23 23 H 1.48502 * 109.47078 * 329.99650 * 20 18 16 24 24 C 1.53007 * 117.49594 * 89.63236 * 15 14 13 25 25 C 1.53001 * 117.49942 * 158.29047 * 15 14 13 26 26 C 1.39069 * 120.13222 * 0.23365 * 7 6 5 27 27 C 1.37787 * 120.06419 * 359.48913 * 26 7 6 28 28 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47056 * 300.00634 * 1 2 3 30 30 H 1.08994 * 109.46802 * 60.00222 * 1 2 3 31 31 H 1.07997 * 120.00141 * 179.97438 * 2 1 3 32 32 H 1.07995 * 120.00398 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.03082 * 359.95218 * 5 4 3 34 34 H 1.07993 * 119.96984 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00412 * 324.46382 * 8 7 6 36 36 H 0.97000 * 119.99188 * 5.06042 * 13 11 9 37 37 H 1.09005 * 109.46999 * 64.73327 * 14 13 11 38 38 H 1.09000 * 109.47432 * 304.73185 * 14 13 11 39 39 H 0.96999 * 120.00114 * 185.00672 * 19 18 16 40 40 H 1.09004 * 117.49596 * 215.00414 * 24 15 14 41 41 H 1.08994 * 117.49771 * 0.02648 * 24 15 14 42 42 H 1.08996 * 117.49882 * 359.97438 * 25 15 14 43 43 H 1.09002 * 117.50016 * 144.97429 * 25 15 14 44 44 H 1.08004 * 119.96689 * 179.74819 * 26 7 6 45 45 H 1.07999 * 120.03379 * 180.25775 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1701 1.1486 0.0000 4 6 3.6476 1.1486 -0.0006 5 6 4.3471 2.3568 -0.0011 6 6 5.7250 2.3537 -0.0011 7 6 6.4189 1.1484 -0.0011 8 7 7.8147 1.1484 -0.0017 9 6 8.4889 0.1988 0.6768 10 8 7.8853 -0.7057 1.2162 11 6 9.9783 0.2595 0.7650 12 8 10.5751 1.2115 0.3062 13 7 10.6600 -0.7430 1.3540 14 6 12.1089 -0.6334 1.5398 15 6 12.6494 -1.9426 2.1185 16 6 12.0133 -2.3950 3.4076 17 1 11.1971 -3.1020 3.3880 18 6 12.4771 -1.9106 4.6123 19 7 13.5301 -1.1233 4.6429 20 14 11.6099 -2.3728 6.2009 21 1 12.2125 -3.6135 6.7510 22 1 11.7598 -1.2711 7.1853 23 1 10.1679 -2.6012 5.9293 24 6 13.0878 -3.0244 1.1293 25 6 14.1371 -2.2409 1.9220 26 6 5.7249 -0.0567 -0.0060 27 6 4.3471 -0.0598 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0470 -0.9353 0.0004 32 1 1.6302 2.0839 -0.0004 33 1 3.8087 3.2931 -0.0019 34 1 6.2666 3.2880 -0.0011 35 1 8.2996 1.8319 -0.4902 36 1 10.1910 -1.5370 1.6548 37 1 12.3263 0.1845 2.2268 38 1 12.5847 -0.4371 0.5790 39 1 13.9002 -0.8412 5.4940 40 1 12.9162 -4.0633 1.4110 41 1 12.9916 -2.8032 0.0664 42 1 14.7307 -1.5047 1.3801 43 1 14.6559 -2.7640 2.7253 44 1 6.2665 -0.9911 -0.0101 45 1 3.8087 -0.9960 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354965381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -21.784396 kcal Electronic energy + Delta-G solvation = -26368.836165 eV Core-core repulsion = 22544.631230 eV Total energy + Delta-G solvation = -3824.204935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13683 -40.53690 -39.41334 -38.49367 -36.87311 -35.34717 -34.74971 -33.98836 -32.00332 -31.16714 -28.88105 -27.64598 -27.13658 -25.07236 -24.15365 -23.00225 -22.73314 -21.48694 -21.16132 -20.32760 -19.64378 -18.70490 -17.97672 -17.73224 -17.26770 -16.85925 -16.64342 -16.37071 -16.02244 -15.61707 -15.41928 -15.17515 -14.85175 -14.48980 -14.42338 -14.24728 -14.01558 -13.82072 -13.74540 -13.68702 -13.53378 -12.97982 -12.89710 -12.84816 -12.50064 -12.39709 -12.20625 -12.01630 -12.00155 -11.62948 -11.42149 -10.99921 -10.79987 -10.47653 -10.40266 -10.19706 -9.95893 -9.93775 -8.71315 -8.12632 -6.26167 -0.27518 0.36030 0.42901 1.21106 1.38905 1.43185 1.50934 1.56029 2.07635 2.39705 2.59817 2.92782 3.14888 3.32965 3.54975 3.78830 3.86605 3.99666 4.18664 4.25993 4.34035 4.41575 4.48736 4.49505 4.62757 4.63087 4.66740 4.80847 4.87719 4.90926 5.02138 5.05232 5.10045 5.20921 5.23781 5.27120 5.31050 5.39235 5.44743 5.50319 5.67851 5.73877 5.75521 5.89288 5.93696 6.02489 6.33508 6.38169 6.66514 6.81014 6.90121 7.43821 8.93835 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.002427 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.395097 B =11534.058748 C =12429.056914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.149 4.149 3 C -0.135 4.135 4 C -0.071 4.071 5 C -0.092 4.092 6 C -0.134 4.134 7 C 0.117 3.883 8 N -0.632 5.632 9 C 0.514 3.486 10 O -0.519 6.519 11 C 0.501 3.499 12 O -0.551 6.551 13 N -0.665 5.665 14 C 0.174 3.826 15 C -0.006 4.006 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.030 3.970 19 N -0.902 5.902 20 Si 0.942 3.058 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.270 1.270 24 C -0.181 4.181 25 C -0.145 4.145 26 C -0.133 4.133 27 C -0.109 4.109 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.431 0.569 36 H 0.416 0.584 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 6.023 -11.833 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.072 4.072 5 C -0.111 4.111 6 C -0.153 4.153 7 C 0.023 3.977 8 N -0.280 5.280 9 C 0.296 3.704 10 O -0.393 6.393 11 C 0.281 3.719 12 O -0.431 6.431 13 N -0.314 5.314 14 C 0.050 3.950 15 C -0.007 4.007 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.172 4.172 19 N -0.539 5.539 20 Si 0.769 3.231 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.195 1.195 24 C -0.218 4.218 25 C -0.183 4.183 26 C -0.153 4.153 27 C -0.127 4.127 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.271 0.729 36 H 0.253 0.747 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.403 6.191 -11.600 25.119 hybrid contribution 0.397 -0.394 1.177 1.303 sum -21.005 5.797 -10.424 24.155 Atomic orbital electron populations 1.20891 0.91283 1.03259 1.02765 1.23647 0.97427 0.97967 0.97631 1.21713 0.90739 0.99526 1.03297 1.19369 0.94341 0.93007 1.00487 1.21381 0.92871 0.98484 0.98323 1.21158 0.95046 0.96465 1.02679 1.18047 0.81459 0.95204 1.02960 1.42992 1.05234 1.30674 1.49057 1.20227 0.88378 0.82688 0.79138 1.90769 1.69679 1.33871 1.45029 1.19988 0.87909 0.83759 0.80251 1.90714 1.70378 1.33715 1.48307 1.45797 1.09701 1.19836 1.56083 1.20847 0.77696 0.98462 0.97960 1.19106 0.95240 0.91726 0.94631 1.20612 1.17953 1.25936 0.89901 0.92361 1.25614 0.95445 0.94471 1.01629 1.70077 1.22730 1.34816 1.26290 0.85789 0.79466 0.77670 0.80191 1.20072 1.21466 1.19494 1.23058 1.05486 0.97144 0.96152 1.22387 0.92556 1.02469 1.00925 1.21225 0.94992 0.97516 1.01596 1.21346 0.92896 0.98841 0.99653 0.91304 0.90845 0.90555 0.87230 0.84649 0.82408 0.83092 0.72932 0.74711 0.93989 0.92125 0.93066 0.89992 0.89061 0.90533 0.91645 0.85938 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 10.18 71.24 0.73 -0.40 16 2 C -0.15 -1.97 9.68 24.52 0.24 -1.73 16 3 C -0.13 -1.93 9.55 23.62 0.23 -1.71 16 4 C -0.07 -1.33 5.87 -20.10 -0.12 -1.45 16 5 C -0.09 -1.53 9.77 22.49 0.22 -1.31 16 6 C -0.13 -2.53 9.95 22.36 0.22 -2.31 16 7 C 0.12 2.88 6.29 38.31 0.24 3.12 16 8 N -0.63 -16.44 5.30 -304.75 -1.62 -18.06 16 9 C 0.51 16.83 7.72 87.23 0.67 17.51 16 10 O -0.52 -19.06 13.96 -3.35 -0.05 -19.11 16 11 C 0.50 18.44 7.88 87.23 0.69 19.13 16 12 O -0.55 -21.57 16.48 -3.29 -0.05 -21.62 16 13 N -0.66 -26.41 5.40 -464.55 -2.51 -28.92 16 14 C 0.17 7.59 5.58 86.38 0.48 8.07 16 15 C -0.01 -0.29 1.60 -52.93 -0.08 -0.38 16 16 C -0.51 -26.00 8.15 25.60 0.21 -25.79 16 17 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 18 C 0.03 1.58 5.43 84.66 0.46 2.04 16 19 N -0.90 -50.03 12.65 21.45 0.27 -49.76 16 20 Si 0.94 42.85 29.54 68.60 2.03 44.88 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C -0.18 -7.19 9.93 30.62 0.30 -6.89 16 25 C -0.15 -6.45 9.17 30.62 0.28 -6.17 16 26 C -0.13 -3.49 8.67 22.36 0.19 -3.29 16 27 C -0.11 -2.37 9.39 22.50 0.21 -2.16 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 1.50 6.03 -2.91 -0.02 1.48 16 32 H 0.14 1.40 8.05 -2.91 -0.02 1.37 16 33 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.43 9.38 8.32 -92.71 -0.77 8.61 16 36 H 0.42 16.57 7.50 -92.71 -0.70 15.88 16 37 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 39 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.12 3.61 6.26 -2.91 -0.02 3.59 16 45 H 0.14 2.54 6.16 -2.91 -0.02 2.52 16 Total: -1.00 -62.45 387.23 2.80 -59.64 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.44 Total: 36.68 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.17 Total: -3.73 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.85 Total: -96.75 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.10 Total: -40.73 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.45 2.80 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354965381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds