Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46937 * 2 1 4 4 C 1.34329 * 126.43896 * 90.00748 * 3 2 1 5 5 N 1.34481 * 107.66663 * 179.76474 * 4 3 2 6 6 C 1.30250 * 108.69892 * 0.41805 * 5 4 3 7 7 C 1.50703 * 125.61657 * 179.84067 * 6 5 4 8 8 N 1.46503 * 109.47287 * 89.69507 * 7 6 5 9 9 C 1.34777 * 120.00179 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99726 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00103 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.46976 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47286 * 55.00559 * 12 11 9 14 14 C 1.50700 * 109.47499 * 295.00307 * 12 11 9 15 15 H 1.08000 * 119.99556 * 325.12693 * 14 12 11 16 16 C 1.37871 * 120.00445 * 145.12682 * 14 12 11 17 17 N 1.31510 * 120.00331 * 184.98688 * 16 14 12 18 18 Si 1.86806 * 119.99728 * 4.99024 * 16 14 12 19 19 H 1.48496 * 109.47195 * 84.73027 * 18 16 14 20 20 H 1.48498 * 109.47077 * 204.72884 * 18 16 14 21 21 H 1.48495 * 109.47030 * 324.72888 * 18 16 14 22 22 C 1.50701 * 109.46826 * 175.00244 * 12 11 9 23 23 C 1.38232 * 120.00349 * 64.69527 * 22 12 11 24 24 C 1.38233 * 120.00718 * 179.80805 * 23 22 12 25 25 C 1.38238 * 119.99510 * 0.39596 * 24 23 22 26 26 C 1.38243 * 120.00092 * 359.85641 * 25 24 23 27 27 C 1.38234 * 120.00077 * 244.96237 * 22 12 11 28 28 O 1.33964 * 108.76550 * 359.57625 * 6 5 4 29 29 H 1.09008 * 109.46798 * 299.99998 * 1 2 3 30 30 H 1.09005 * 109.47163 * 59.99155 * 1 2 3 31 31 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46722 * 240.00396 * 2 1 3 33 33 H 1.08997 * 109.47531 * 120.00292 * 2 1 3 34 34 H 1.07998 * 126.16808 * 0.02562 * 4 3 2 35 35 H 1.09005 * 109.46983 * 209.69173 * 7 6 5 36 36 H 1.08993 * 109.47471 * 329.69549 * 7 6 5 37 37 H 0.96998 * 119.99536 * 359.97438 * 8 7 6 38 38 H 1.08995 * 109.47129 * 300.00574 * 11 9 8 39 39 H 1.09002 * 109.46696 * 60.00341 * 11 9 8 40 40 H 0.97003 * 120.00020 * 179.97438 * 17 16 14 41 41 H 1.08006 * 119.99409 * 359.97438 * 23 22 12 42 42 H 1.07994 * 120.00752 * 180.22640 * 24 23 22 43 43 H 1.07994 * 119.99841 * 179.83298 * 25 24 23 44 44 H 1.08001 * 119.99901 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99931 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2984 2.1731 1.0807 5 7 2.7277 3.3718 0.6479 6 6 2.7215 3.3723 -0.6546 7 6 3.1289 4.5264 -1.5338 8 7 4.5633 4.4404 -1.8191 9 6 5.1537 5.3729 -2.5926 10 8 4.4976 6.2836 -3.0521 11 6 6.6293 5.2848 -2.8856 12 6 7.0429 6.4565 -3.7782 13 1 6.7488 7.3941 -3.3065 14 6 6.3624 6.3326 -5.1171 15 1 6.1893 5.3570 -5.5466 16 6 5.9610 7.4648 -5.7938 17 7 5.2807 7.3549 -6.9139 18 14 6.3835 9.1549 -5.1196 19 1 7.7474 9.5385 -5.5643 20 1 5.4012 10.1484 -5.6228 21 1 6.3378 9.1215 -3.6357 22 6 8.5374 6.4382 -3.9707 23 6 9.1353 5.3874 -4.6410 24 6 10.5057 5.3725 -4.8210 25 6 11.2794 6.4044 -4.3235 26 6 10.6822 7.4527 -3.6486 27 6 9.3112 7.4694 -3.4720 28 8 2.2987 2.1758 -1.0840 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1913 1.8685 2.1113 35 1 2.5695 4.4863 -2.4685 36 1 2.9158 5.4653 -1.0228 37 1 5.0881 3.7123 -1.4512 38 1 7.1884 5.3255 -1.9508 39 1 6.8428 4.3456 -3.3960 40 1 4.9980 8.1515 -7.3898 41 1 8.5311 4.5793 -5.0264 42 1 10.9724 4.5534 -5.3479 43 1 12.3503 6.3915 -4.4618 44 1 11.2867 8.2587 -3.2595 45 1 8.8447 8.2885 -2.9449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356285566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = 5.250835 kcal Electronic energy + Delta-G solvation = -26830.379820 eV Core-core repulsion = 23007.347220 eV Total energy + Delta-G solvation = -3823.032600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.56072 -39.25860 -38.38018 -35.26457 -34.88133 -34.29006 -33.83195 -31.68195 -30.27210 -30.16162 -28.88727 -27.00033 -25.45109 -23.87740 -22.67517 -22.21403 -21.84793 -21.09535 -20.34225 -19.26381 -17.45015 -16.97716 -16.93184 -16.42713 -15.96378 -15.51177 -15.30582 -14.83252 -14.68772 -14.55032 -14.17554 -13.82919 -13.54191 -13.41482 -13.15706 -12.98388 -12.75242 -12.69852 -12.53884 -12.27573 -12.12872 -11.87541 -11.78419 -11.65161 -11.50851 -11.14362 -10.78387 -10.69242 -10.50822 -10.37847 -9.87151 -9.60342 -9.26940 -9.07054 -8.84186 -8.76970 -8.42204 -8.23345 -7.82365 -5.97317 -3.94345 1.13853 2.08092 2.13486 2.34447 2.43112 3.40269 3.43172 3.47474 3.48515 3.60978 3.88897 4.36265 4.51572 4.57458 4.58764 4.73769 4.81395 5.00328 5.22286 5.28097 5.36239 5.39798 5.50329 5.51214 5.54681 5.59597 5.67490 5.73360 5.76845 5.84371 5.93393 6.00910 6.06191 6.07530 6.23248 6.32344 6.58684 6.64899 6.68553 6.82313 7.03315 7.13198 7.25275 7.52332 7.58023 7.72261 7.82584 7.89403 8.53711 8.90557 9.01567 9.67171 11.15818 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002764 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.807545 B =10126.578761 C =11071.537541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.041 4.041 4 C -0.044 4.044 5 N -0.465 5.465 6 C 0.179 3.821 7 C 0.221 3.779 8 N -0.745 5.745 9 C 0.519 3.481 10 O -0.493 6.493 11 C -0.113 4.113 12 C 0.046 3.954 13 H 0.059 0.941 14 C -0.487 4.487 15 H 0.071 0.929 16 C 0.087 3.913 17 N -0.898 5.898 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.260 1.260 22 C -0.040 4.040 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.140 4.140 28 O -0.193 6.193 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.183 0.817 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -13.536 14.800 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.095 4.095 4 C -0.183 4.183 5 N -0.195 5.195 6 C -0.027 4.027 7 C 0.097 3.903 8 N -0.403 5.403 9 C 0.306 3.694 10 O -0.364 6.364 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.077 0.923 14 C -0.524 4.524 15 H 0.089 0.911 16 C -0.115 4.115 17 N -0.535 5.535 18 Si 0.698 3.302 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.186 1.186 22 C -0.041 4.041 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.168 4.168 26 C -0.142 4.142 27 C -0.158 4.158 28 O -0.079 6.079 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.200 0.800 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.230 0.770 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.449 -12.197 14.572 19.160 hybrid contribution 0.196 -0.009 0.009 0.196 sum -2.253 -12.206 14.581 19.148 Atomic orbital electron populations 1.21811 0.93599 1.02627 1.02863 1.20086 0.96548 0.86438 1.04561 1.23577 1.04995 0.96265 0.84656 1.23101 1.04884 0.89926 1.00364 1.70490 1.17442 1.22440 1.09136 1.26288 0.99891 0.86310 0.90254 1.19425 0.83977 0.90242 0.96681 1.46157 1.07741 1.31296 1.55133 1.20866 0.90755 0.81066 0.76731 1.90768 1.65135 1.32856 1.47643 1.21640 0.90575 1.02751 1.00375 1.18313 0.87252 0.95002 0.96766 0.92312 1.20593 1.36254 0.94695 1.00851 0.91053 1.24861 0.93550 0.98717 0.94411 1.69882 1.37387 1.29371 1.16905 0.86970 0.78099 0.84898 0.80192 1.20253 1.21787 1.18556 1.20786 0.97554 0.92591 0.93124 1.20977 0.93650 0.99094 0.98261 1.21064 0.94422 0.98507 1.00447 1.20867 0.98839 0.95669 1.01399 1.20967 0.94888 0.98207 1.00174 1.21086 0.93595 0.99356 1.01785 1.84446 1.63513 1.23414 1.36488 0.92054 0.92120 0.91289 0.89661 0.88426 0.79956 0.88633 0.87505 0.76966 0.91116 0.89668 0.92831 0.86183 0.87162 0.87398 0.87319 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.04 -0.24 6.49 -27.88 -0.18 -0.42 16 3 C -0.04 -0.42 6.64 -35.69 -0.24 -0.65 16 4 C -0.04 -0.46 11.80 -17.77 -0.21 -0.67 16 5 N -0.47 -6.27 11.29 -11.10 -0.13 -6.39 16 6 C 0.18 2.39 7.71 -12.95 -0.10 2.29 16 7 C 0.22 3.12 6.30 -5.19 -0.03 3.09 16 8 N -0.75 -11.15 5.55 -61.47 -0.34 -11.49 16 9 C 0.52 9.99 7.58 -10.99 -0.08 9.91 16 10 O -0.49 -11.87 14.98 5.56 0.08 -11.78 16 11 C -0.11 -2.08 4.96 -27.89 -0.14 -2.22 16 12 C 0.05 1.04 1.21 -92.93 -0.11 0.93 16 13 H 0.06 1.43 4.70 -51.93 -0.24 1.19 16 14 C -0.49 -13.25 6.87 -34.44 -0.24 -13.49 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 18 Si 0.87 22.69 27.15 -169.99 -4.62 18.07 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.26 -6.53 6.06 56.52 0.34 -6.19 16 22 C -0.04 -0.83 4.55 -104.62 -0.48 -1.30 16 23 C -0.10 -1.96 8.87 -39.59 -0.35 -2.31 16 24 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 26 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 27 C -0.14 -2.73 9.43 -39.58 -0.37 -3.10 16 28 O -0.19 -2.46 10.78 5.37 0.06 -2.40 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 4.96 8.46 -40.82 -0.35 4.61 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.12 2.27 7.80 -52.48 -0.41 1.86 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.11 2.06 7.95 -52.49 -0.42 1.65 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -34.83 382.40 -8.37 -43.20 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.52 Total: 6.07 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.45 Total: -13.85 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.31 Total: -45.07 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.14 Total: -14.18 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.62 Total: 18.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.83 -8.37 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356285566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.455 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds