Wall clock time and date at job start Tue Mar 31 2020 14:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46937 * 2 1 4 4 C 1.34329 * 126.43896 * 90.00748 * 3 2 1 5 5 N 1.34481 * 107.66663 * 179.76474 * 4 3 2 6 6 C 1.30250 * 108.69892 * 0.41805 * 5 4 3 7 7 C 1.50703 * 125.61657 * 179.84067 * 6 5 4 8 8 N 1.46503 * 109.47287 * 89.69507 * 7 6 5 9 9 C 1.34777 * 120.00179 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99726 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00103 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.46976 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47286 * 55.00559 * 12 11 9 14 14 C 1.50700 * 109.47499 * 295.00307 * 12 11 9 15 15 H 1.08000 * 119.99556 * 325.12693 * 14 12 11 16 16 C 1.37871 * 120.00445 * 145.12682 * 14 12 11 17 17 N 1.31510 * 120.00331 * 184.98688 * 16 14 12 18 18 Si 1.86806 * 119.99728 * 4.99024 * 16 14 12 19 19 H 1.48496 * 109.47195 * 84.73027 * 18 16 14 20 20 H 1.48498 * 109.47077 * 204.72884 * 18 16 14 21 21 H 1.48495 * 109.47030 * 324.72888 * 18 16 14 22 22 C 1.50701 * 109.46826 * 175.00244 * 12 11 9 23 23 C 1.38232 * 120.00349 * 64.69527 * 22 12 11 24 24 C 1.38233 * 120.00718 * 179.80805 * 23 22 12 25 25 C 1.38238 * 119.99510 * 0.39596 * 24 23 22 26 26 C 1.38243 * 120.00092 * 359.85641 * 25 24 23 27 27 C 1.38234 * 120.00077 * 244.96237 * 22 12 11 28 28 O 1.33964 * 108.76550 * 359.57625 * 6 5 4 29 29 H 1.09008 * 109.46798 * 299.99998 * 1 2 3 30 30 H 1.09005 * 109.47163 * 59.99155 * 1 2 3 31 31 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46722 * 240.00396 * 2 1 3 33 33 H 1.08997 * 109.47531 * 120.00292 * 2 1 3 34 34 H 1.07998 * 126.16808 * 0.02562 * 4 3 2 35 35 H 1.09005 * 109.46983 * 209.69173 * 7 6 5 36 36 H 1.08993 * 109.47471 * 329.69549 * 7 6 5 37 37 H 0.96998 * 119.99536 * 359.97438 * 8 7 6 38 38 H 1.08995 * 109.47129 * 300.00574 * 11 9 8 39 39 H 1.09002 * 109.46696 * 60.00341 * 11 9 8 40 40 H 0.97003 * 120.00020 * 179.97438 * 17 16 14 41 41 H 1.08006 * 119.99409 * 359.97438 * 23 22 12 42 42 H 1.07994 * 120.00752 * 180.22640 * 24 23 22 43 43 H 1.07994 * 119.99841 * 179.83298 * 25 24 23 44 44 H 1.08001 * 119.99901 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99931 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2984 2.1731 1.0807 5 7 2.7277 3.3718 0.6479 6 6 2.7215 3.3723 -0.6546 7 6 3.1289 4.5264 -1.5338 8 7 4.5633 4.4404 -1.8191 9 6 5.1537 5.3729 -2.5926 10 8 4.4976 6.2836 -3.0521 11 6 6.6293 5.2848 -2.8856 12 6 7.0429 6.4565 -3.7782 13 1 6.7488 7.3941 -3.3065 14 6 6.3624 6.3326 -5.1171 15 1 6.1893 5.3570 -5.5466 16 6 5.9610 7.4648 -5.7938 17 7 5.2807 7.3549 -6.9139 18 14 6.3835 9.1549 -5.1196 19 1 7.7474 9.5385 -5.5643 20 1 5.4012 10.1484 -5.6228 21 1 6.3378 9.1215 -3.6357 22 6 8.5374 6.4382 -3.9707 23 6 9.1353 5.3874 -4.6410 24 6 10.5057 5.3725 -4.8210 25 6 11.2794 6.4044 -4.3235 26 6 10.6822 7.4527 -3.6486 27 6 9.3112 7.4694 -3.4720 28 8 2.2987 2.1758 -1.0840 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1913 1.8685 2.1113 35 1 2.5695 4.4863 -2.4685 36 1 2.9158 5.4653 -1.0228 37 1 5.0881 3.7123 -1.4512 38 1 7.1884 5.3255 -1.9508 39 1 6.8428 4.3456 -3.3960 40 1 4.9980 8.1515 -7.3898 41 1 8.5311 4.5793 -5.0264 42 1 10.9724 4.5534 -5.3479 43 1 12.3503 6.3915 -4.4618 44 1 11.2867 8.2587 -3.2595 45 1 8.8447 8.2885 -2.9449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356285566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:43 Heat of formation + Delta-G solvation = -19.329702 kcal Electronic energy + Delta-G solvation = -26831.445712 eV Core-core repulsion = 23007.347220 eV Total energy + Delta-G solvation = -3824.098492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.48388 -40.80338 -39.81582 -36.49116 -35.85869 -35.67170 -34.94815 -33.72016 -31.61229 -31.36406 -30.16443 -28.32501 -27.01006 -24.62873 -24.23331 -23.30565 -23.11192 -21.97275 -21.80490 -20.85970 -19.02347 -18.59260 -18.08617 -17.63239 -17.19800 -16.80652 -16.51300 -16.27526 -15.93786 -15.63649 -15.41407 -15.35637 -14.82877 -14.63968 -14.44227 -14.20751 -14.10598 -14.05025 -13.80031 -13.58224 -13.45009 -13.30860 -12.87354 -12.74008 -12.62878 -12.50889 -12.13755 -12.04981 -11.87552 -11.81099 -11.57174 -11.47207 -11.00298 -10.84042 -10.56849 -10.16173 -9.79149 -9.62322 -9.30134 -8.20690 -6.17061 0.21576 0.68417 0.73480 1.31835 1.35091 1.40898 1.41967 1.53734 1.86201 2.38758 2.41065 2.89598 3.08876 3.23384 3.66477 3.95785 3.99889 4.04797 4.13463 4.28249 4.29542 4.31141 4.33551 4.37613 4.46097 4.49669 4.52197 4.65683 4.69342 4.85108 4.87385 4.87841 4.98120 5.07429 5.17481 5.19854 5.21582 5.31342 5.33127 5.38530 5.41867 5.70801 5.77143 5.83038 6.03143 6.33804 6.37229 6.56637 6.60375 6.82144 7.42045 7.46619 8.96520 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002764 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.807545 B =10126.578761 C =11071.537541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.033 4.033 4 C -0.055 4.055 5 N -0.481 5.481 6 C 0.162 3.838 7 C 0.225 3.775 8 N -0.725 5.725 9 C 0.518 3.482 10 O -0.551 6.551 11 C -0.109 4.109 12 C 0.048 3.952 13 H 0.040 0.960 14 C -0.464 4.464 15 H 0.037 0.963 16 C 0.026 3.974 17 N -0.952 5.952 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.299 1.299 21 H -0.249 1.249 22 C -0.064 4.064 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.157 4.157 28 O -0.208 6.208 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.215 0.785 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.412 0.588 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.258 0.742 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -15.147 17.267 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.193 4.193 5 N -0.211 5.211 6 C -0.044 4.044 7 C 0.101 3.899 8 N -0.382 5.382 9 C 0.306 3.694 10 O -0.426 6.426 11 C -0.149 4.149 12 C 0.029 3.971 13 H 0.058 0.942 14 C -0.502 4.502 15 H 0.055 0.945 16 C -0.171 4.171 17 N -0.594 5.594 18 Si 0.746 3.254 19 H -0.192 1.192 20 H -0.226 1.226 21 H -0.173 1.173 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.141 4.141 27 C -0.175 4.175 28 O -0.094 6.094 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.146 0.854 34 H 0.231 0.769 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.129 0.871 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.037 -13.863 17.091 22.007 hybrid contribution -0.500 0.271 -0.644 0.859 sum -0.538 -13.593 16.447 21.344 Atomic orbital electron populations 1.21812 0.93061 1.03780 1.02083 1.20359 0.96845 0.84089 1.06237 1.24422 1.03162 0.97315 0.83786 1.23645 1.04777 0.88947 1.01968 1.70455 1.17595 1.24016 1.09083 1.25837 1.01893 0.86545 0.90154 1.19280 0.83044 0.91020 0.96572 1.45885 1.08400 1.30443 1.53513 1.21056 0.91083 0.80853 0.76433 1.90750 1.66289 1.35316 1.50251 1.21582 0.90409 1.01552 1.01402 1.18166 0.88726 0.95741 0.94510 0.94214 1.20819 1.34600 0.92672 1.02082 0.94501 1.25573 0.94360 1.02233 0.94917 1.70026 1.40517 1.29836 1.18992 0.86172 0.77913 0.81078 0.80239 1.19185 1.22619 1.17314 1.20516 0.96144 0.94326 0.95502 1.21031 0.95092 0.98779 0.98804 1.21409 0.93329 0.99646 0.99840 1.21345 1.00752 0.94379 0.99356 1.21344 0.94005 0.99305 0.99493 1.21223 0.94985 0.98892 1.02398 1.84443 1.63644 1.23482 1.37815 0.91813 0.93948 0.89183 0.89303 0.85382 0.76875 0.89556 0.87758 0.75229 0.87527 0.88389 0.93302 0.87060 0.84258 0.83580 0.84206 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 71.98 0.71 -0.66 16 2 C -0.04 -0.38 6.49 29.85 0.19 -0.18 16 3 C -0.03 -0.62 6.64 24.79 0.16 -0.46 16 4 C -0.05 -1.05 11.80 83.39 0.98 -0.07 16 5 N -0.48 -12.57 11.29 -303.84 -3.43 -16.00 16 6 C 0.16 4.31 7.71 88.34 0.68 4.99 16 7 C 0.23 6.59 6.30 85.63 0.54 7.13 16 8 N -0.73 -21.89 5.55 -466.78 -2.59 -24.48 16 9 C 0.52 20.38 7.58 87.66 0.66 21.04 16 10 O -0.55 -27.68 14.98 -3.03 -0.05 -27.72 16 11 C -0.11 -4.00 4.96 29.85 0.15 -3.86 16 12 C 0.05 2.19 1.21 -12.29 -0.01 2.18 16 13 H 0.04 1.97 4.70 -2.39 -0.01 1.96 16 14 C -0.46 -26.28 6.87 25.60 0.18 -26.10 16 15 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 16 C 0.03 1.56 5.47 84.65 0.46 2.02 16 17 N -0.95 -62.43 13.96 21.44 0.30 -62.13 16 18 Si 0.92 48.22 27.15 68.60 1.86 50.08 16 19 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 21 H -0.25 -12.41 6.06 99.48 0.60 -11.81 16 22 C -0.06 -2.62 4.55 -19.87 -0.09 -2.71 16 23 C -0.12 -4.44 8.87 22.27 0.20 -4.24 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 25 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 26 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 27 C -0.16 -5.80 9.43 22.27 0.21 -5.59 16 28 O -0.21 -5.24 10.78 -3.69 -0.04 -5.28 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.41 9.99 8.46 -92.71 -0.78 9.21 16 38 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.10 3.32 7.86 -2.39 -0.02 3.30 16 40 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 41 H 0.11 4.23 7.80 -2.91 -0.02 4.21 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.11 3.94 7.95 -2.91 -0.02 3.92 16 Total: -1.00 -80.22 382.40 1.87 -78.35 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.11 Total: 24.47 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.70 Total: -17.30 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -5.72 Total: -102.61 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.09 Total: -33.00 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.86 Total: 50.08 kcal Total: -80.22 1.87 -78.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356285566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.023 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds