Wall clock time and date at job start Tue Mar 31 2020 14:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47417 * 2 1 4 4 C 1.34329 * 126.44415 * 89.99762 * 3 2 1 5 5 N 1.34480 * 107.66502 * 179.76484 * 4 3 2 6 6 C 1.30252 * 108.70546 * 0.42608 * 5 4 3 7 7 C 1.50697 * 125.62298 * 179.83860 * 6 5 4 8 8 N 1.46502 * 109.47038 * 89.68696 * 7 6 5 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 O 1.33972 * 108.75545 * 359.56874 * 6 5 4 29 29 H 1.08991 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47033 * 300.00265 * 1 2 3 31 31 H 1.08999 * 109.46873 * 60.00094 * 1 2 3 32 32 H 1.09000 * 109.47461 * 239.99413 * 2 1 3 33 33 H 1.09008 * 109.47145 * 119.99941 * 2 1 3 34 34 H 1.07998 * 126.16587 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.46916 * 329.69182 * 7 6 5 36 36 H 1.08995 * 109.46698 * 209.68916 * 7 6 5 37 37 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 38 38 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 39 39 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 40 40 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 41 41 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 43 43 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 44 44 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1731 1.0806 5 7 2.7278 3.3717 0.6477 6 6 2.7217 3.3722 -0.6548 7 6 3.1292 4.5262 -1.5341 8 7 4.5636 4.4400 -1.8192 9 6 5.1540 5.3725 -2.5928 10 8 4.4979 6.2830 -3.0525 11 6 6.6294 5.2836 -2.8866 12 6 7.0432 6.4553 -3.7792 13 1 6.4103 6.4774 -4.6663 14 6 6.8866 7.7465 -3.0180 15 1 6.9587 7.7501 -1.9404 16 6 6.6513 8.9230 -3.6972 17 7 6.6946 8.9435 -5.0114 18 14 6.2784 10.4896 -2.7504 19 1 6.0716 11.6077 -3.7054 20 1 5.0492 10.2972 -1.9397 21 1 7.4181 10.8090 -1.8535 22 6 8.4826 6.2877 -4.1932 23 6 9.4861 6.3470 -3.2443 24 6 10.8060 6.1888 -3.6234 25 6 11.1231 5.9804 -4.9527 26 6 10.1200 5.9262 -5.9023 27 6 8.7997 6.0801 -5.5225 28 8 2.2989 2.1755 -1.0840 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.1911 1.8687 2.1112 35 1 2.9161 5.4651 -1.0232 36 1 2.5699 4.4859 -2.4687 37 1 5.0883 3.7115 -1.4518 38 1 6.8423 4.3445 -3.3973 39 1 7.1891 5.3239 -1.9521 40 1 6.9672 8.1512 -5.5002 41 1 9.2386 6.5139 -2.2063 42 1 11.5896 6.2308 -2.8814 43 1 12.1545 5.8594 -5.2492 44 1 10.3677 5.7630 -6.9407 45 1 8.0160 6.0376 -6.2644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356285571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:46 Heat of formation + Delta-G solvation = -24.893906 kcal Electronic energy + Delta-G solvation = -26789.835385 eV Core-core repulsion = 22965.495611 eV Total energy + Delta-G solvation = -3824.339774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.50472 -40.84383 -39.83700 -36.57335 -35.97990 -35.76447 -34.97390 -33.31185 -31.60871 -31.36571 -30.16452 -27.98975 -26.58845 -24.75006 -24.44800 -23.24675 -23.11843 -21.99423 -21.89751 -21.21501 -18.98408 -18.41835 -18.11020 -17.64224 -17.21774 -16.87068 -16.52880 -16.04746 -15.76737 -15.64001 -15.59419 -15.41256 -14.83321 -14.67901 -14.37748 -14.20533 -14.05703 -13.99028 -13.84038 -13.49351 -13.44975 -13.14831 -12.67406 -12.62989 -12.61242 -12.52977 -12.14677 -12.07123 -11.94623 -11.71884 -11.57949 -11.50380 -10.91588 -10.59766 -10.39265 -10.21067 -9.81266 -9.63541 -9.26731 -8.43029 -6.10252 0.19081 0.68411 0.74057 1.38489 1.49968 1.51047 1.59896 1.75757 1.79735 2.33896 2.63486 2.87357 3.11263 3.37237 3.64556 3.92934 3.96462 4.03263 4.13920 4.26819 4.27471 4.29109 4.30991 4.35556 4.44468 4.48688 4.49232 4.62940 4.66876 4.83151 4.86109 4.86956 4.97290 5.07325 5.15772 5.17616 5.23258 5.28279 5.30612 5.40765 5.44221 5.75259 5.82563 5.95747 6.24598 6.31829 6.41214 6.51147 6.58667 6.79577 7.36446 7.64807 8.97273 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002781 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.053770 B =10066.027862 C =11434.507632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 C -0.031 4.031 4 C -0.056 4.056 5 N -0.484 5.484 6 C 0.162 3.838 7 C 0.226 3.774 8 N -0.725 5.725 9 C 0.520 3.480 10 O -0.550 6.550 11 C -0.109 4.109 12 C 0.075 3.925 13 H 0.008 0.992 14 C -0.559 4.559 15 H 0.040 0.960 16 C -0.024 4.024 17 N -0.943 5.943 18 Si 1.096 2.904 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.057 4.057 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.152 4.152 28 O -0.205 6.205 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.261 0.739 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -21.118 10.125 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.085 4.085 4 C -0.195 4.195 5 N -0.215 5.215 6 C -0.044 4.044 7 C 0.101 3.899 8 N -0.382 5.382 9 C 0.308 3.692 10 O -0.426 6.426 11 C -0.149 4.149 12 C 0.056 3.944 13 H 0.026 0.974 14 C -0.597 4.597 15 H 0.058 0.942 16 C -0.222 4.222 17 N -0.581 5.581 18 Si 0.921 3.079 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.170 4.170 28 O -0.091 6.091 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.800 -18.343 9.906 21.392 hybrid contribution 0.033 -1.937 -0.277 1.957 sum -4.767 -20.280 9.629 22.950 Atomic orbital electron populations 1.21810 0.93013 1.03805 1.02106 1.20363 0.96863 0.83955 1.06287 1.24421 1.03018 0.97289 0.83729 1.23645 1.04876 0.88953 1.02047 1.70465 1.17531 1.24147 1.09335 1.25804 1.01946 0.86575 0.90109 1.19283 0.82892 0.90851 0.96835 1.45898 1.08516 1.30173 1.53594 1.20982 0.90794 0.80368 0.77087 1.90755 1.66141 1.34021 1.51657 1.21577 0.90777 1.00295 1.02276 1.17692 0.88674 0.93371 0.94702 0.97394 1.21810 1.51241 0.93488 0.93189 0.94209 1.26701 0.94049 1.04781 0.96702 1.70816 1.46811 1.32679 1.07783 0.83215 0.77086 0.73207 0.74429 1.21470 1.21099 1.19349 1.20630 0.97592 0.94088 0.93471 1.21014 0.92896 1.00699 0.99415 1.21405 0.95949 0.99931 0.97067 1.21308 0.99793 1.02133 0.92944 1.21303 0.92295 1.00372 1.00339 1.21137 0.97093 1.03048 0.95717 1.84427 1.63672 1.23330 1.37685 0.89151 0.91944 0.93790 0.89091 0.85507 0.77029 0.88402 0.88725 0.75278 0.88612 0.88420 0.92838 0.86863 0.84043 0.83593 0.84673 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 71.98 0.71 -0.51 16 2 C -0.04 -0.34 6.49 29.85 0.19 -0.14 16 3 C -0.03 -0.56 6.64 24.79 0.16 -0.39 16 4 C -0.06 -1.10 11.80 83.39 0.98 -0.11 16 5 N -0.48 -12.96 11.29 -303.83 -3.43 -16.39 16 6 C 0.16 4.26 7.71 88.34 0.68 4.94 16 7 C 0.23 6.53 6.30 85.63 0.54 7.07 16 8 N -0.72 -22.06 5.55 -466.79 -2.59 -24.65 16 9 C 0.52 20.94 7.58 87.66 0.66 21.61 16 10 O -0.55 -28.21 15.02 -3.04 -0.05 -28.26 16 11 C -0.11 -4.24 4.95 29.85 0.15 -4.09 16 12 C 0.07 3.69 1.23 -12.28 -0.02 3.67 16 13 H 0.01 0.45 6.59 -2.39 -0.02 0.43 16 14 C -0.56 -31.31 6.35 25.60 0.16 -31.14 16 15 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 16 C -0.02 -1.41 5.45 84.65 0.46 -0.95 16 17 N -0.94 -60.16 13.56 21.44 0.29 -59.87 16 18 Si 1.10 54.36 29.91 68.60 2.05 56.41 16 19 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C -0.06 -2.56 4.53 -19.87 -0.09 -2.65 16 23 C -0.12 -4.86 8.90 22.27 0.20 -4.67 16 24 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 25 C -0.14 -4.46 10.05 22.27 0.22 -4.23 16 26 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 27 C -0.15 -6.39 9.18 22.27 0.20 -6.19 16 28 O -0.21 -4.91 10.78 -3.74 -0.04 -4.95 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.41 10.18 8.46 -92.71 -0.78 9.39 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.10 3.46 7.96 -2.39 -0.02 3.45 16 40 H 0.26 16.61 6.24 -92.70 -0.58 16.03 16 41 H 0.11 4.45 7.85 -2.91 -0.02 4.42 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 44 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.10 4.22 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -79.29 384.81 2.32 -76.97 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.40 Total: 26.55 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.68 Total: -25.81 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -5.73 Total: -100.91 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.09 Total: -33.21 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 2.05 Total: 56.41 kcal Total: -79.29 2.32 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356285571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds