Wall clock time and date at job start Tue Mar 31 2020 14:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47306 * 2 1 4 4 O 1.34270 * 126.82644 * 269.97539 * 3 2 1 5 5 N 1.20899 * 111.63897 * 180.02562 * 4 3 2 6 6 C 1.30169 * 111.74874 * 359.70103 * 5 4 3 7 7 C 1.50699 * 126.80970 * 180.30556 * 6 5 4 8 8 C 1.35894 * 126.82002 * 90.00418 * 3 2 1 9 9 N 1.40697 * 128.06033 * 359.97438 * 8 3 2 10 10 C 1.34771 * 120.00029 * 141.52301 * 9 8 3 11 11 O 1.21305 * 120.00267 * 3.29630 * 10 9 8 12 12 C 1.50700 * 119.99914 * 183.29793 * 10 9 8 13 13 C 1.52997 * 109.47042 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.47406 * 53.82164 * 13 12 10 15 15 C 1.50705 * 109.47507 * 293.82191 * 13 12 10 16 16 H 1.08000 * 119.99326 * 324.53165 * 15 13 12 17 17 C 1.37879 * 120.00310 * 144.53159 * 15 13 12 18 18 N 1.31507 * 119.99766 * 179.79099 * 17 15 13 19 19 Si 1.86798 * 119.99842 * 0.06577 * 17 15 13 20 20 H 1.48507 * 109.47179 * 265.88879 * 19 17 15 21 21 H 1.48499 * 109.47405 * 25.88790 * 19 17 15 22 22 H 1.48503 * 109.47133 * 145.89253 * 19 17 15 23 23 C 1.50698 * 109.47219 * 173.82274 * 13 12 10 24 24 C 1.38227 * 120.00265 * 69.64943 * 23 13 12 25 25 C 1.38237 * 120.00268 * 179.79245 * 24 23 13 26 26 C 1.38237 * 119.99990 * 0.43417 * 25 24 23 27 27 C 1.38238 * 119.99795 * 359.82326 * 26 25 24 28 28 C 1.38233 * 120.00056 * 359.96677 * 27 26 25 29 29 H 1.09008 * 109.46964 * 299.99732 * 1 2 3 30 30 H 1.09001 * 109.47454 * 59.99069 * 1 2 3 31 31 H 1.09005 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46964 * 240.00268 * 2 1 3 33 33 H 1.09001 * 109.47454 * 120.00931 * 2 1 3 34 34 H 1.08993 * 109.47460 * 278.40517 * 7 6 5 35 35 H 1.09003 * 109.46558 * 38.40784 * 7 6 5 36 36 H 1.09005 * 109.46595 * 158.40208 * 7 6 5 37 37 H 0.96998 * 119.99875 * 321.52022 * 9 8 3 38 38 H 1.08997 * 109.47074 * 60.00214 * 12 10 9 39 39 H 1.08998 * 109.46956 * 299.99598 * 12 10 9 40 40 H 0.96997 * 119.99866 * 180.27321 * 18 17 15 41 41 H 1.08003 * 119.99888 * 0.02562 * 24 23 13 42 42 H 1.08001 * 120.00187 * 180.27239 * 25 24 23 43 43 H 1.07998 * 120.00143 * 179.83420 * 26 25 24 44 44 H 1.07998 * 120.00112 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00136 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.3010 2.1794 -1.0748 5 7 2.6903 3.2793 -0.7580 6 6 2.7338 3.4216 0.5351 7 6 3.1601 4.6517 1.2942 8 6 2.3039 2.1885 1.0879 9 7 2.1812 1.8427 2.4461 10 6 3.1013 2.2662 3.3351 11 8 4.0019 2.9948 2.9754 12 6 3.0112 1.8346 4.7762 13 6 4.1680 2.4500 5.5661 14 1 4.1749 3.5300 5.4185 15 6 5.4718 1.8688 5.0828 16 1 5.5206 0.8349 4.7743 17 6 6.6022 2.6568 5.0345 18 7 7.7407 2.1484 4.6166 19 14 6.5180 4.4444 5.5698 20 1 6.2752 5.3053 4.3843 21 1 5.4099 4.6182 6.5430 22 1 7.8022 4.8312 6.2075 23 6 3.9944 2.1444 7.0315 24 6 4.1542 0.8507 7.4914 25 6 3.9992 0.5711 8.8363 26 6 3.6755 1.5837 9.7199 27 6 3.5104 2.8765 9.2592 28 6 3.6697 3.1569 7.9150 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 4.2480 4.6841 1.3522 35 1 2.7971 5.5408 0.7786 36 1 2.7434 4.6199 2.3009 37 1 1.4343 1.2994 2.7427 38 1 3.0698 0.7478 4.8343 39 1 2.0638 2.1706 5.1976 40 1 8.5368 2.7016 4.5864 41 1 4.4040 0.0590 6.8006 42 1 4.1284 -0.4389 9.1963 43 1 3.5517 1.3648 10.7702 44 1 3.2571 3.6676 9.9495 45 1 3.5412 4.1670 7.5551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356562564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:42 Heat of formation + Delta-G solvation = 40.922715 kcal Electronic energy + Delta-G solvation = -28138.549995 eV Core-core repulsion = 24317.064244 eV Total energy + Delta-G solvation = -3821.485751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.72357 -39.55556 -38.51107 -35.70359 -34.52554 -34.02902 -33.04248 -31.70752 -30.25511 -29.87239 -28.87487 -28.29480 -26.11533 -24.04944 -23.19159 -22.27611 -21.84746 -20.56368 -20.04230 -19.14271 -17.51765 -17.42242 -16.99296 -16.69645 -16.05529 -15.72293 -15.01263 -14.70547 -14.48148 -14.21748 -14.01187 -13.79122 -13.35692 -13.04556 -12.91607 -12.82031 -12.70873 -12.53087 -12.47494 -12.38353 -11.97460 -11.90856 -11.79302 -11.53931 -11.22361 -11.00712 -10.83042 -10.56160 -10.43038 -10.33654 -9.96740 -9.66740 -9.41552 -9.28240 -9.08719 -8.49161 -8.25982 -8.25321 -7.88732 -6.03149 -4.01864 1.53737 2.04487 2.08779 2.35363 2.93610 3.26795 3.38881 3.43226 3.46142 3.57493 4.46179 4.47576 4.52491 4.53954 4.88603 4.96519 4.99801 5.18150 5.26761 5.47241 5.50189 5.51484 5.60739 5.63250 5.63887 5.69660 5.81332 5.84165 5.88909 5.92989 5.96761 6.01033 6.09021 6.19433 6.25947 6.50736 6.52856 6.62018 6.74481 6.77543 6.93691 7.09593 7.21110 7.50265 7.66010 7.68963 7.77181 8.45275 8.46685 8.71786 8.95150 9.61161 11.09687 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003994 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.766168 B = 7008.953854 C = 8105.131270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 C -0.072 4.072 4 O 0.100 5.900 5 N -0.366 5.366 6 C 0.038 3.962 7 C -0.060 4.060 8 C 0.056 3.944 9 N -0.659 5.659 10 C 0.511 3.489 11 O -0.473 6.473 12 C -0.112 4.112 13 C 0.057 3.943 14 H 0.052 0.948 15 C -0.493 4.493 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.897 5.897 19 Si 0.870 3.130 20 H -0.276 1.276 21 H -0.257 1.257 22 H -0.294 1.294 23 C -0.042 4.042 24 C -0.098 4.098 25 C -0.129 4.129 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.407 0.593 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.262 0.738 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -3.537 -1.682 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.138 4.138 4 O 0.037 5.963 5 N -0.073 5.073 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.043 4.043 9 N -0.311 5.311 10 C 0.299 3.701 11 O -0.342 6.342 12 C -0.153 4.153 13 C 0.037 3.963 14 H 0.070 0.930 15 C -0.529 4.529 16 H 0.089 0.911 17 C -0.115 4.115 18 N -0.534 5.534 19 Si 0.698 3.302 20 H -0.202 1.202 21 H -0.181 1.181 22 H -0.221 1.221 23 C -0.042 4.042 24 C -0.116 4.116 25 C -0.147 4.147 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.176 -2.143 -2.956 15.609 hybrid contribution -0.111 0.320 1.206 1.253 sum -15.287 -1.823 -1.750 15.494 Atomic orbital electron populations 1.21799 0.93858 1.02460 1.02602 1.20004 0.96134 0.86593 1.04724 1.23873 1.07774 0.96387 0.85796 1.84804 1.62061 1.17814 1.31650 1.73772 1.17896 0.99826 1.15774 1.23453 1.01891 0.97355 0.89599 1.20169 1.03282 0.90183 0.98062 1.18132 1.07027 0.92806 0.86350 1.43181 1.28962 1.55926 1.02992 1.21149 0.80654 0.80324 0.87966 1.90793 1.31161 1.33017 1.79182 1.21675 1.00764 1.02718 0.90107 1.18146 0.94172 0.97598 0.86376 0.93020 1.20578 0.90854 0.98613 1.42901 0.91109 1.24877 0.95178 0.97863 0.93620 1.69877 1.00151 1.36589 1.46788 0.86946 0.77426 0.86490 0.79318 1.20155 1.18150 1.22123 1.20729 0.92735 0.92621 0.98160 1.21003 0.98612 0.97179 0.94781 1.21074 1.01102 0.98501 0.93986 1.20880 1.03511 0.93470 0.98732 1.20967 1.01756 0.96307 0.95571 1.21135 1.01737 0.99049 0.93391 0.92403 0.92101 0.91373 0.89319 0.88828 0.89222 0.92076 0.90335 0.75733 0.89300 0.90952 0.92810 0.86063 0.87165 0.87421 0.87388 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.04 -0.32 6.50 -27.89 -0.18 -0.51 16 3 C -0.07 -0.96 6.77 -35.15 -0.24 -1.20 16 4 O 0.10 1.53 11.20 16.57 0.19 1.71 16 5 N -0.37 -6.34 12.06 33.56 0.40 -5.94 16 6 C 0.04 0.66 6.99 -81.93 -0.57 0.08 16 7 C -0.06 -1.02 8.53 36.01 0.31 -0.71 16 8 C 0.06 0.86 6.70 -83.26 -0.56 0.31 16 9 N -0.66 -9.27 5.47 -9.64 -0.05 -9.32 16 10 C 0.51 9.17 7.03 -10.99 -0.08 9.09 16 11 O -0.47 -10.63 11.05 5.54 0.06 -10.57 16 12 C -0.11 -1.88 5.01 -27.88 -0.14 -2.02 16 13 C 0.06 1.20 1.17 -92.92 -0.11 1.09 16 14 H 0.05 1.17 4.84 -51.93 -0.25 0.92 16 15 C -0.49 -12.88 6.74 -34.44 -0.23 -13.12 16 16 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 17 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 19 Si 0.87 22.01 27.11 -169.99 -4.61 17.40 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.26 -5.98 5.08 56.52 0.29 -5.69 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 C -0.04 -0.82 4.71 -104.62 -0.49 -1.32 16 24 C -0.10 -1.81 9.01 -39.59 -0.36 -2.17 16 25 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 26 C -0.15 -2.29 10.05 -39.58 -0.40 -2.69 16 27 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 28 C -0.13 -2.49 8.85 -39.58 -0.35 -2.84 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.73 7.67 -51.93 -0.40 1.33 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.34 6.64 -51.93 -0.34 0.99 16 37 H 0.41 4.07 8.83 -40.82 -0.36 3.71 16 38 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.12 2.25 7.77 -52.48 -0.41 1.84 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.11 1.98 7.38 -52.49 -0.39 1.60 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -33.65 372.41 -8.02 -41.66 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.47 Total: 5.42 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -3.92 Total: -19.23 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.13 Total: -42.01 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.25 Total: -8.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.61 Total: 17.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.65 -8.02 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356562564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.586 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds