Wall clock time and date at job start Tue Mar 31 2020 14:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47306 * 2 1 4 4 O 1.34270 * 126.82644 * 269.97539 * 3 2 1 5 5 N 1.20899 * 111.63897 * 180.02562 * 4 3 2 6 6 C 1.30169 * 111.74874 * 359.70103 * 5 4 3 7 7 C 1.50699 * 126.80970 * 180.30556 * 6 5 4 8 8 C 1.35894 * 126.82002 * 90.00418 * 3 2 1 9 9 N 1.40697 * 128.06033 * 359.97438 * 8 3 2 10 10 C 1.34771 * 120.00029 * 141.52301 * 9 8 3 11 11 O 1.21305 * 120.00267 * 3.29630 * 10 9 8 12 12 C 1.50700 * 119.99914 * 183.29793 * 10 9 8 13 13 C 1.52997 * 109.47042 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.47406 * 53.82164 * 13 12 10 15 15 C 1.50705 * 109.47507 * 293.82191 * 13 12 10 16 16 H 1.08000 * 119.99326 * 324.53165 * 15 13 12 17 17 C 1.37879 * 120.00310 * 144.53159 * 15 13 12 18 18 N 1.31507 * 119.99766 * 179.79099 * 17 15 13 19 19 Si 1.86798 * 119.99842 * 0.06577 * 17 15 13 20 20 H 1.48507 * 109.47179 * 265.88879 * 19 17 15 21 21 H 1.48499 * 109.47405 * 25.88790 * 19 17 15 22 22 H 1.48503 * 109.47133 * 145.89253 * 19 17 15 23 23 C 1.50698 * 109.47219 * 173.82274 * 13 12 10 24 24 C 1.38227 * 120.00265 * 69.64943 * 23 13 12 25 25 C 1.38237 * 120.00268 * 179.79245 * 24 23 13 26 26 C 1.38237 * 119.99990 * 0.43417 * 25 24 23 27 27 C 1.38238 * 119.99795 * 359.82326 * 26 25 24 28 28 C 1.38233 * 120.00056 * 359.96677 * 27 26 25 29 29 H 1.09008 * 109.46964 * 299.99732 * 1 2 3 30 30 H 1.09001 * 109.47454 * 59.99069 * 1 2 3 31 31 H 1.09005 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46964 * 240.00268 * 2 1 3 33 33 H 1.09001 * 109.47454 * 120.00931 * 2 1 3 34 34 H 1.08993 * 109.47460 * 278.40517 * 7 6 5 35 35 H 1.09003 * 109.46558 * 38.40784 * 7 6 5 36 36 H 1.09005 * 109.46595 * 158.40208 * 7 6 5 37 37 H 0.96998 * 119.99875 * 321.52022 * 9 8 3 38 38 H 1.08997 * 109.47074 * 60.00214 * 12 10 9 39 39 H 1.08998 * 109.46956 * 299.99598 * 12 10 9 40 40 H 0.96997 * 119.99866 * 180.27321 * 18 17 15 41 41 H 1.08003 * 119.99888 * 0.02562 * 24 23 13 42 42 H 1.08001 * 120.00187 * 180.27239 * 25 24 23 43 43 H 1.07998 * 120.00143 * 179.83420 * 26 25 24 44 44 H 1.07998 * 120.00112 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00136 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.3010 2.1794 -1.0748 5 7 2.6903 3.2793 -0.7580 6 6 2.7338 3.4216 0.5351 7 6 3.1601 4.6517 1.2942 8 6 2.3039 2.1885 1.0879 9 7 2.1812 1.8427 2.4461 10 6 3.1013 2.2662 3.3351 11 8 4.0019 2.9948 2.9754 12 6 3.0112 1.8346 4.7762 13 6 4.1680 2.4500 5.5661 14 1 4.1749 3.5300 5.4185 15 6 5.4718 1.8688 5.0828 16 1 5.5206 0.8349 4.7743 17 6 6.6022 2.6568 5.0345 18 7 7.7407 2.1484 4.6166 19 14 6.5180 4.4444 5.5698 20 1 6.2752 5.3053 4.3843 21 1 5.4099 4.6182 6.5430 22 1 7.8022 4.8312 6.2075 23 6 3.9944 2.1444 7.0315 24 6 4.1542 0.8507 7.4914 25 6 3.9992 0.5711 8.8363 26 6 3.6755 1.5837 9.7199 27 6 3.5104 2.8765 9.2592 28 6 3.6697 3.1569 7.9150 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 4.2480 4.6841 1.3522 35 1 2.7971 5.5408 0.7786 36 1 2.7434 4.6199 2.3009 37 1 1.4343 1.2994 2.7427 38 1 3.0698 0.7478 4.8343 39 1 2.0638 2.1706 5.1976 40 1 8.5368 2.7016 4.5864 41 1 4.4040 0.0590 6.8006 42 1 4.1284 -0.4389 9.1963 43 1 3.5517 1.3648 10.7702 44 1 3.2571 3.6676 9.9495 45 1 3.5412 4.1670 7.5551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356562564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:41 Heat of formation + Delta-G solvation = 20.259679 kcal Electronic energy + Delta-G solvation = -28139.446011 eV Core-core repulsion = 24317.064244 eV Total energy + Delta-G solvation = -3822.381767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.98669 -40.97560 -39.86623 -36.96830 -35.83257 -35.42443 -34.26788 -33.64153 -31.56994 -31.00620 -30.16892 -29.62926 -27.88323 -24.99522 -24.60816 -23.62828 -23.19541 -21.83118 -21.35710 -20.58681 -19.00457 -18.79705 -18.64157 -18.07037 -17.30804 -16.92566 -16.50543 -16.21557 -15.76169 -15.48238 -15.34598 -15.06147 -14.71742 -14.51857 -14.27219 -14.22029 -14.06752 -13.87330 -13.86261 -13.51146 -13.35096 -13.28200 -12.93097 -12.75306 -12.67990 -12.37153 -12.02765 -11.91891 -11.87279 -11.79308 -11.61601 -11.47872 -11.02321 -10.73527 -10.68827 -10.55512 -9.58667 -9.47320 -9.28396 -8.21287 -6.18333 0.37907 0.71183 0.75480 1.03077 1.32678 1.37273 1.41735 1.75110 1.94255 2.41425 2.42262 3.10827 3.23989 3.28252 3.39700 3.80487 4.04227 4.16358 4.21930 4.30592 4.32659 4.36096 4.37000 4.47624 4.51362 4.51873 4.57110 4.67304 4.68771 4.87131 4.89446 4.90276 5.07160 5.09411 5.13031 5.15480 5.21710 5.39889 5.40305 5.44016 5.51708 5.69420 5.80077 5.85496 6.05178 6.34677 6.38996 6.53054 6.82652 7.23416 7.39227 7.46880 8.95597 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003994 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.766168 B = 7008.953854 C = 8105.131270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.046 4.046 4 O 0.101 5.899 5 N -0.387 5.387 6 C 0.013 3.987 7 C -0.051 4.051 8 C 0.028 3.972 9 N -0.635 5.635 10 C 0.509 3.491 11 O -0.527 6.527 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.037 0.963 15 C -0.462 4.462 16 H 0.036 0.964 17 C 0.025 3.975 18 N -0.955 5.955 19 Si 0.917 3.083 20 H -0.289 1.289 21 H -0.224 1.224 22 H -0.302 1.302 23 C -0.063 4.063 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.429 0.571 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.779 -4.689 0.429 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.113 4.113 4 O 0.038 5.962 5 N -0.095 5.095 6 C -0.147 4.147 7 C -0.108 4.108 8 C -0.071 4.071 9 N -0.289 5.289 10 C 0.298 3.702 11 O -0.400 6.400 12 C -0.146 4.146 13 C 0.037 3.963 14 H 0.055 0.945 15 C -0.500 4.500 16 H 0.055 0.945 17 C -0.171 4.171 18 N -0.596 5.596 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.147 1.147 22 H -0.230 1.230 23 C -0.064 4.064 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.144 4.144 28 C -0.168 4.168 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.269 0.731 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.650 -3.317 -0.826 18.960 hybrid contribution 0.801 0.517 0.548 1.100 sum -17.849 -2.800 -0.278 18.069 Atomic orbital electron populations 1.21791 0.91771 1.04058 1.02610 1.20330 0.97732 0.83503 1.06022 1.24693 1.04833 0.97403 0.84387 1.84774 1.61546 1.17500 1.32331 1.73749 1.18940 1.00911 1.15879 1.23655 1.02702 0.98317 0.90035 1.20011 1.01130 0.91366 0.98297 1.18256 1.08818 0.92785 0.87233 1.42785 1.28737 1.55239 1.02100 1.21401 0.80363 0.79607 0.88829 1.90798 1.33585 1.35615 1.80043 1.21586 1.00824 1.03238 0.88902 1.18034 0.93194 0.96555 0.88484 0.94528 1.20825 0.92655 0.96693 1.39855 0.94543 1.25586 0.95235 1.01403 0.94918 1.70027 1.00976 1.37838 1.50791 0.86189 0.77878 0.82396 0.79093 1.21615 1.14673 1.22978 1.20459 0.95341 0.93766 0.96811 1.21024 0.99736 0.96508 0.96071 1.21393 0.99884 1.00286 0.92974 1.21330 1.01323 0.92755 1.00381 1.21330 1.00420 0.97669 0.94967 1.21255 1.02419 0.98671 0.94447 0.92147 0.92428 0.88968 0.87739 0.87806 0.92386 0.90280 0.90620 0.73125 0.87898 0.86846 0.93531 0.87236 0.84559 0.83832 0.84357 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 71.98 0.71 -0.79 16 2 C -0.04 -0.57 6.50 29.84 0.19 -0.37 16 3 C -0.05 -1.17 6.77 25.14 0.17 -1.00 16 4 O 0.10 3.05 11.20 69.47 0.78 3.83 16 5 N -0.39 -13.63 12.06 -48.95 -0.59 -14.22 16 6 C 0.01 0.45 6.99 43.69 0.31 0.75 16 7 C -0.05 -1.81 8.53 71.24 0.61 -1.20 16 8 C 0.03 0.85 6.70 38.05 0.25 1.11 16 9 N -0.64 -17.10 5.47 -302.78 -1.66 -18.76 16 10 C 0.51 18.16 7.03 87.66 0.62 18.77 16 11 O -0.53 -24.56 11.05 -3.11 -0.03 -24.59 16 12 C -0.11 -3.40 5.01 29.85 0.15 -3.25 16 13 C 0.06 2.40 1.17 -12.29 -0.01 2.38 16 14 H 0.04 1.66 4.84 -2.38 -0.01 1.65 16 15 C -0.46 -24.99 6.74 25.60 0.17 -24.81 16 16 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 17 C 0.02 1.47 5.47 84.66 0.46 1.93 16 18 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 19 Si 0.92 46.99 27.11 68.60 1.86 48.85 16 20 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 21 H -0.22 -10.10 5.08 99.48 0.51 -9.60 16 22 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 23 C -0.06 -2.40 4.71 -19.87 -0.09 -2.49 16 24 C -0.12 -4.09 9.01 22.27 0.20 -3.89 16 25 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 26 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 27 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 28 C -0.15 -5.13 8.85 22.27 0.20 -4.93 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 2.42 7.67 -2.39 -0.02 2.40 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.68 6.64 -2.38 -0.02 2.67 16 37 H 0.43 7.45 8.83 -92.71 -0.82 6.63 16 38 H 0.10 3.04 8.11 -2.39 -0.02 3.02 16 39 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.11 4.05 7.77 -2.91 -0.02 4.02 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.11 3.72 7.38 -2.91 -0.02 3.70 16 Total: -1.00 -78.97 372.41 5.25 -73.72 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -0.01 Total: 20.84 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 4.61 Total: -28.11 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -1.95 Total: -94.54 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.74 Total: -20.76 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.86 Total: 48.85 kcal Total: -78.97 5.25 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356562564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.976 kcal (2) G-P(sol) polarization free energy of solvation -78.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds