Wall clock time and date at job start Tue Mar 31 2020 16:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47297 * 240.00206 * 2 1 3 5 5 C 1.50702 * 109.47084 * 120.00109 * 2 1 3 6 6 O 1.21271 * 120.00209 * 359.97438 * 5 2 1 7 7 N 1.34777 * 119.99847 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99900 * 180.02562 * 7 5 2 9 9 H 1.08993 * 109.52393 * 325.07837 * 8 7 5 10 10 C 1.53045 * 109.49654 * 204.99674 * 8 7 5 11 11 C 1.53039 * 109.53694 * 178.68265 * 10 8 7 12 12 C 1.53196 * 109.33748 * 61.35198 * 11 10 8 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99898 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00017 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46970 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47053 * 119.99392 * 22 20 18 25 25 H 1.48501 * 109.47001 * 239.99477 * 22 20 18 26 26 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 27 27 H 1.09002 * 109.47096 * 299.99868 * 1 2 3 28 28 H 1.09001 * 109.46921 * 59.99818 * 1 2 3 29 29 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47336 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47577 * 300.00347 * 3 2 1 32 32 H 1.09002 * 109.47045 * 60.00100 * 3 2 1 33 33 H 1.09000 * 109.46988 * 300.00221 * 4 2 1 34 34 H 1.09004 * 109.47115 * 59.99595 * 4 2 1 35 35 H 1.08997 * 109.47269 * 179.97438 * 4 2 1 36 36 H 0.97004 * 119.99652 * 359.97438 * 7 5 2 37 37 H 1.09001 * 109.45732 * 58.66570 * 10 8 7 38 38 H 1.08995 * 109.46248 * 298.70280 * 10 8 7 39 39 H 1.09002 * 109.49756 * 181.31922 * 11 10 8 40 40 H 1.09000 * 109.49883 * 301.38665 * 11 10 8 41 41 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 42 42 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 43 43 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 44 44 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 45 45 H 0.97001 * 120.00501 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.58597 * 186.62384 * 26 13 12 47 47 H 1.09001 * 109.69741 * 66.27202 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0290 7 7 3.3574 -0.8331 1.4440 8 6 3.8458 -1.5242 2.6398 9 1 3.1728 -1.3278 3.4744 10 6 5.2485 -1.0187 2.9849 11 6 5.7463 -1.7162 4.2529 12 6 5.8240 -3.2259 4.0042 13 7 4.5145 -3.6951 3.5311 14 6 3.8867 -4.7150 4.1492 15 8 2.8058 -5.0933 3.7498 16 6 4.5279 -5.3856 5.3369 17 16 3.4480 -6.7073 5.9392 18 6 4.4141 -7.3011 7.2878 19 1 5.3675 -6.8454 7.5110 20 6 3.9505 -8.3552 8.0626 21 7 2.7888 -8.9110 7.7904 22 14 4.9752 -8.9852 9.4919 23 1 6.2304 -8.1974 9.5862 24 1 4.2051 -8.8431 10.7536 25 1 5.3048 -10.4164 9.2717 26 6 3.9021 -3.0315 2.3721 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.9878 -0.4644 0.8054 37 1 5.2156 0.0579 3.1518 38 1 5.9265 -1.2376 2.1601 39 1 6.7357 -1.3387 4.5112 40 1 5.0557 -1.5176 5.0724 41 1 6.5811 -3.4331 3.2479 42 1 6.0823 -3.7362 4.9321 43 1 5.4882 -5.8080 5.0410 44 1 4.6819 -4.6524 6.1287 45 1 2.4645 -9.6474 8.3320 46 1 2.8924 -3.4142 2.2233 47 1 4.5001 -3.2223 1.4810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357759917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:27 Heat of formation + Delta-G solvation = -90.343608 kcal Electronic energy + Delta-G solvation = -26221.523175 eV Core-core repulsion = 22529.789241 eV Total energy + Delta-G solvation = -3691.733934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69066 -39.61603 -37.38572 -35.86367 -34.73875 -32.41594 -32.31607 -30.67053 -28.71274 -27.76832 -27.39796 -25.57400 -25.10900 -24.11925 -22.34733 -21.15356 -19.65858 -18.94560 -17.70730 -17.06692 -16.74419 -16.29092 -15.88737 -15.30950 -15.10607 -14.78720 -14.71385 -14.51729 -14.23328 -13.95669 -13.80442 -13.64562 -13.26123 -13.07934 -12.84922 -12.73843 -12.61408 -12.51950 -12.19458 -12.07849 -11.92335 -11.75748 -11.32953 -11.31756 -11.28240 -11.20986 -11.05663 -10.99090 -10.81703 -10.72694 -9.85129 -9.77653 -9.48307 -9.27705 -9.05374 -8.45619 -8.18419 -6.47301 -6.19301 -3.89728 2.46459 2.71041 3.07698 3.11968 3.22917 3.28724 3.32999 3.63737 4.21779 4.25255 4.36175 4.43644 4.49739 4.59339 4.67814 4.82830 4.86907 5.00519 5.11971 5.12566 5.15676 5.22933 5.24933 5.30262 5.32673 5.44053 5.53045 5.53723 5.55304 5.56422 5.67196 5.67918 5.70060 5.79839 5.83653 5.89693 5.97275 6.01219 6.03392 6.13028 6.21066 6.66228 7.26100 7.57577 7.61933 8.05970 8.37429 8.60511 9.25776 10.88180 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.002473 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.317507 B =11319.560165 C =12104.963424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.139 4.139 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.525 6.525 7 N -0.725 5.725 8 C 0.131 3.869 9 H 0.093 0.907 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.149 4.149 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.106 3.894 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.097 0.903 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 23.033 -17.406 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.305 3.695 6 O -0.399 6.399 7 N -0.377 5.377 8 C 0.025 3.975 9 H 0.111 0.889 10 C -0.162 4.162 11 C -0.171 4.171 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.384 6.384 16 C -0.299 4.299 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.018 4.018 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.443 21.972 -17.355 28.350 hybrid contribution 2.343 0.240 1.071 2.587 sum 6.786 22.212 -16.284 28.365 Atomic orbital electron populations 1.21675 0.91802 1.03181 1.02019 1.20831 0.98262 0.96290 0.93600 1.21860 1.01007 0.93859 1.02954 1.21873 1.01039 1.00949 0.95973 1.20652 0.82156 0.79353 0.87355 1.90779 1.55114 1.47524 1.46496 1.45985 1.07209 1.59009 1.25524 1.21333 0.95904 0.91771 0.88496 0.88868 1.21787 0.95174 1.00511 0.98745 1.21898 1.02315 0.95182 0.97722 1.21759 0.84700 0.94414 1.00927 1.48031 1.20586 1.34873 1.32062 1.20373 0.85003 0.78843 0.83613 1.90714 1.20511 1.62396 1.64807 1.23548 1.04827 1.03867 0.97707 1.85470 1.25966 1.34704 1.37321 1.22894 1.07641 1.21271 1.16400 0.90906 1.25001 0.95359 0.95580 0.97719 1.70032 1.18205 1.23212 1.38789 0.86115 0.79725 0.78622 0.81015 1.19630 1.20573 1.20587 1.21813 1.00865 0.91195 0.87964 0.91873 0.92044 0.91681 0.92241 0.91330 0.92011 0.91771 0.91313 0.92218 0.76730 0.91049 0.91203 0.90038 0.90869 0.91408 0.88887 0.89263 0.89235 0.92244 0.88465 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 7.76 37.16 0.29 -0.83 16 2 C -0.09 -0.67 0.87 -155.66 -0.14 -0.81 16 3 C -0.14 -0.75 8.37 37.16 0.31 -0.44 16 4 C -0.14 -0.85 8.37 37.16 0.31 -0.54 16 5 C 0.52 5.83 6.45 -10.98 -0.07 5.76 16 6 O -0.52 -8.68 15.64 5.56 0.09 -8.59 16 7 N -0.72 -6.31 4.87 -53.69 -0.26 -6.57 16 8 C 0.13 1.40 2.61 -67.81 -0.18 1.22 16 9 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 10 C -0.12 -0.91 5.36 -26.69 -0.14 -1.05 16 11 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 12 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 13 N -0.62 -9.16 2.97 -172.76 -0.51 -9.67 16 14 C 0.53 10.72 7.72 -10.98 -0.08 10.63 16 15 O -0.51 -12.51 15.27 5.56 0.08 -12.43 16 16 C -0.15 -3.10 4.50 36.01 0.16 -2.94 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.11 1.42 6.01 -3.71 -0.02 1.40 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.24 7.56 -51.93 -0.39 -0.16 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.40 2.15 7.44 -40.82 -0.30 1.85 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 43 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 44 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -37.56 389.44 -8.79 -46.35 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.00 Total: -0.96 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 0.45 Total: -0.84 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.04 Total: -42.05 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.02 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.56 -8.79 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357759917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.998 kcal (2) G-P(sol) polarization free energy of solvation -37.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds