Wall clock time and date at job start Tue Mar 31 2020 16:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.52998 * 109.47297 * 240.00206 * 2 1 3 5 5 C 1.50702 * 109.47084 * 120.00109 * 2 1 3 6 6 O 1.21271 * 120.00209 * 359.97438 * 5 2 1 7 7 N 1.34777 * 119.99847 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99900 * 180.02562 * 7 5 2 9 9 H 1.08993 * 109.52393 * 325.07837 * 8 7 5 10 10 C 1.53045 * 109.49654 * 204.99674 * 8 7 5 11 11 C 1.53039 * 109.53694 * 178.68265 * 10 8 7 12 12 C 1.53196 * 109.33748 * 61.35198 * 11 10 8 13 13 N 1.46931 * 108.77131 * 305.41286 * 12 11 10 14 14 C 1.34775 * 120.60689 * 233.57988 * 13 12 11 15 15 O 1.21283 * 120.00376 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99836 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99898 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00017 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00314 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46970 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47053 * 119.99392 * 22 20 18 25 25 H 1.48501 * 109.47001 * 239.99477 * 22 20 18 26 26 C 1.46928 * 118.76737 * 53.55408 * 13 12 11 27 27 H 1.09002 * 109.47096 * 299.99868 * 1 2 3 28 28 H 1.09001 * 109.46921 * 59.99818 * 1 2 3 29 29 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47336 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47577 * 300.00347 * 3 2 1 32 32 H 1.09002 * 109.47045 * 60.00100 * 3 2 1 33 33 H 1.09000 * 109.46988 * 300.00221 * 4 2 1 34 34 H 1.09004 * 109.47115 * 59.99595 * 4 2 1 35 35 H 1.08997 * 109.47269 * 179.97438 * 4 2 1 36 36 H 0.97004 * 119.99652 * 359.97438 * 7 5 2 37 37 H 1.09001 * 109.45732 * 58.66570 * 10 8 7 38 38 H 1.08995 * 109.46248 * 298.70280 * 10 8 7 39 39 H 1.09002 * 109.49756 * 181.31922 * 11 10 8 40 40 H 1.09000 * 109.49883 * 301.38665 * 11 10 8 41 41 H 1.08996 * 109.58760 * 65.17188 * 12 11 10 42 42 H 1.09001 * 109.58519 * 185.59185 * 12 11 10 43 43 H 1.09005 * 109.47141 * 300.00250 * 16 14 13 44 44 H 1.09005 * 109.46868 * 60.00194 * 16 14 13 45 45 H 0.97001 * 120.00501 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.58597 * 186.62384 * 26 13 12 47 47 H 1.09001 * 109.69741 * 66.27202 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0290 7 7 3.3574 -0.8331 1.4440 8 6 3.8458 -1.5242 2.6398 9 1 3.1728 -1.3278 3.4744 10 6 5.2485 -1.0187 2.9849 11 6 5.7463 -1.7162 4.2529 12 6 5.8240 -3.2259 4.0042 13 7 4.5145 -3.6951 3.5311 14 6 3.8867 -4.7150 4.1492 15 8 2.8058 -5.0933 3.7498 16 6 4.5279 -5.3856 5.3369 17 16 3.4480 -6.7073 5.9392 18 6 4.4141 -7.3011 7.2878 19 1 5.3675 -6.8454 7.5110 20 6 3.9505 -8.3552 8.0626 21 7 2.7888 -8.9110 7.7904 22 14 4.9752 -8.9852 9.4919 23 1 6.2304 -8.1974 9.5862 24 1 4.2051 -8.8431 10.7536 25 1 5.3048 -10.4164 9.2717 26 6 3.9021 -3.0315 2.3721 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.9878 -0.4644 0.8054 37 1 5.2156 0.0579 3.1518 38 1 5.9265 -1.2376 2.1601 39 1 6.7357 -1.3387 4.5112 40 1 5.0557 -1.5176 5.0724 41 1 6.5811 -3.4331 3.2479 42 1 6.0823 -3.7362 4.9321 43 1 5.4882 -5.8080 5.0410 44 1 4.6819 -4.6524 6.1287 45 1 2.4645 -9.6474 8.3320 46 1 2.8924 -3.4142 2.2233 47 1 4.5001 -3.2223 1.4810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357759917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:26 Heat of formation + Delta-G solvation = -117.546255 kcal Electronic energy + Delta-G solvation = -26222.702771 eV Core-core repulsion = 22529.789241 eV Total energy + Delta-G solvation = -3692.913530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67262 -40.84142 -38.58878 -36.63732 -35.80776 -34.60127 -33.31101 -31.90069 -30.02801 -28.20852 -28.04607 -27.71283 -26.24689 -25.00964 -23.16316 -22.16735 -20.72411 -20.11895 -19.49067 -18.28855 -17.76081 -17.30232 -17.13361 -16.89520 -16.58367 -16.16668 -15.81198 -15.50309 -15.40524 -14.94290 -14.79385 -14.58901 -14.44886 -14.32460 -14.19771 -13.73002 -13.50356 -13.33268 -13.17990 -13.06283 -12.93790 -12.92339 -12.67153 -12.63750 -12.60469 -12.10371 -12.01328 -11.92225 -11.87569 -11.71179 -11.65241 -11.17311 -11.01312 -10.70796 -10.41114 -10.27389 -9.63892 -8.70913 -8.35759 -6.15397 1.21455 1.41216 1.42213 1.49824 1.56158 1.61408 1.89785 2.25216 2.29754 2.98399 3.22474 3.54477 3.59497 3.72195 3.82564 3.85718 3.93036 3.94225 4.04344 4.16273 4.22353 4.27431 4.39094 4.52036 4.54742 4.68958 4.72580 4.73671 4.76612 4.81665 4.89232 4.94078 4.94693 5.00552 5.03414 5.12063 5.19396 5.27751 5.32399 5.35273 5.37742 5.40407 5.56871 6.18618 6.23107 6.52255 7.04886 7.09158 7.25422 8.74052 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.002473 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.317507 B =11319.560165 C =12104.963424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.135 4.135 4 C -0.138 4.138 5 C 0.511 3.489 6 O -0.590 6.590 7 N -0.705 5.705 8 C 0.137 3.863 9 H 0.051 0.949 10 C -0.113 4.113 11 C -0.128 4.128 12 C 0.093 3.907 13 N -0.605 5.605 14 C 0.527 3.473 15 O -0.571 6.571 16 C -0.118 4.118 17 S -0.162 6.162 18 C -0.541 4.541 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.914 5.914 22 Si 1.003 2.997 23 H -0.253 1.253 24 H -0.275 1.275 25 H -0.273 1.273 26 C 0.106 3.894 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.420 0.580 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.045 0.955 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.305 25.716 -18.481 33.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.192 4.192 4 C -0.196 4.196 5 C 0.299 3.701 6 O -0.470 6.470 7 N -0.358 5.358 8 C 0.031 3.969 9 H 0.069 0.931 10 C -0.151 4.151 11 C -0.167 4.167 12 C -0.028 4.028 13 N -0.339 5.339 14 C 0.315 3.685 15 O -0.450 6.450 16 C -0.269 4.269 17 S 0.065 5.935 18 C -0.689 4.689 19 H 0.104 0.896 20 C -0.195 4.195 21 N -0.550 5.550 22 Si 0.824 3.176 23 H -0.177 1.177 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.018 4.018 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.259 0.741 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.060 24.733 -18.480 32.176 hybrid contribution 0.943 -0.495 1.302 1.682 sum 10.002 24.238 -17.177 31.347 Atomic orbital electron populations 1.21699 0.93100 1.01571 1.02477 1.20883 0.97323 0.97873 0.92454 1.21870 1.02408 0.91519 1.03396 1.21895 1.02418 0.99628 0.95610 1.21471 0.82416 0.78499 0.87707 1.90760 1.56884 1.50356 1.48969 1.45800 1.06897 1.57827 1.25258 1.21148 0.97712 0.90131 0.87917 0.93090 1.21789 0.92512 1.01428 0.99359 1.21917 1.03926 0.93316 0.97522 1.22221 0.82641 0.96109 1.01822 1.48052 1.21665 1.32845 1.31362 1.20323 0.84509 0.80004 0.83674 1.90696 1.23101 1.64709 1.66483 1.23338 1.03585 1.01525 0.98432 1.85742 1.30225 1.38728 1.38806 1.23212 1.07858 1.21611 1.16223 0.89606 1.26209 0.96639 0.95636 1.00973 1.70211 1.20430 1.23956 1.40427 0.84847 0.78205 0.78096 0.76421 1.17662 1.20026 1.19878 1.21902 0.98594 0.92786 0.88495 0.93709 0.89170 0.94382 0.89969 0.89224 0.93279 0.93959 0.89068 0.89996 0.74101 0.88953 0.87916 0.86245 0.92959 0.87983 0.89164 0.86855 0.87356 0.92014 0.93640 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.76 71.98 0.56 -1.81 16 2 C -0.08 -1.20 0.87 -52.93 -0.05 -1.25 16 3 C -0.13 -1.08 8.37 71.98 0.60 -0.48 16 4 C -0.14 -1.37 8.37 71.98 0.60 -0.77 16 5 C 0.51 11.81 6.45 87.66 0.57 12.38 16 6 O -0.59 -21.51 15.64 -3.00 -0.05 -21.56 16 7 N -0.70 -11.26 4.87 -442.18 -2.15 -13.42 16 8 C 0.14 2.83 2.61 45.07 0.12 2.94 16 9 H 0.05 1.51 7.58 -2.39 -0.02 1.50 16 10 C -0.11 -1.18 5.36 30.62 0.16 -1.02 16 11 C -0.13 -1.62 6.08 30.67 0.19 -1.44 16 12 C 0.09 1.66 6.34 86.36 0.55 2.21 16 13 N -0.60 -17.64 2.97 -818.88 -2.43 -20.08 16 14 C 0.53 21.96 7.72 87.66 0.68 22.64 16 15 O -0.57 -30.21 15.27 -3.04 -0.05 -30.26 16 16 C -0.12 -4.96 4.50 71.24 0.32 -4.64 16 17 S -0.16 -9.47 20.57 -56.49 -1.16 -10.63 16 18 C -0.54 -31.56 9.50 67.95 0.65 -30.91 16 19 H 0.09 4.60 7.80 -2.91 -0.02 4.57 16 20 C 0.01 0.57 5.49 84.86 0.47 1.04 16 21 N -0.91 -57.68 13.22 21.65 0.29 -57.39 16 22 Si 1.00 44.24 29.55 68.60 2.03 46.26 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.11 2.87 6.01 86.36 0.52 3.38 16 27 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 30 H 0.08 0.29 7.56 -2.39 -0.02 0.28 16 31 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.08 0.44 7.57 -2.39 -0.02 0.43 16 36 H 0.42 2.94 7.44 -92.70 -0.69 2.25 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 1.69 5.93 -2.39 -0.01 1.68 16 43 H 0.11 4.20 7.94 -2.39 -0.02 4.18 16 44 H 0.11 4.12 7.69 -2.39 -0.02 4.10 16 45 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 47 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -92.62 389.44 2.66 -89.96 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.26 Total: 14.83 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.93 Total: 2.28 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -4.30 Total: -90.88 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.09 Total: -51.82 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.16 Total: -10.63 kcal Total: -92.62 2.66 -89.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357759917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.583 kcal (2) G-P(sol) polarization free energy of solvation -92.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds