Wall clock time and date at job start Tue Mar 31 2020 15:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.50701 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.38173 * 119.55365 * 124.72629 * 4 3 2 6 6 C 1.39797 * 119.00164 * 179.77746 * 5 4 3 7 7 C 1.48144 * 120.92296 * 180.21469 * 6 5 4 8 8 O 1.21515 * 120.00465 * 311.49974 * 7 6 5 9 9 N 1.34779 * 119.99598 * 131.50639 * 7 6 5 10 10 C 1.46497 * 120.00256 * 3.26835 * 9 7 6 11 11 C 1.50710 * 109.46974 * 94.20810 * 10 9 7 12 12 H 1.07998 * 119.99302 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00130 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99637 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47111 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47234 * 120.00095 * 15 13 11 18 18 H 1.48506 * 109.47115 * 240.00080 * 15 13 11 19 19 C 1.46501 * 119.99853 * 183.27611 * 9 7 6 20 20 C 1.50698 * 109.47189 * 84.84634 * 19 9 7 21 21 C 1.34515 * 125.79099 * 89.72127 * 20 19 9 22 22 C 1.41381 * 106.84106 * 179.88852 * 21 20 19 23 23 C 1.34515 * 106.84089 * 0.36781 * 22 21 20 24 24 O 1.34297 * 108.41817 * 359.77521 * 23 22 21 25 25 C 1.39836 * 118.15124 * 0.49070 * 6 5 4 26 26 C 1.38124 * 119.00639 * 359.74603 * 25 6 5 27 27 N 1.31799 * 119.55215 * 305.00048 * 4 3 2 28 28 H 1.09000 * 109.47287 * 59.99513 * 1 2 3 29 29 H 1.08997 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46698 * 300.00073 * 1 2 3 31 31 H 1.08997 * 109.47123 * 119.99998 * 2 1 3 32 32 H 1.09000 * 109.46603 * 240.00289 * 2 1 3 33 33 H 1.09000 * 109.47449 * 300.00388 * 3 2 1 34 34 H 1.08998 * 109.47606 * 59.99793 * 3 2 1 35 35 H 1.07999 * 120.49893 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47345 * 214.20520 * 10 9 7 37 37 H 1.08999 * 109.47278 * 334.21422 * 10 9 7 38 38 H 0.97004 * 119.99943 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47422 * 204.84911 * 19 9 7 40 40 H 1.09002 * 109.47063 * 324.84611 * 19 9 7 41 41 H 1.08001 * 126.57560 * 0.02562 * 21 20 19 42 42 H 1.08001 * 126.57816 * 180.15880 * 22 21 20 43 43 H 1.08000 * 125.78928 * 179.75086 * 23 22 21 44 44 H 1.08002 * 120.49716 * 179.77681 * 25 6 5 45 45 H 1.07994 * 119.55579 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2282 2.1273 -0.9887 6 6 5.6261 2.1235 -0.9755 7 6 6.3991 2.8475 -2.0113 8 8 6.1239 2.7039 -3.1862 9 7 7.4078 3.6654 -1.6506 10 6 7.7865 3.7835 -0.2403 11 6 8.9114 2.8265 0.0596 12 1 9.3051 2.1940 -0.7223 13 6 9.4386 2.7592 1.3318 14 7 8.9595 3.5299 2.2836 15 14 10.8334 1.5736 1.7033 16 1 11.1888 0.8256 0.4706 17 1 12.0168 2.3346 2.1784 18 1 10.4039 0.6183 2.7561 19 6 8.1255 4.4364 -2.6688 20 6 7.3781 5.7143 -2.9507 21 6 7.5524 6.8849 -2.3115 22 6 6.6536 7.8076 -2.8942 23 6 5.9780 7.1435 -3.8492 24 8 6.4211 5.8761 -3.8789 25 6 6.2744 1.4125 0.0392 26 6 5.5145 0.7514 0.9844 27 7 4.1975 0.7847 0.9382 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 3.6887 2.6609 -1.7573 36 1 8.1128 4.8032 -0.0359 37 1 6.9284 3.5437 0.3876 38 1 9.3301 3.4823 3.1788 39 1 9.1262 4.6730 -2.3071 40 1 8.1994 3.8492 -3.5841 41 1 8.2473 7.0827 -1.5087 42 1 6.5304 8.8456 -2.6223 43 1 5.2095 7.5590 -4.4841 44 1 7.3530 1.3812 0.0834 45 1 6.0060 0.1999 1.7722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357831667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:10 Heat of formation + Delta-G solvation = 6.120074 kcal Electronic energy + Delta-G solvation = -27927.387580 eV Core-core repulsion = 24104.392673 eV Total energy + Delta-G solvation = -3822.994907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23753 -40.21963 -38.65869 -35.42397 -34.99978 -33.05438 -32.58964 -32.17812 -31.04312 -30.15742 -27.55843 -26.66830 -26.01467 -23.75938 -22.90196 -22.42843 -21.40610 -21.26687 -20.28846 -18.79191 -17.26233 -16.90528 -16.45899 -16.29569 -15.81013 -15.53999 -15.06968 -14.89581 -14.74806 -14.51916 -14.31508 -13.87946 -13.52960 -13.48601 -12.86287 -12.73688 -12.54988 -12.52489 -12.48370 -12.30655 -12.04994 -11.91263 -11.48203 -11.36212 -11.14519 -11.04834 -10.90983 -10.86965 -10.64156 -10.38146 -9.95994 -9.70856 -9.62571 -9.28826 -8.89199 -8.72926 -8.42240 -8.25039 -8.00801 -6.34309 -4.43368 1.40305 1.59848 1.96205 2.83773 3.12162 3.14720 3.22863 3.25505 3.45456 3.78924 4.18250 4.26533 4.59485 4.86243 4.97097 5.00254 5.10020 5.11157 5.17078 5.29523 5.32393 5.42753 5.49253 5.62939 5.65662 5.70138 5.83255 5.84672 5.95749 5.99221 6.05543 6.07844 6.20027 6.23123 6.30388 6.36452 6.38893 6.49281 6.51378 6.76472 6.77639 7.05723 7.18099 7.29990 7.46363 7.58807 7.86330 8.06616 8.38462 8.58616 8.74912 9.23712 10.71477 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007337 B = 0.005286 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.396804 B = 5295.962781 C = 8335.164133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.063 4.063 4 C 0.108 3.892 5 C -0.129 4.129 6 C -0.074 4.074 7 C 0.560 3.440 8 O -0.552 6.552 9 N -0.584 5.584 10 C 0.231 3.769 11 C -0.548 4.548 12 H 0.067 0.933 13 C 0.072 3.928 14 N -0.879 5.879 15 Si 0.893 3.107 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.279 1.279 19 C 0.198 3.802 20 C -0.018 4.018 21 C -0.201 4.201 22 C -0.217 4.217 23 C -0.051 4.051 24 O -0.166 6.166 25 C -0.122 4.122 26 C 0.092 3.908 27 N -0.475 5.475 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.197 0.803 44 H 0.179 0.821 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 1.266 -4.918 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.101 4.101 4 C -0.030 4.030 5 C -0.150 4.150 6 C -0.085 4.085 7 C 0.348 3.652 8 O -0.431 6.431 9 N -0.314 5.314 10 C 0.112 3.888 11 C -0.586 4.586 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.515 5.515 15 Si 0.720 3.280 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.205 1.205 19 C 0.074 3.926 20 C -0.069 4.069 21 C -0.221 4.221 22 C -0.236 4.236 23 C -0.119 4.119 24 O -0.061 6.061 25 C -0.141 4.141 26 C -0.065 4.065 27 N -0.185 5.185 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.213 0.787 44 H 0.196 0.804 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.051 0.576 -4.875 10.296 hybrid contribution 1.384 0.391 0.003 1.438 sum -7.667 0.968 -4.872 9.135 Atomic orbital electron populations 1.21789 0.96009 1.01450 1.01631 1.21430 0.95092 0.96011 1.02831 1.20481 0.88793 0.98057 1.02744 1.20980 0.96294 0.94510 0.91213 1.21880 0.93253 1.00349 0.99492 1.20218 0.93774 0.98570 0.95963 1.18323 0.80080 0.79085 0.87711 1.90717 1.68860 1.65141 1.18391 1.48213 1.32124 1.40618 1.10398 1.19688 0.96691 0.98356 0.74099 1.21466 1.18504 1.22763 0.95882 0.91499 1.24948 0.96726 0.95758 0.95927 1.69936 1.41288 1.37800 1.02487 0.86509 0.81924 0.80862 0.78735 1.19406 1.20689 1.20514 1.19717 0.93470 0.85948 0.93442 1.23191 0.93355 0.98269 0.92124 1.21673 1.04077 0.92799 1.03541 1.21793 1.00622 1.01045 1.00167 1.23975 1.02599 0.82396 1.02975 1.84111 1.43839 1.29484 1.48639 1.23411 1.05272 0.93658 0.91786 1.22671 0.88716 0.97256 0.97824 1.67223 1.10588 1.17335 1.23327 0.92902 0.92868 0.92744 0.90832 0.92280 0.90743 0.90330 0.85161 0.94394 0.93663 0.92248 0.86497 0.89238 0.83344 0.83836 0.78662 0.80399 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.35 5.79 -26.73 -0.15 -1.51 16 3 C -0.06 -0.80 5.61 -27.88 -0.16 -0.96 16 4 C 0.11 1.79 6.18 -82.63 -0.51 1.28 16 5 C -0.13 -2.31 9.44 -39.02 -0.37 -2.68 16 6 C -0.07 -1.49 4.90 -104.65 -0.51 -2.00 16 7 C 0.56 11.96 7.25 -12.19 -0.09 11.87 16 8 O -0.55 -12.70 16.69 5.35 0.09 -12.61 16 9 N -0.58 -12.00 2.45 -177.43 -0.44 -12.44 16 10 C 0.23 5.18 4.65 -5.19 -0.02 5.15 16 11 C -0.55 -12.84 6.67 -34.44 -0.23 -13.07 16 12 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.88 -22.46 13.29 55.43 0.74 -21.73 16 15 Si 0.89 18.89 29.54 -169.99 -5.02 13.87 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 C 0.20 3.58 5.93 -5.19 -0.03 3.55 16 20 C -0.02 -0.31 6.86 -35.63 -0.24 -0.56 16 21 C -0.20 -3.28 10.81 -39.70 -0.43 -3.71 16 22 C -0.22 -3.10 10.91 -39.70 -0.43 -3.53 16 23 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 24 O -0.17 -2.95 10.65 5.73 0.06 -2.89 16 25 C -0.12 -2.40 7.73 -39.03 -0.30 -2.70 16 26 C 0.09 1.66 11.17 -17.60 -0.20 1.46 16 27 N -0.47 -8.38 9.85 -9.52 -0.09 -8.48 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.13 2.16 7.95 -52.49 -0.42 1.75 16 36 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.05 1.09 5.66 -51.93 -0.29 0.80 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.12 1.94 8.03 -51.93 -0.42 1.52 16 40 H 0.09 1.61 7.54 -51.93 -0.39 1.22 16 41 H 0.15 2.31 8.06 -52.49 -0.42 1.88 16 42 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.18 3.76 4.79 -52.49 -0.25 3.51 16 45 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -28.55 382.10 -8.32 -36.87 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.36 Total: 8.82 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.05 Total: -7.18 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.21 Total: -42.64 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.15 Total: -15.49 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.55 -8.32 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357831667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.989 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds