Wall clock time and date at job start Tue Mar 31 2020 15:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.50701 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.38173 * 119.55365 * 124.72629 * 4 3 2 6 6 C 1.39797 * 119.00164 * 179.77746 * 5 4 3 7 7 C 1.48144 * 120.92296 * 180.21469 * 6 5 4 8 8 O 1.21515 * 120.00465 * 311.49974 * 7 6 5 9 9 N 1.34779 * 119.99598 * 131.50639 * 7 6 5 10 10 C 1.46497 * 120.00256 * 3.26835 * 9 7 6 11 11 C 1.50710 * 109.46974 * 94.20810 * 10 9 7 12 12 H 1.07998 * 119.99302 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00130 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99637 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47111 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47234 * 120.00095 * 15 13 11 18 18 H 1.48506 * 109.47115 * 240.00080 * 15 13 11 19 19 C 1.46501 * 119.99853 * 183.27611 * 9 7 6 20 20 C 1.50698 * 109.47189 * 84.84634 * 19 9 7 21 21 C 1.34515 * 125.79099 * 89.72127 * 20 19 9 22 22 C 1.41381 * 106.84106 * 179.88852 * 21 20 19 23 23 C 1.34515 * 106.84089 * 0.36781 * 22 21 20 24 24 O 1.34297 * 108.41817 * 359.77521 * 23 22 21 25 25 C 1.39836 * 118.15124 * 0.49070 * 6 5 4 26 26 C 1.38124 * 119.00639 * 359.74603 * 25 6 5 27 27 N 1.31799 * 119.55215 * 305.00048 * 4 3 2 28 28 H 1.09000 * 109.47287 * 59.99513 * 1 2 3 29 29 H 1.08997 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46698 * 300.00073 * 1 2 3 31 31 H 1.08997 * 109.47123 * 119.99998 * 2 1 3 32 32 H 1.09000 * 109.46603 * 240.00289 * 2 1 3 33 33 H 1.09000 * 109.47449 * 300.00388 * 3 2 1 34 34 H 1.08998 * 109.47606 * 59.99793 * 3 2 1 35 35 H 1.07999 * 120.49893 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47345 * 214.20520 * 10 9 7 37 37 H 1.08999 * 109.47278 * 334.21422 * 10 9 7 38 38 H 0.97004 * 119.99943 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47422 * 204.84911 * 19 9 7 40 40 H 1.09002 * 109.47063 * 324.84611 * 19 9 7 41 41 H 1.08001 * 126.57560 * 0.02562 * 21 20 19 42 42 H 1.08001 * 126.57816 * 180.15880 * 22 21 20 43 43 H 1.08000 * 125.78928 * 179.75086 * 23 22 21 44 44 H 1.08002 * 120.49716 * 179.77681 * 25 6 5 45 45 H 1.07994 * 119.55579 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2282 2.1273 -0.9887 6 6 5.6261 2.1235 -0.9755 7 6 6.3991 2.8475 -2.0113 8 8 6.1239 2.7039 -3.1862 9 7 7.4078 3.6654 -1.6506 10 6 7.7865 3.7835 -0.2403 11 6 8.9114 2.8265 0.0596 12 1 9.3051 2.1940 -0.7223 13 6 9.4386 2.7592 1.3318 14 7 8.9595 3.5299 2.2836 15 14 10.8334 1.5736 1.7033 16 1 11.1888 0.8256 0.4706 17 1 12.0168 2.3346 2.1784 18 1 10.4039 0.6183 2.7561 19 6 8.1255 4.4364 -2.6688 20 6 7.3781 5.7143 -2.9507 21 6 7.5524 6.8849 -2.3115 22 6 6.6536 7.8076 -2.8942 23 6 5.9780 7.1435 -3.8492 24 8 6.4211 5.8761 -3.8789 25 6 6.2744 1.4125 0.0392 26 6 5.5145 0.7514 0.9844 27 7 4.1975 0.7847 0.9382 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 3.6887 2.6609 -1.7573 36 1 8.1128 4.8032 -0.0359 37 1 6.9284 3.5437 0.3876 38 1 9.3301 3.4823 3.1788 39 1 9.1262 4.6730 -2.3071 40 1 8.1994 3.8492 -3.5841 41 1 8.2473 7.0827 -1.5087 42 1 6.5304 8.8456 -2.6223 43 1 5.2095 7.5590 -4.4841 44 1 7.3530 1.3812 0.0834 45 1 6.0060 0.1999 1.7722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357831667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:09 Heat of formation + Delta-G solvation = -7.705919 kcal Electronic energy + Delta-G solvation = -27927.987120 eV Core-core repulsion = 24104.392673 eV Total energy + Delta-G solvation = -3823.594447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.48817 -41.72164 -40.21346 -37.12177 -36.06969 -34.77949 -33.94013 -33.62523 -32.29911 -31.53422 -29.29616 -27.80939 -27.41269 -25.38541 -24.52325 -23.73948 -22.63503 -22.36102 -21.53523 -20.29535 -18.83719 -18.42719 -18.05967 -17.81418 -17.18779 -16.98329 -16.52036 -16.45835 -16.04972 -15.82158 -15.71800 -15.20495 -14.83027 -14.74415 -14.47238 -14.28903 -13.95036 -13.75338 -13.71352 -13.59320 -13.46554 -13.03828 -12.93000 -12.78376 -12.69343 -12.55729 -12.16740 -12.14365 -12.00488 -11.74842 -11.56294 -11.37593 -10.85651 -10.80321 -10.57785 -10.36345 -9.84548 -9.77054 -9.44305 -8.21852 -6.35886 -0.10562 0.17554 0.69368 1.43030 1.48503 1.55692 1.57454 1.68161 2.13375 2.27012 2.42314 2.81636 3.08517 3.34208 3.40173 3.78089 3.80254 4.00146 4.08669 4.14056 4.15605 4.21901 4.28043 4.33709 4.45550 4.52274 4.64750 4.74130 4.74733 4.84835 4.89370 4.92637 4.98183 5.00985 5.07813 5.16877 5.17257 5.24319 5.28528 5.38370 5.51159 5.54267 5.61374 5.70279 5.74699 5.99748 6.20938 6.36835 6.73651 6.96813 7.03666 7.34554 8.84189 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007337 B = 0.005286 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.396804 B = 5295.962781 C = 8335.164133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.062 4.062 4 C 0.114 3.886 5 C -0.135 4.135 6 C -0.093 4.093 7 C 0.557 3.443 8 O -0.574 6.574 9 N -0.583 5.583 10 C 0.250 3.750 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.036 3.964 14 N -0.910 5.910 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.276 1.276 19 C 0.196 3.804 20 C -0.048 4.048 21 C -0.203 4.203 22 C -0.224 4.224 23 C -0.042 4.042 24 O -0.190 6.190 25 C -0.136 4.136 26 C 0.091 3.909 27 N -0.479 5.479 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.023 0.977 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.174 0.826 43 H 0.240 0.760 44 H 0.161 0.839 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 1.633 -5.039 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.100 4.100 4 C -0.024 4.024 5 C -0.155 4.155 6 C -0.103 4.103 7 C 0.345 3.655 8 O -0.455 6.455 9 N -0.312 5.312 10 C 0.130 3.870 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.166 4.166 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.201 1.201 19 C 0.074 3.926 20 C -0.098 4.098 21 C -0.223 4.223 22 C -0.242 4.242 23 C -0.110 4.110 24 O -0.086 6.086 25 C -0.156 4.156 26 C -0.065 4.065 27 N -0.189 5.189 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.160 0.840 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.168 0.832 42 H 0.191 0.809 43 H 0.256 0.744 44 H 0.179 0.821 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.456 0.949 -5.001 11.629 hybrid contribution 1.754 0.345 -0.005 1.788 sum -8.702 1.294 -5.006 10.122 Atomic orbital electron populations 1.21748 0.93889 1.02299 1.02435 1.21388 0.96881 0.94854 1.01894 1.20640 0.85893 0.99248 1.04205 1.21608 0.98190 0.92698 0.89893 1.22096 0.92453 1.00690 1.00274 1.20301 0.94813 0.99170 0.96058 1.18578 0.80119 0.79014 0.87766 1.90685 1.69559 1.66049 1.19243 1.48213 1.32096 1.40752 1.10132 1.19309 0.95666 0.97078 0.74918 1.21528 1.18433 1.22531 0.95811 0.92029 1.25531 0.98509 0.96903 0.95695 1.70023 1.42599 1.39266 1.02842 0.85620 0.79298 0.79077 0.78454 1.19240 1.20745 1.20108 1.19779 0.93921 0.86314 0.92627 1.22993 0.94813 0.98332 0.93709 1.21907 1.04208 0.93038 1.03152 1.22154 0.99928 1.02206 0.99954 1.24895 1.02369 0.80916 1.02799 1.84088 1.44140 1.31479 1.48934 1.23210 1.04484 0.95104 0.92805 1.22939 0.89045 0.96850 0.97662 1.67351 1.10212 1.17602 1.23693 0.91965 0.92066 0.92068 0.92058 0.92989 0.88840 0.89232 0.83983 0.95930 0.95349 0.92172 0.85646 0.89585 0.83197 0.80853 0.74431 0.82141 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.11 -2.41 5.79 30.59 0.18 -2.23 16 3 C -0.06 -1.46 5.61 29.85 0.17 -1.29 16 4 C 0.11 3.67 6.18 42.55 0.26 3.93 16 5 C -0.13 -4.79 9.44 22.63 0.21 -4.57 16 6 C -0.09 -3.78 4.90 -19.88 -0.10 -3.88 16 7 C 0.56 24.44 7.25 86.87 0.63 25.07 16 8 O -0.57 -27.04 16.69 -3.76 -0.06 -27.10 16 9 N -0.58 -24.75 2.45 -833.57 -2.04 -26.80 16 10 C 0.25 11.59 4.65 85.64 0.40 11.99 16 11 C -0.54 -26.07 6.67 25.60 0.17 -25.90 16 12 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 13 C 0.04 1.74 5.46 84.65 0.46 2.21 16 14 N -0.91 -47.04 13.29 21.45 0.28 -46.76 16 15 Si 0.95 38.87 29.54 68.60 2.03 40.89 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 19 C 0.20 7.35 5.93 85.63 0.51 7.85 16 20 C -0.05 -1.70 6.86 24.83 0.17 -1.53 16 21 C -0.20 -6.57 10.81 22.19 0.24 -6.33 16 22 C -0.22 -5.93 10.91 22.19 0.24 -5.69 16 23 C -0.04 -1.10 12.09 66.97 0.81 -0.30 16 24 O -0.19 -6.69 10.65 -2.42 -0.03 -6.71 16 25 C -0.14 -5.50 7.73 22.63 0.17 -5.32 16 26 C 0.09 3.30 11.17 84.67 0.95 4.24 16 27 N -0.48 -16.56 9.85 -184.05 -1.81 -18.37 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.85 7.87 -2.39 -0.02 1.84 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.14 4.62 7.95 -2.91 -0.02 4.60 16 36 H 0.02 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.03 1.42 5.66 -2.39 -0.01 1.41 16 38 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 39 H 0.13 4.32 8.03 -2.39 -0.02 4.30 16 40 H 0.09 3.22 7.54 -2.39 -0.02 3.21 16 41 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 44 H 0.16 7.04 4.79 -2.91 -0.01 7.02 16 45 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -61.69 382.10 5.55 -56.14 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.99 Total: 32.09 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.19 Total: -3.38 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.57 Total: -91.93 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.09 Total: -33.81 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -61.69 5.55 -56.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357831667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.438 kcal (2) G-P(sol) polarization free energy of solvation -61.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds