Wall clock time and date at job start Tue Mar 31 2020 15:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47172 * 2 1 4 4 C 1.53003 * 109.47362 * 239.99945 * 2 1 3 5 5 C 1.50695 * 109.46858 * 59.99942 * 4 2 1 6 6 H 1.08000 * 120.00472 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99951 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00384 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46892 * 89.99874 * 9 7 5 11 11 H 1.48499 * 109.47513 * 209.99956 * 9 7 5 12 12 H 1.48504 * 109.47063 * 330.00089 * 9 7 5 13 13 C 1.52996 * 109.47250 * 119.99594 * 2 1 3 14 14 N 1.46501 * 109.47540 * 300.00219 * 13 2 1 15 15 C 1.34771 * 120.00441 * 179.97438 * 14 13 2 16 16 O 1.21543 * 120.00147 * 359.97438 * 15 14 13 17 17 C 1.47928 * 120.00232 * 180.02562 * 15 14 13 18 18 C 1.38614 * 121.05963 * 354.12793 * 17 15 14 19 19 C 1.40027 * 119.53871 * 180.02562 * 18 17 15 20 20 O 1.35587 * 119.14179 * 180.02562 * 19 18 17 21 21 N 1.31408 * 121.71284 * 0.27726 * 19 18 17 22 22 C 1.33653 * 121.76628 * 359.44006 * 21 19 18 23 23 C 1.40667 * 120.88614 * 180.28022 * 22 21 19 24 24 C 1.36101 * 119.75547 * 180.26933 * 23 22 21 25 25 C 1.39306 * 121.02557 * 359.97438 * 24 23 22 26 26 C 1.36283 * 120.82037 * 0.02900 * 25 24 23 27 27 C 1.40068 * 119.66126 * 359.95017 * 26 25 24 28 28 H 1.09001 * 109.47502 * 299.99912 * 1 2 3 29 29 H 1.09002 * 109.47352 * 60.00446 * 1 2 3 30 30 H 1.09009 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47017 * 300.00195 * 3 2 1 33 33 H 1.09006 * 109.47253 * 59.99455 * 3 2 1 34 34 H 1.09002 * 109.46736 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.46998 * 299.99540 * 4 2 1 36 36 H 0.97002 * 120.00327 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47013 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.47208 * 60.00400 * 13 2 1 39 39 H 0.96998 * 119.99690 * 0.02562 * 14 13 2 40 40 H 1.08003 * 120.23163 * 0.04735 * 18 17 15 41 41 H 0.96698 * 114.00239 * 90.00100 * 20 19 18 42 42 H 1.07999 * 120.12268 * 0.24194 * 23 22 21 43 43 H 1.07997 * 119.49044 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.58848 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.16479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2471 0.3979 -5.2572 10 1 2.2251 1.4395 -5.6619 11 1 1.0818 -0.5815 -6.3611 12 1 -0.0610 1.0354 -4.9611 13 6 2.0399 -0.7211 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6695 16 8 2.5748 -1.4799 3.7811 17 6 1.3832 0.2058 4.8774 18 6 0.6872 1.4005 4.7794 19 6 0.2349 2.0335 5.9436 20 8 -0.4456 3.2015 5.8384 21 7 0.4571 1.5274 7.1358 22 6 1.1166 0.3766 7.3000 23 6 1.3391 -0.1512 8.5847 24 6 2.0183 -1.3222 8.7256 25 6 2.4994 -2.0113 7.6146 26 6 2.3025 -1.5296 6.3550 27 6 1.6071 -0.3274 6.1735 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6768 -1.7489 -1.2492 36 1 2.8609 -1.8829 -4.7335 37 1 3.1300 -0.7207 1.2494 38 1 1.6767 -1.7488 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.4947 1.8399 3.8117 41 1 -1.4029 3.0929 5.7559 42 1 0.9726 0.3709 9.4562 43 1 2.1871 -1.7234 9.7140 44 1 3.0351 -2.9388 7.7532 45 1 2.6796 -2.0728 5.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359754697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:30 Heat of formation + Delta-G solvation = -28.101416 kcal Electronic energy + Delta-G solvation = -27273.055759 eV Core-core repulsion = 23448.576897 eV Total energy + Delta-G solvation = -3824.478862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.46864 -39.62105 -38.61487 -37.26064 -36.12667 -34.04760 -33.57792 -32.18604 -30.38586 -30.02343 -27.28941 -26.66193 -26.61030 -24.94343 -23.80443 -23.23659 -22.40932 -20.89280 -19.41537 -18.42726 -18.28335 -17.53250 -17.13188 -16.38805 -15.99567 -15.58138 -15.36251 -15.15696 -14.97855 -14.61614 -14.53068 -14.09507 -13.69801 -13.59997 -13.37705 -13.17239 -12.83858 -12.35678 -12.29592 -12.11867 -11.91170 -11.72386 -11.67397 -11.27542 -11.08319 -10.91136 -10.79160 -10.70980 -10.50597 -10.47340 -10.32380 -9.97509 -9.54643 -9.24489 -9.03556 -9.00085 -8.99596 -8.49912 -8.41050 -6.05139 -4.06756 -0.22260 0.40193 1.45856 2.35902 2.95521 2.99348 3.18987 3.27523 3.34945 3.36278 3.79179 4.10639 4.32202 4.39758 4.42703 4.51766 4.77632 4.83402 4.99046 5.13957 5.22384 5.30362 5.33945 5.42357 5.50478 5.62615 5.65471 5.81323 5.99250 6.04943 6.09436 6.10977 6.20255 6.22495 6.27046 6.40464 6.53938 6.57468 6.64330 6.95748 6.98557 7.02485 7.07366 7.42830 7.49237 7.57175 7.68453 7.92858 8.08318 8.34319 8.97832 9.56779 11.06261 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002542 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.458135 B =11010.564217 C =12099.799143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.706 5.706 15 C 0.554 3.446 16 O -0.526 6.526 17 C -0.048 4.048 18 C -0.152 4.152 19 C 0.339 3.661 20 O -0.479 6.479 21 N -0.482 5.482 22 C 0.148 3.852 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.093 4.093 27 C -0.077 4.077 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.149 0.851 41 H 0.405 0.595 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 3.707 22.747 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.357 5.357 15 C 0.339 3.661 16 O -0.405 6.405 17 C -0.058 4.058 18 C -0.174 4.174 19 C 0.145 3.855 20 O -0.286 6.286 21 N -0.202 5.202 22 C 0.027 3.973 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.111 4.111 27 C -0.080 4.080 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.166 0.834 41 H 0.263 0.737 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.295 3.550 23.438 24.091 hybrid contribution -0.797 0.428 -1.719 1.942 sum -5.092 3.978 21.719 22.660 Atomic orbital electron populations 1.21780 0.95185 1.01291 1.00294 1.20931 0.95542 0.95927 0.94941 1.21785 1.00712 0.95786 1.00317 1.19092 0.96423 0.95240 0.89356 1.21160 1.31323 1.12117 0.90472 0.92238 1.25011 0.95291 0.95044 0.99117 1.69959 1.36881 1.22957 1.23525 0.86644 0.79192 0.79421 0.83030 1.20743 1.21316 1.19938 1.21782 0.99305 0.96201 0.82361 1.46173 1.52217 1.31683 1.05641 1.17971 0.80929 0.84194 0.82989 1.90596 1.38153 1.25946 1.85756 1.20389 0.96927 0.94657 0.93873 1.22400 0.99876 0.94986 1.00188 1.19078 0.93573 0.85563 0.87257 1.84773 1.24274 1.24808 1.94753 1.67243 1.15401 1.11112 1.26395 1.18507 0.95561 0.89720 0.93559 1.20755 0.99985 0.96452 0.95095 1.21017 0.96188 0.94436 0.99460 1.21131 1.00082 1.00472 0.92369 1.22127 0.95032 0.94090 0.99828 1.18680 1.00241 0.97239 0.91792 0.95401 0.91204 0.93220 0.93189 0.91212 0.95363 0.96253 0.96251 0.92984 0.91199 0.91195 0.76361 0.83357 0.73693 0.84528 0.85109 0.85174 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.05 37.15 0.30 -1.80 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.16 7.65 -34.44 -0.26 -13.42 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.13 2.05 4.56 -4.04 -0.02 2.03 16 14 N -0.71 -9.48 4.91 -61.23 -0.30 -9.78 16 15 C 0.55 7.88 7.75 -12.29 -0.10 7.78 16 16 O -0.53 -8.81 13.51 5.33 0.07 -8.74 16 17 C -0.05 -0.59 5.93 -104.38 -0.62 -1.21 16 18 C -0.15 -1.59 9.52 -38.77 -0.37 -1.96 16 19 C 0.34 3.70 7.71 -17.06 -0.13 3.57 16 20 O -0.48 -4.20 13.54 -18.46 -0.25 -4.45 16 21 N -0.48 -5.97 10.32 -11.07 -0.11 -6.08 16 22 C 0.15 1.81 6.61 -84.87 -0.56 1.25 16 23 C -0.10 -1.02 9.98 -39.43 -0.39 -1.42 16 24 C -0.09 -0.76 9.94 -39.95 -0.40 -1.16 16 25 C -0.12 -1.16 9.96 -39.89 -0.40 -1.56 16 26 C -0.09 -1.13 9.24 -39.60 -0.37 -1.49 16 27 C -0.08 -0.98 5.76 -106.51 -0.61 -1.60 16 28 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.25 6.62 -51.92 -0.34 0.90 16 33 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.40 4.49 4.33 -40.82 -0.18 4.31 16 40 H 0.15 1.20 6.54 -52.48 -0.34 0.85 16 41 H 0.40 1.44 9.06 45.56 0.41 1.85 16 42 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.17 2.32 4.97 -52.49 -0.26 2.06 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -32.06 366.07 -8.29 -40.35 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.01 Total: 4.57 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.92 Total: -12.01 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.32 Total: -40.97 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.18 Total: -13.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.06 -8.29 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.247 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds