Wall clock time and date at job start Tue Mar 31 2020 15:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47172 * 2 1 4 4 C 1.53003 * 109.47362 * 239.99945 * 2 1 3 5 5 C 1.50695 * 109.46858 * 59.99942 * 4 2 1 6 6 H 1.08000 * 120.00472 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99951 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00384 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46892 * 89.99874 * 9 7 5 11 11 H 1.48499 * 109.47513 * 209.99956 * 9 7 5 12 12 H 1.48504 * 109.47063 * 330.00089 * 9 7 5 13 13 C 1.52996 * 109.47250 * 119.99594 * 2 1 3 14 14 N 1.46501 * 109.47540 * 300.00219 * 13 2 1 15 15 C 1.34771 * 120.00441 * 179.97438 * 14 13 2 16 16 O 1.21543 * 120.00147 * 359.97438 * 15 14 13 17 17 C 1.47928 * 120.00232 * 180.02562 * 15 14 13 18 18 C 1.38614 * 121.05963 * 354.12793 * 17 15 14 19 19 C 1.40027 * 119.53871 * 180.02562 * 18 17 15 20 20 O 1.35587 * 119.14179 * 180.02562 * 19 18 17 21 21 N 1.31408 * 121.71284 * 0.27726 * 19 18 17 22 22 C 1.33653 * 121.76628 * 359.44006 * 21 19 18 23 23 C 1.40667 * 120.88614 * 180.28022 * 22 21 19 24 24 C 1.36101 * 119.75547 * 180.26933 * 23 22 21 25 25 C 1.39306 * 121.02557 * 359.97438 * 24 23 22 26 26 C 1.36283 * 120.82037 * 0.02900 * 25 24 23 27 27 C 1.40068 * 119.66126 * 359.95017 * 26 25 24 28 28 H 1.09001 * 109.47502 * 299.99912 * 1 2 3 29 29 H 1.09002 * 109.47352 * 60.00446 * 1 2 3 30 30 H 1.09009 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47017 * 300.00195 * 3 2 1 33 33 H 1.09006 * 109.47253 * 59.99455 * 3 2 1 34 34 H 1.09002 * 109.46736 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.46998 * 299.99540 * 4 2 1 36 36 H 0.97002 * 120.00327 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47013 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.47208 * 60.00400 * 13 2 1 39 39 H 0.96998 * 119.99690 * 0.02562 * 14 13 2 40 40 H 1.08003 * 120.23163 * 0.04735 * 18 17 15 41 41 H 0.96698 * 114.00239 * 90.00100 * 20 19 18 42 42 H 1.07999 * 120.12268 * 0.24194 * 23 22 21 43 43 H 1.07997 * 119.49044 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.58848 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.16479 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2471 0.3979 -5.2572 10 1 2.2251 1.4395 -5.6619 11 1 1.0818 -0.5815 -6.3611 12 1 -0.0610 1.0354 -4.9611 13 6 2.0399 -0.7211 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8768 -0.4912 3.6695 16 8 2.5748 -1.4799 3.7811 17 6 1.3832 0.2058 4.8774 18 6 0.6872 1.4005 4.7794 19 6 0.2349 2.0335 5.9436 20 8 -0.4456 3.2015 5.8384 21 7 0.4571 1.5274 7.1358 22 6 1.1166 0.3766 7.3000 23 6 1.3391 -0.1512 8.5847 24 6 2.0183 -1.3222 8.7256 25 6 2.4994 -2.0113 7.6146 26 6 2.3025 -1.5296 6.3550 27 6 1.6071 -0.3274 6.1735 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6768 -1.7489 -1.2492 36 1 2.8609 -1.8829 -4.7335 37 1 3.1300 -0.7207 1.2494 38 1 1.6767 -1.7488 1.2493 39 1 0.9936 0.7579 2.3564 40 1 0.4947 1.8399 3.8117 41 1 -1.4029 3.0929 5.7559 42 1 0.9726 0.3709 9.4562 43 1 2.1871 -1.7234 9.7140 44 1 3.0351 -2.9388 7.7532 45 1 2.6796 -2.0728 5.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359754697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:28 Heat of formation + Delta-G solvation = -51.246157 kcal Electronic energy + Delta-G solvation = -27274.059390 eV Core-core repulsion = 23448.576897 eV Total energy + Delta-G solvation = -3825.482493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -42.33788 -40.73941 -39.36213 -38.67179 -36.87398 -35.41561 -34.66017 -33.90749 -31.21991 -30.80498 -29.13332 -27.96477 -27.94845 -26.03814 -24.86399 -24.48210 -23.52598 -21.96200 -20.37625 -19.68171 -19.06670 -18.49938 -18.29007 -18.11524 -17.01234 -16.63464 -16.49419 -16.42347 -15.92596 -15.85811 -15.56442 -15.23979 -14.89268 -14.70254 -14.59954 -14.26026 -14.15827 -13.93480 -13.79952 -13.06101 -12.88136 -12.72695 -12.65735 -12.60362 -12.47633 -12.40491 -12.33474 -12.22969 -11.98562 -11.68223 -11.54550 -11.49420 -11.02065 -10.87299 -10.50552 -10.40931 -10.23934 -9.78419 -9.31686 -8.13553 -6.20874 -1.07286 -0.37738 0.61578 1.43238 1.43592 1.53078 1.53543 1.87124 1.99551 2.44302 2.45554 2.97089 3.21419 3.26061 3.46243 3.57922 3.73943 3.93473 4.05073 4.06985 4.10844 4.21125 4.31592 4.37940 4.43927 4.60014 4.67076 4.70476 4.77242 4.94906 4.95363 4.99295 5.11882 5.12811 5.24539 5.31400 5.40420 5.43271 5.51727 5.52861 5.54343 5.57491 5.80508 5.83356 5.90764 6.28929 6.36135 6.50304 6.74838 6.94498 6.99947 7.46937 8.98891 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.002542 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.458135 B =11010.564217 C =12099.799143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.125 4.125 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.140 3.860 14 N -0.694 5.694 15 C 0.556 3.444 16 O -0.557 6.557 17 C -0.066 4.066 18 C -0.136 4.136 19 C 0.337 3.663 20 O -0.481 6.481 21 N -0.496 5.496 22 C 0.129 3.871 23 C -0.109 4.109 24 C -0.083 4.083 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.093 4.093 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.069 0.931 34 H -0.013 1.013 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.413 0.587 40 H 0.175 0.825 41 H 0.427 0.573 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.153 0.847 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 5.764 24.705 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.016 3.984 14 N -0.346 5.346 15 C 0.343 3.657 16 O -0.437 6.437 17 C -0.076 4.076 18 C -0.158 4.158 19 C 0.144 3.856 20 O -0.292 6.292 21 N -0.216 5.216 22 C 0.008 3.992 23 C -0.127 4.127 24 C -0.102 4.102 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.096 4.096 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.193 0.807 41 H 0.289 0.711 42 H 0.172 0.828 43 H 0.186 0.814 44 H 0.171 0.829 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.003 5.646 25.408 26.711 hybrid contribution -0.280 -0.228 -2.209 2.239 sum -6.283 5.418 23.198 24.637 Atomic orbital electron populations 1.21723 0.93488 1.01167 1.01746 1.20714 0.96781 0.96276 0.92699 1.21733 1.00070 0.94655 1.01758 1.18974 0.94391 0.94293 0.92171 1.21592 1.30341 1.12037 0.91032 0.90878 1.25924 0.95739 0.95840 1.02670 1.70115 1.38847 1.24949 1.24058 0.85574 0.79201 0.78109 0.78932 1.20276 1.21706 1.18300 1.21366 0.98315 0.95664 0.83048 1.45884 1.52344 1.31886 1.04524 1.18250 0.80222 0.83748 0.83487 1.90600 1.39484 1.27397 1.86247 1.20200 0.98768 0.95787 0.92891 1.22605 0.98093 0.93790 1.01339 1.19196 0.93598 0.85832 0.87016 1.84737 1.26170 1.23706 1.94617 1.67289 1.15748 1.11369 1.27232 1.18805 0.96142 0.89979 0.94277 1.21083 0.99883 0.96978 0.94777 1.21395 0.94625 0.93538 1.00668 1.21465 0.98851 1.00961 0.91724 1.22031 0.96955 0.94730 1.00454 1.18845 1.00799 0.97687 0.92266 0.91153 0.92442 0.94220 0.94315 0.92388 0.91201 0.99432 0.99331 0.93214 0.92760 0.92605 0.74752 0.80732 0.71066 0.82801 0.81359 0.82934 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 2 C -0.06 -2.27 0.54 -52.18 -0.03 -2.30 16 3 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 4 C 0.04 1.92 4.04 29.85 0.12 2.04 16 5 C -0.51 -26.60 7.65 25.60 0.20 -26.41 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 9 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 C 0.14 4.61 4.56 86.38 0.39 5.00 16 14 N -0.69 -17.82 4.91 -465.90 -2.29 -20.11 16 15 C 0.56 15.76 7.75 86.81 0.67 16.43 16 16 O -0.56 -19.40 13.51 -3.85 -0.05 -19.45 16 17 C -0.07 -1.59 5.93 -19.71 -0.12 -1.71 16 18 C -0.14 -2.54 9.52 22.79 0.22 -2.32 16 19 C 0.34 6.62 7.71 85.19 0.66 7.27 16 20 O -0.48 -7.03 13.54 -88.96 -1.20 -8.24 16 21 N -0.50 -11.47 10.32 -302.29 -3.12 -14.59 16 22 C 0.13 3.00 6.61 40.29 0.27 3.27 16 23 C -0.11 -1.91 9.98 22.37 0.22 -1.69 16 24 C -0.08 -1.16 9.94 22.03 0.22 -0.94 16 25 C -0.11 -1.97 9.96 22.07 0.22 -1.75 16 26 C -0.12 -3.03 9.24 22.26 0.21 -2.82 16 27 C -0.09 -2.36 5.76 -21.09 -0.12 -2.48 16 28 H 0.07 1.58 6.86 -2.39 -0.02 1.56 16 29 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.97 6.62 -2.38 -0.02 1.95 16 33 H 0.07 1.60 6.86 -2.38 -0.02 1.59 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 8.02 4.33 -92.71 -0.40 7.62 16 40 H 0.18 2.14 6.54 -2.91 -0.02 2.12 16 41 H 0.43 1.66 9.06 -74.06 -0.67 0.99 16 42 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.15 4.32 4.97 -2.92 -0.01 4.30 16 Total: -1.00 -72.95 366.07 0.37 -72.58 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.02 Total: 15.68 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.75 Total: -14.82 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -5.13 Total: -90.58 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.26 Total: -27.69 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.95 0.37 -72.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359754697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.334 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds