Wall clock time and date at job start Tue Mar 31 2020 15:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 C 1.52998 * 109.47275 * 240.00291 * 2 1 3 5 5 C 1.50705 * 109.46950 * 59.99777 * 4 2 1 6 6 H 1.08001 * 120.00385 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00125 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47219 * 119.99618 * 9 7 5 12 12 H 1.48504 * 109.46793 * 239.99394 * 9 7 5 13 13 C 1.52991 * 109.47379 * 120.00112 * 2 1 3 14 14 N 1.46500 * 109.47288 * 299.99976 * 13 2 1 15 15 C 1.34777 * 120.00061 * 179.97438 * 14 13 2 16 16 O 1.21583 * 120.00270 * 0.02562 * 15 14 13 17 17 C 1.47599 * 119.99721 * 180.02562 * 15 14 13 18 18 C 1.39810 * 119.99574 * 179.97438 * 17 15 14 19 19 C 1.36584 * 119.99337 * 179.72187 * 18 17 15 20 20 C 1.39805 * 120.00504 * 0.25924 * 19 18 17 21 21 C 1.47579 * 120.00176 * 180.02562 * 20 19 18 22 22 C 1.35941 * 126.60079 * 179.70856 * 21 20 19 23 23 N 1.34036 * 107.49998 * 179.84174 * 22 21 20 24 24 C 1.30420 * 108.92548 * 0.43205 * 23 22 21 25 25 O 1.33940 * 109.06803 * 359.73161 * 24 23 22 26 26 C 1.39810 * 119.99772 * 359.97438 * 20 19 18 27 27 C 1.36579 * 120.00084 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.46912 * 299.99554 * 1 2 3 29 29 H 1.09001 * 109.47072 * 59.99718 * 1 2 3 30 30 H 1.08993 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46624 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47050 * 300.00297 * 3 2 1 33 33 H 1.08998 * 109.46537 * 60.00212 * 3 2 1 34 34 H 1.08995 * 109.47540 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47190 * 300.00094 * 4 2 1 36 36 H 0.96995 * 120.00171 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47398 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47172 * 59.99811 * 13 2 1 39 39 H 0.97000 * 120.00044 * 0.02562 * 14 13 2 40 40 H 1.08002 * 120.00647 * 0.02562 * 18 17 15 41 41 H 1.08004 * 119.99335 * 180.27800 * 19 18 17 42 42 H 1.08004 * 126.25000 * 359.97438 * 22 21 20 43 43 H 1.07996 * 125.47104 * 179.68897 * 24 23 22 44 44 H 1.08001 * 119.99790 * 179.97438 * 26 20 19 45 45 H 1.08004 * 119.99695 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8528 9 14 1.2483 0.3991 -5.2572 10 1 0.4236 1.5660 -4.8530 11 1 2.4035 0.8650 -6.0655 12 1 0.4226 -0.5338 -6.0655 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6694 16 8 2.5761 -1.4800 3.7810 17 6 1.3846 0.2040 4.8746 18 6 1.7216 -0.2744 6.1444 19 6 1.2705 0.3725 7.2595 20 6 0.4675 1.5098 7.1314 21 6 -0.0193 2.2090 8.3364 22 6 -0.7981 3.3228 8.3681 23 7 -1.0133 3.6276 9.6555 24 6 -0.3949 2.7578 10.4052 25 8 0.2283 1.8687 9.6209 26 6 0.1266 1.9852 5.8616 27 6 0.5775 1.3384 4.7464 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6768 -1.7488 -1.2493 36 1 2.8609 -1.8826 -4.7337 37 1 3.1300 -0.7208 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 2.3425 -1.1525 6.2435 41 1 1.5346 0.0056 8.2404 42 1 -1.1764 3.8621 7.5122 43 1 -0.3861 2.7552 11.4851 44 1 -0.4941 2.8635 5.7625 45 1 0.3145 1.7059 3.7655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:12 Heat of formation + Delta-G solvation = -1.222896 kcal Electronic energy + Delta-G solvation = -26424.885004 eV Core-core repulsion = 22601.571683 eV Total energy + Delta-G solvation = -3823.313322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.74714 -40.39369 -38.74464 -37.09611 -35.26555 -33.86863 -32.98635 -32.16037 -31.47144 -29.31355 -27.18281 -26.56703 -26.42236 -24.60398 -23.79630 -22.91574 -22.18788 -21.81381 -20.37780 -18.96102 -18.40483 -17.44543 -17.04887 -16.56367 -16.39213 -15.97916 -15.19578 -15.10777 -15.00122 -14.59973 -14.46369 -14.02348 -13.97291 -13.80451 -13.54103 -13.12424 -13.09440 -12.78875 -12.57707 -12.19058 -12.09627 -11.88194 -11.51074 -11.21448 -11.06356 -11.05377 -10.86743 -10.68945 -10.45679 -10.30541 -10.28298 -9.99299 -9.92982 -9.53095 -9.23029 -8.95421 -8.86962 -8.50558 -8.39047 -6.02815 -4.04239 -0.06890 0.98560 1.30456 2.16935 2.21668 2.83417 3.26781 3.28181 3.36608 3.38725 3.62042 3.73226 4.11798 4.36330 4.42622 4.45609 4.50868 4.66975 4.87395 4.94599 5.13731 5.29004 5.32740 5.35611 5.45648 5.55697 5.56809 5.69114 5.78622 5.84511 5.97168 5.98680 6.10371 6.16142 6.23654 6.33274 6.35741 6.47941 6.57956 6.68726 7.00619 7.02696 7.07383 7.17946 7.59824 7.62640 7.72478 7.95676 8.27134 8.37572 9.00713 9.59108 11.08601 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.001986 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.155097 B =14098.387205 C =14895.151483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.713 5.713 15 C 0.548 3.452 16 O -0.539 6.539 17 C -0.115 4.115 18 C -0.058 4.058 19 C -0.106 4.106 20 C 0.000 4.000 21 C -0.003 4.003 22 C -0.018 4.018 23 N -0.487 5.487 24 C 0.175 3.825 25 O -0.197 6.197 26 C -0.100 4.100 27 C -0.082 4.082 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.189 0.811 43 H 0.253 0.747 44 H 0.136 0.864 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 8.614 25.936 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.417 6.417 17 C -0.119 4.119 18 C -0.076 4.076 19 C -0.124 4.124 20 C -0.001 4.001 21 C -0.056 4.056 22 C -0.158 4.158 23 N -0.214 5.214 24 C -0.050 4.050 25 O -0.083 6.083 26 C -0.118 4.118 27 C -0.100 4.100 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.206 0.794 43 H 0.268 0.732 44 H 0.154 0.846 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.801 8.248 26.106 27.986 hybrid contribution -0.203 0.283 -1.109 1.162 sum -6.005 8.531 24.997 27.087 Atomic orbital electron populations 1.21774 0.95232 1.01269 1.00236 1.20923 0.95509 0.95893 0.95041 1.21776 1.00653 0.95845 1.00235 1.19096 0.96408 0.95250 0.89421 1.21214 1.31172 1.12089 0.90485 0.92180 1.25023 0.95322 0.95085 0.99132 1.69970 1.36931 1.23032 1.23368 0.86585 0.78598 0.79667 0.83422 1.19800 1.21136 1.21140 1.21699 0.99114 0.96126 0.82626 1.46154 1.52731 1.31813 1.05786 1.18176 0.80809 0.84271 0.83351 1.90789 1.38036 1.26057 1.86823 1.20296 1.00223 0.96977 0.94366 1.21006 0.97060 0.99168 0.90416 1.20990 0.97268 0.94619 0.99540 1.17790 0.98561 0.95254 0.88509 1.21471 1.03315 0.98419 0.82438 1.23407 1.00787 0.96456 0.95140 1.70365 1.21926 1.26574 1.02572 1.28205 0.92557 0.85165 0.99097 1.84486 1.59043 1.48541 1.16274 1.20712 1.00456 1.00451 0.90206 1.21021 0.95751 0.94127 0.99142 0.95350 0.91302 0.93257 0.93257 0.91302 0.95349 0.96280 0.96282 0.93071 0.91508 0.91507 0.76560 0.83896 0.84797 0.79445 0.73180 0.84609 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.16 4.56 -4.05 -0.02 2.14 16 14 N -0.71 -9.91 4.91 -61.33 -0.30 -10.21 16 15 C 0.55 8.01 7.76 -12.44 -0.10 7.92 16 16 O -0.54 -9.88 16.33 5.29 0.09 -9.79 16 17 C -0.12 -1.31 5.88 -104.90 -0.62 -1.93 16 18 C -0.06 -0.60 9.53 -39.59 -0.38 -0.98 16 19 C -0.11 -0.95 9.67 -39.59 -0.38 -1.33 16 20 C 0.00 0.00 5.88 -104.91 -0.62 -0.62 16 21 C 0.00 -0.03 7.06 -36.60 -0.26 -0.29 16 22 C -0.02 -0.15 11.29 -17.41 -0.20 -0.34 16 23 N -0.49 -4.27 11.27 -14.66 -0.17 -4.44 16 24 C 0.17 1.09 13.21 52.16 0.69 1.78 16 25 O -0.20 -1.59 10.58 4.23 0.04 -1.55 16 26 C -0.10 -0.76 9.51 -39.59 -0.38 -1.14 16 27 C -0.08 -0.71 9.48 -39.59 -0.38 -1.09 16 28 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 33 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.53 4.17 -40.82 -0.17 4.36 16 40 H 0.14 1.51 7.64 -52.49 -0.40 1.11 16 41 H 0.13 1.00 7.93 -52.48 -0.42 0.58 16 42 H 0.19 1.04 7.29 -52.48 -0.38 0.66 16 43 H 0.25 0.28 8.06 -52.49 -0.42 -0.15 16 44 H 0.14 0.67 7.02 -52.49 -0.37 0.30 16 45 H 0.14 0.93 6.38 -52.48 -0.34 0.60 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -33.27 373.14 -7.45 -40.72 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.87 Total: 1.46 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.58 Total: -12.38 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.27 Total: -39.99 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.13 Total: -11.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.27 -7.45 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.495 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds