Wall clock time and date at job start Tue Mar 31 2020 15:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 C 1.52998 * 109.47275 * 240.00291 * 2 1 3 5 5 C 1.50705 * 109.46950 * 59.99777 * 4 2 1 6 6 H 1.08001 * 120.00385 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00125 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47219 * 119.99618 * 9 7 5 12 12 H 1.48504 * 109.46793 * 239.99394 * 9 7 5 13 13 C 1.52991 * 109.47379 * 120.00112 * 2 1 3 14 14 N 1.46500 * 109.47288 * 299.99976 * 13 2 1 15 15 C 1.34777 * 120.00061 * 179.97438 * 14 13 2 16 16 O 1.21583 * 120.00270 * 0.02562 * 15 14 13 17 17 C 1.47599 * 119.99721 * 180.02562 * 15 14 13 18 18 C 1.39810 * 119.99574 * 179.97438 * 17 15 14 19 19 C 1.36584 * 119.99337 * 179.72187 * 18 17 15 20 20 C 1.39805 * 120.00504 * 0.25924 * 19 18 17 21 21 C 1.47579 * 120.00176 * 180.02562 * 20 19 18 22 22 C 1.35941 * 126.60079 * 179.70856 * 21 20 19 23 23 N 1.34036 * 107.49998 * 179.84174 * 22 21 20 24 24 C 1.30420 * 108.92548 * 0.43205 * 23 22 21 25 25 O 1.33940 * 109.06803 * 359.73161 * 24 23 22 26 26 C 1.39810 * 119.99772 * 359.97438 * 20 19 18 27 27 C 1.36579 * 120.00084 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.46912 * 299.99554 * 1 2 3 29 29 H 1.09001 * 109.47072 * 59.99718 * 1 2 3 30 30 H 1.08993 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46624 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47050 * 300.00297 * 3 2 1 33 33 H 1.08998 * 109.46537 * 60.00212 * 3 2 1 34 34 H 1.08995 * 109.47540 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47190 * 300.00094 * 4 2 1 36 36 H 0.96995 * 120.00171 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47398 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.47172 * 59.99811 * 13 2 1 39 39 H 0.97000 * 120.00044 * 0.02562 * 14 13 2 40 40 H 1.08002 * 120.00647 * 0.02562 * 18 17 15 41 41 H 1.08004 * 119.99335 * 180.27800 * 19 18 17 42 42 H 1.08004 * 126.25000 * 359.97438 * 22 21 20 43 43 H 1.07996 * 125.47104 * 179.68897 * 24 23 22 44 44 H 1.08001 * 119.99790 * 179.97438 * 26 20 19 45 45 H 1.08004 * 119.99695 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8528 9 14 1.2483 0.3991 -5.2572 10 1 0.4236 1.5660 -4.8530 11 1 2.4035 0.8650 -6.0655 12 1 0.4226 -0.5338 -6.0655 13 6 2.0401 -0.7212 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8771 -0.4915 3.6694 16 8 2.5761 -1.4800 3.7810 17 6 1.3846 0.2040 4.8746 18 6 1.7216 -0.2744 6.1444 19 6 1.2705 0.3725 7.2595 20 6 0.4675 1.5098 7.1314 21 6 -0.0193 2.2090 8.3364 22 6 -0.7981 3.3228 8.3681 23 7 -1.0133 3.6276 9.6555 24 6 -0.3949 2.7578 10.4052 25 8 0.2283 1.8687 9.6209 26 6 0.1266 1.9852 5.8616 27 6 0.5775 1.3384 4.7464 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6768 -1.7488 -1.2493 36 1 2.8609 -1.8826 -4.7337 37 1 3.1300 -0.7208 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 2.3425 -1.1525 6.2435 41 1 1.5346 0.0056 8.2404 42 1 -1.1764 3.8621 7.5122 43 1 -0.3861 2.7552 11.4851 44 1 -0.4941 2.8635 5.7625 45 1 0.3145 1.7059 3.7655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:10 Heat of formation + Delta-G solvation = -23.561714 kcal Electronic energy + Delta-G solvation = -26425.853688 eV Core-core repulsion = 22601.571683 eV Total energy + Delta-G solvation = -3824.282006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.28257 -41.39759 -39.72233 -38.53410 -35.82159 -35.35583 -34.18144 -33.50286 -32.22764 -30.04328 -29.04362 -27.94405 -27.68758 -25.63754 -24.61494 -24.31383 -22.82428 -22.58622 -21.42342 -20.13820 -19.19185 -18.54862 -18.34179 -17.60288 -17.30227 -16.97965 -16.47948 -16.45834 -15.91064 -15.86156 -15.19317 -15.12745 -14.95746 -14.70580 -14.60145 -14.40410 -14.13085 -14.02284 -13.92972 -13.63688 -13.30572 -12.88849 -12.68693 -12.58537 -12.45281 -12.32984 -12.24345 -12.14603 -11.93667 -11.63059 -11.53137 -11.27658 -10.99852 -10.91992 -10.81105 -10.51340 -10.19199 -10.13636 -9.15710 -8.13152 -6.20757 -0.75810 0.33098 0.66849 1.42684 1.43940 1.55433 1.62299 1.68401 1.93911 2.11930 2.45646 2.81211 3.21590 3.35033 3.50302 3.68289 3.77094 3.86898 3.97898 4.03327 4.08910 4.20859 4.23404 4.30874 4.55627 4.68602 4.72224 4.72517 4.76496 4.81906 4.94710 4.97605 5.10100 5.14424 5.17398 5.28227 5.30899 5.34700 5.36881 5.46199 5.52494 5.54950 5.58228 5.68840 5.81812 5.91279 6.31079 6.51719 6.66050 6.94941 7.15935 7.47044 8.99499 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.001986 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.155097 B =14098.387205 C =14895.151483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.700 5.700 15 C 0.548 3.452 16 O -0.586 6.586 17 C -0.138 4.138 18 C -0.066 4.066 19 C -0.111 4.111 20 C 0.006 3.994 21 C -0.028 4.028 22 C -0.014 4.014 23 N -0.523 5.523 24 C 0.192 3.808 25 O -0.209 6.209 26 C -0.095 4.095 27 C -0.072 4.072 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.072 0.928 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.259 0.741 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.143 0.857 42 H 0.210 0.790 43 H 0.295 0.705 44 H 0.170 0.830 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 11.905 27.684 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.353 5.353 15 C 0.337 3.663 16 O -0.468 6.468 17 C -0.141 4.141 18 C -0.085 4.085 19 C -0.129 4.129 20 C 0.005 3.995 21 C -0.080 4.080 22 C -0.153 4.153 23 N -0.251 5.251 24 C -0.032 4.032 25 O -0.095 6.095 26 C -0.112 4.112 27 C -0.090 4.090 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.227 0.773 43 H 0.310 0.690 44 H 0.187 0.813 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.157 11.586 27.864 31.260 hybrid contribution 0.500 -0.713 -1.447 1.689 sum -7.657 10.873 26.417 29.575 Atomic orbital electron populations 1.21719 0.93419 1.01082 1.01848 1.20720 0.96844 0.96377 0.92596 1.21721 0.99984 0.94516 1.01847 1.18983 0.94308 0.94231 0.92368 1.21637 1.30249 1.12052 0.90976 0.90714 1.25969 0.95753 0.95904 1.02799 1.70129 1.38871 1.25040 1.23980 0.85481 0.77994 0.78841 0.79222 1.17852 1.21205 1.21211 1.21278 0.97972 0.95500 0.83668 1.45872 1.52774 1.32009 1.04611 1.18702 0.79763 0.83635 0.84192 1.90764 1.40230 1.28294 1.87470 1.20053 1.02697 0.98654 0.92719 1.20970 0.97425 0.99215 0.90919 1.21053 0.97536 0.94954 0.99380 1.17991 0.97521 0.94624 0.89375 1.21481 1.04744 0.99220 0.82594 1.23824 0.99777 0.96004 0.95742 1.70414 1.23560 1.27965 1.03193 1.29263 0.90059 0.83404 1.00481 1.84496 1.59460 1.49156 1.16430 1.21053 1.00029 1.01024 0.89141 1.21241 0.94334 0.92702 1.00750 0.90935 0.92368 0.94442 0.94442 0.92368 0.90937 0.99581 0.99584 0.93246 0.93357 0.93355 0.74692 0.85136 0.83888 0.77335 0.69024 0.81258 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 2 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.12 -3.92 8.05 71.99 0.58 -3.34 16 4 C 0.04 1.93 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.88 7.65 25.60 0.20 -26.68 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 8 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 10 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.14 4.87 4.56 86.38 0.39 5.26 16 14 N -0.70 -18.61 4.91 -466.23 -2.29 -20.90 16 15 C 0.55 16.00 7.76 86.71 0.67 16.68 16 16 O -0.59 -22.44 16.33 -3.98 -0.06 -22.51 16 17 C -0.14 -2.99 5.88 -20.05 -0.12 -3.10 16 18 C -0.07 -1.39 9.53 22.26 0.21 -1.17 16 19 C -0.11 -1.88 9.67 22.26 0.22 -1.66 16 20 C 0.01 0.09 5.88 -20.05 -0.12 -0.03 16 21 C -0.03 -0.41 7.06 24.20 0.17 -0.24 16 22 C -0.01 -0.19 11.29 83.82 0.95 0.76 16 23 N -0.52 -7.77 11.27 -315.03 -3.55 -11.32 16 24 C 0.19 1.83 13.21 130.45 1.72 3.56 16 25 O -0.21 -2.89 10.58 -7.77 -0.08 -2.97 16 26 C -0.09 -1.09 9.51 22.26 0.21 -0.88 16 27 C -0.07 -1.02 9.48 22.26 0.21 -0.81 16 28 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 29 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 33 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.41 8.02 4.17 -92.71 -0.39 7.64 16 40 H 0.13 2.95 7.64 -2.91 -0.02 2.93 16 41 H 0.14 2.04 7.93 -2.91 -0.02 2.02 16 42 H 0.21 1.52 7.29 -2.91 -0.02 1.50 16 43 H 0.29 -0.47 8.06 -2.91 -0.02 -0.50 16 44 H 0.17 0.79 7.02 -2.91 -0.02 0.77 16 45 H 0.16 1.41 6.38 -2.91 -0.02 1.39 16 Total: -1.00 -76.64 373.14 3.40 -73.24 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.64 Total: 11.11 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 6.43 Total: -15.29 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -5.55 Total: -88.71 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.15 Total: -25.48 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -76.64 3.40 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.678 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds