Wall clock time and date at job start Tue Mar 31 2020 15:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 13 17 17 C 1.47533 * 119.99975 * 180.27938 * 15 14 13 18 18 C 1.36625 * 126.82635 * 179.71669 * 17 15 14 19 19 C 1.42197 * 103.78564 * 179.90803 * 18 17 15 20 20 C 1.48445 * 126.83623 * 180.12779 * 19 18 17 21 21 C 1.39319 * 120.12413 * 359.97006 * 20 19 18 22 22 C 1.38021 * 119.88076 * 179.70286 * 21 20 19 23 23 C 1.38319 * 120.12095 * 0.59555 * 22 21 20 24 24 C 1.38321 * 120.23723 * 359.68075 * 23 22 21 25 25 C 1.38024 * 120.12162 * 0.02562 * 24 23 22 26 26 N 1.30933 * 106.31568 * 0.35418 * 19 18 17 27 27 O 1.20870 * 111.80299 * 359.76826 * 26 19 18 28 28 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 29 29 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 30 30 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 33 33 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 34 34 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 36 36 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 40 40 H 1.07997 * 128.10370 * 359.97438 * 18 17 15 41 41 H 1.07997 * 120.05693 * 0.02562 * 21 20 19 42 42 H 1.07998 * 119.93976 * 180.32172 * 22 21 20 43 43 H 1.07998 * 119.88620 * 179.69651 * 23 22 21 44 44 H 1.08001 * 119.94425 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.06215 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5719 -1.4829 3.7809 17 6 1.3761 0.1976 4.8740 18 6 1.6093 -0.1521 6.1740 19 6 0.9115 0.8362 6.9212 20 6 0.8288 0.9406 8.3996 21 6 1.4779 0.0064 9.2040 22 6 1.4027 0.1118 10.5781 23 6 0.6744 1.1354 11.1569 24 6 0.0233 2.0623 10.3631 25 6 0.0968 1.9698 8.9879 26 7 0.3524 1.6329 6.0453 27 8 0.5980 1.2958 4.9108 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1300 -0.7208 -1.2496 35 1 1.6767 -1.7489 -1.2493 36 1 1.6673 -0.1927 -5.6868 37 1 3.1301 -0.7216 1.2490 38 1 1.6768 -1.7489 1.2492 39 1 0.9939 0.7579 2.3564 40 1 2.1889 -0.9837 6.5468 41 1 2.0431 -0.7957 8.7530 42 1 1.9098 -0.6088 11.2025 43 1 0.6141 1.2114 12.2326 44 1 -0.5437 2.8599 10.8201 45 1 -0.4117 2.6943 8.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359767785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:44 Heat of formation + Delta-G solvation = 37.316979 kcal Electronic energy + Delta-G solvation = -26433.847346 eV Core-core repulsion = 22612.205239 eV Total energy + Delta-G solvation = -3821.642107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.27260 -39.83005 -39.54276 -37.37060 -34.93185 -33.86354 -32.52359 -32.02774 -31.37219 -30.73134 -27.93158 -26.74232 -26.59588 -24.60855 -24.27852 -23.02140 -22.30740 -21.94325 -20.31596 -19.25001 -18.05958 -17.90190 -17.05387 -16.89834 -16.49133 -15.98421 -15.68324 -15.28173 -15.06618 -14.41164 -14.17195 -13.98379 -13.82489 -13.79005 -13.59263 -13.53351 -13.47191 -12.78222 -12.44538 -12.30887 -12.12042 -11.82686 -11.43771 -11.29897 -11.24482 -11.17144 -11.03807 -10.65428 -10.55578 -10.51036 -10.08307 -10.02389 -9.78103 -9.57238 -9.42979 -9.07105 -9.03277 -8.98009 -8.55564 -6.05998 -4.03684 0.34232 0.65050 0.92697 2.00864 2.37519 2.86140 3.09678 3.29933 3.38278 3.41171 3.41297 3.50582 4.05250 4.43619 4.48842 4.52934 4.60863 4.65357 4.77017 4.88201 5.00171 5.14842 5.25812 5.27074 5.36122 5.44348 5.51760 5.55697 5.57606 5.96759 6.00888 6.01842 6.02821 6.03853 6.08190 6.26017 6.26469 6.44805 6.55984 6.57134 6.83534 6.98689 7.01625 7.15030 7.28101 7.32017 7.72886 7.75815 7.92939 8.50475 8.97988 9.56266 11.06614 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037370 B = 0.001971 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.081840 B =14199.395133 C =14752.066020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.123 3.877 14 N -0.701 5.701 15 C 0.598 3.402 16 O -0.516 6.516 17 C -0.071 4.071 18 C -0.146 4.146 19 C 0.050 3.950 20 C -0.022 4.022 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.091 4.091 26 N -0.337 5.337 27 O 0.125 5.875 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.408 0.592 40 H 0.185 0.815 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 1.930 30.104 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.188 4.188 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.352 5.352 15 C 0.380 3.620 16 O -0.392 6.392 17 C -0.137 4.137 18 C -0.168 4.168 19 C -0.105 4.105 20 C -0.023 4.023 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.110 4.110 26 N -0.035 5.035 27 O 0.050 5.950 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.244 0.756 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.683 2.302 30.025 30.161 hybrid contribution 0.741 -1.093 -0.174 1.332 sum -0.942 1.209 29.851 29.891 Atomic orbital electron populations 1.21809 0.94610 1.01408 1.01045 1.20722 0.96001 0.96030 0.93660 1.21800 1.00549 0.95458 1.01043 1.19593 0.96341 0.95511 0.92491 1.21068 1.31932 1.13411 0.88579 0.90341 1.25005 0.95703 0.96756 0.95992 1.69899 1.45858 1.40524 0.97892 0.86856 0.81311 0.83899 0.77679 1.20381 1.21512 1.18983 1.21832 0.99355 0.96248 0.82494 1.46125 1.52067 1.31738 1.05256 1.16542 0.80812 0.83461 0.81171 1.90877 1.37783 1.25005 1.85555 1.24328 1.00064 0.91870 0.97427 1.22851 1.02206 1.01419 0.90369 1.21969 0.99427 0.94155 0.94983 1.17672 1.00350 0.97314 0.86946 1.21171 0.98419 0.98029 0.93660 1.21107 0.99479 0.98718 0.94391 1.21322 0.96639 0.94617 1.00198 1.21137 0.99926 0.99482 0.93253 1.21254 0.97444 0.97116 0.95201 1.74001 1.18865 1.20984 0.89651 1.84965 1.50906 1.35736 1.23423 0.94868 0.90664 0.93272 0.93261 0.90674 0.94855 0.96264 0.96713 0.92771 0.91048 0.91068 0.75563 0.79766 0.85243 0.85280 0.85615 0.85413 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.06 -1.11 0.54 -154.50 -0.08 -1.19 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.39 8.20 -34.44 -0.28 -13.67 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.87 21.10 27.47 -169.99 -4.67 16.44 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.12 1.90 4.56 -4.04 -0.02 1.88 16 14 N -0.70 -9.24 4.96 -61.35 -0.30 -9.55 16 15 C 0.60 8.18 7.82 -12.47 -0.10 8.08 16 16 O -0.52 -8.49 16.91 5.29 0.09 -8.40 16 17 C -0.07 -0.85 7.28 -36.38 -0.26 -1.11 16 18 C -0.15 -1.56 10.30 -38.65 -0.40 -1.96 16 19 C 0.05 0.55 7.05 -82.53 -0.58 -0.03 16 20 C -0.02 -0.21 5.88 -104.88 -0.62 -0.83 16 21 C -0.09 -0.71 9.60 -39.26 -0.38 -1.09 16 22 C -0.12 -0.74 10.03 -39.63 -0.40 -1.14 16 23 C -0.11 -0.66 10.04 -39.52 -0.40 -1.05 16 24 C -0.12 -0.82 10.03 -39.63 -0.40 -1.21 16 25 C -0.09 -0.79 9.70 -39.26 -0.38 -1.17 16 26 N -0.34 -4.11 11.78 33.39 0.39 -3.71 16 27 O 0.13 1.49 11.02 15.57 0.17 1.66 16 28 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 29 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 33 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.41 4.73 5.98 -40.82 -0.24 4.49 16 40 H 0.19 1.58 7.57 -52.49 -0.40 1.18 16 41 H 0.13 0.78 7.22 -52.49 -0.38 0.40 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.13 1.12 7.89 -52.49 -0.41 0.70 16 LS Contribution 373.93 15.07 5.63 5.63 Total: -1.00 -30.92 373.93 -7.83 -38.75 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.04 Total: 1.87 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.88 Total: -16.62 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.86 Total: -39.33 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.26 Total: -6.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.92 -7.83 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.067 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds