Wall clock time and date at job start Tue Mar 31 2020 15:45:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.53000 * 109.47162 * 2 1
4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3
5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1
6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2
7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2
8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4
9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4
10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5
11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5
12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5
13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3
14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1
15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2
16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 13
17 17 C 1.47533 * 119.99975 * 180.27938 * 15 14 13
18 18 C 1.36625 * 126.82635 * 179.71669 * 17 15 14
19 19 C 1.42197 * 103.78564 * 179.90803 * 18 17 15
20 20 C 1.48445 * 126.83623 * 180.12779 * 19 18 17
21 21 C 1.39319 * 120.12413 * 359.97006 * 20 19 18
22 22 C 1.38021 * 119.88076 * 179.70286 * 21 20 19
23 23 C 1.38319 * 120.12095 * 0.59555 * 22 21 20
24 24 C 1.38321 * 120.23723 * 359.68075 * 23 22 21
25 25 C 1.38024 * 120.12162 * 0.02562 * 24 23 22
26 26 N 1.30933 * 106.31568 * 0.35418 * 19 18 17
27 27 O 1.20870 * 111.80299 * 359.76826 * 26 19 18
28 28 H 1.09003 * 109.46863 * 299.99777 * 1 2 3
29 29 H 1.09001 * 109.47172 * 59.99859 * 1 2 3
30 30 H 1.09000 * 109.46753 * 180.02562 * 1 2 3
31 31 H 1.08990 * 109.47258 * 180.02562 * 3 2 1
32 32 H 1.09001 * 109.46739 * 300.00411 * 3 2 1
33 33 H 1.08999 * 109.47407 * 59.99680 * 3 2 1
34 34 H 1.08990 * 109.47021 * 179.97438 * 4 2 1
35 35 H 1.09002 * 109.46620 * 300.00017 * 4 2 1
36 36 H 0.96996 * 120.00642 * 180.02562 * 8 7 5
37 37 H 1.09004 * 109.47066 * 179.97438 * 13 2 1
38 38 H 1.08994 * 109.46974 * 60.00060 * 13 2 1
39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 2
40 40 H 1.07997 * 128.10370 * 359.97438 * 18 17 15
41 41 H 1.07997 * 120.05693 * 0.02562 * 21 20 19
42 42 H 1.07998 * 119.93976 * 180.32172 * 22 21 20
43 43 H 1.07998 * 119.88620 * 179.69651 * 23 22 21
44 44 H 1.08001 * 119.94425 * 180.02562 * 24 23 22
45 45 H 1.08000 * 120.06215 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7212 -1.2493
5 6 1.5376 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3806
7 6 1.8711 -0.4816 -3.7320
8 7 1.4331 0.1387 -4.8058
9 14 2.9451 -2.0003 -3.9035
10 1 2.0866 -3.2111 -3.9494
11 1 3.7374 -1.9074 -5.1560
12 1 3.8651 -2.0897 -2.7412
13 6 2.0401 -0.7213 1.2492
14 7 1.5518 -0.0306 2.4454
15 6 1.8728 -0.4943 3.6694
16 8 2.5719 -1.4829 3.7809
17 6 1.3761 0.1976 4.8740
18 6 1.6093 -0.1521 6.1740
19 6 0.9115 0.8362 6.9212
20 6 0.8288 0.9406 8.3996
21 6 1.4779 0.0064 9.2040
22 6 1.4027 0.1118 10.5781
23 6 0.6744 1.1354 11.1569
24 6 0.0233 2.0623 10.3631
25 6 0.0968 1.9698 8.9879
26 7 0.3524 1.6329 6.0453
27 8 0.5980 1.2958 4.9108
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6768 1.9564 0.8899
34 1 3.1300 -0.7208 -1.2496
35 1 1.6767 -1.7489 -1.2493
36 1 1.6673 -0.1927 -5.6868
37 1 3.1301 -0.7216 1.2490
38 1 1.6768 -1.7489 1.2492
39 1 0.9939 0.7579 2.3564
40 1 2.1889 -0.9837 6.5468
41 1 2.0431 -0.7957 8.7530
42 1 1.9098 -0.6088 11.2025
43 1 0.6141 1.2114 12.2326
44 1 -0.5437 2.8599 10.8201
45 1 -0.4117 2.6943 8.3691
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359767785.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:45:44
Heat of formation + Delta-G solvation = 37.316979 kcal
Electronic energy + Delta-G solvation = -26433.847346 eV
Core-core repulsion = 22612.205239 eV
Total energy + Delta-G solvation = -3821.642107 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 328.157 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-45.27260 -39.83005 -39.54276 -37.37060 -34.93185 -33.86354 -32.52359 -32.02774
-31.37219 -30.73134 -27.93158 -26.74232 -26.59588 -24.60855 -24.27852 -23.02140
-22.30740 -21.94325 -20.31596 -19.25001 -18.05958 -17.90190 -17.05387 -16.89834
-16.49133 -15.98421 -15.68324 -15.28173 -15.06618 -14.41164 -14.17195 -13.98379
-13.82489 -13.79005 -13.59263 -13.53351 -13.47191 -12.78222 -12.44538 -12.30887
-12.12042 -11.82686 -11.43771 -11.29897 -11.24482 -11.17144 -11.03807 -10.65428
-10.55578 -10.51036 -10.08307 -10.02389 -9.78103 -9.57238 -9.42979 -9.07105
-9.03277 -8.98009 -8.55564 -6.05998 -4.03684 0.34232 0.65050 0.92697
2.00864 2.37519 2.86140 3.09678 3.29933 3.38278 3.41171 3.41297
3.50582 4.05250 4.43619 4.48842 4.52934 4.60863 4.65357 4.77017
4.88201 5.00171 5.14842 5.25812 5.27074 5.36122 5.44348 5.51760
5.55697 5.57606 5.96759 6.00888 6.01842 6.02821 6.03853 6.08190
6.26017 6.26469 6.44805 6.55984 6.57134 6.83534 6.98689 7.01625
7.15030 7.28101 7.32017 7.72886 7.75815 7.92939 8.50475 8.97988
9.56266 11.06614
Molecular weight = 328.16amu
Principal moments of inertia in cm(-1)
A = 0.037370 B = 0.001971 C = 0.001898
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.081840 B =14199.395133 C =14752.066020
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.064 4.064
3 C -0.131 4.131
4 C -0.002 4.002
5 C -0.512 4.512
6 H 0.079 0.921
7 C 0.067 3.933
8 N -0.903 5.903
9 Si 0.875 3.125
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.265 1.265
13 C 0.123 3.877
14 N -0.701 5.701
15 C 0.598 3.402
16 O -0.516 6.516
17 C -0.071 4.071
18 C -0.146 4.146
19 C 0.050 3.950
20 C -0.022 4.022
21 C -0.093 4.093
22 C -0.119 4.119
23 C -0.109 4.109
24 C -0.120 4.120
25 C -0.091 4.091
26 N -0.337 5.337
27 O 0.125 5.875
28 H 0.032 0.968
29 H 0.074 0.926
30 H 0.048 0.952
31 H 0.048 0.952
32 H 0.074 0.926
33 H 0.032 0.968
34 H 0.019 0.981
35 H 0.015 0.985
36 H 0.262 0.738
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.408 0.592
40 H 0.185 0.815
41 H 0.130 0.870
42 H 0.129 0.871
43 H 0.126 0.874
44 H 0.128 0.872
45 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.425 1.930 30.104 30.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.064 4.064
3 C -0.188 4.188
4 C -0.039 4.039
5 C -0.550 4.550
6 H 0.097 0.903
7 C -0.135 4.135
8 N -0.542 5.542
9 Si 0.703 3.297
10 H -0.204 1.204
11 H -0.215 1.215
12 H -0.190 1.190
13 C 0.001 3.999
14 N -0.352 5.352
15 C 0.380 3.620
16 O -0.392 6.392
17 C -0.137 4.137
18 C -0.168 4.168
19 C -0.105 4.105
20 C -0.023 4.023
21 C -0.113 4.113
22 C -0.137 4.137
23 C -0.128 4.128
24 C -0.138 4.138
25 C -0.110 4.110
26 N -0.035 5.035
27 O 0.050 5.950
28 H 0.051 0.949
29 H 0.093 0.907
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.093 0.907
33 H 0.051 0.949
34 H 0.037 0.963
35 H 0.033 0.967
36 H 0.072 0.928
37 H 0.090 0.910
38 H 0.089 0.911
39 H 0.244 0.756
40 H 0.202 0.798
41 H 0.148 0.852
42 H 0.147 0.853
43 H 0.144 0.856
44 H 0.146 0.854
45 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -1.683 2.302 30.025 30.161
hybrid contribution 0.741 -1.093 -0.174 1.332
sum -0.942 1.209 29.851 29.891
Atomic orbital electron populations
1.21809 0.94610 1.01408 1.01045 1.20722 0.96001 0.96030 0.93660
1.21800 1.00549 0.95458 1.01043 1.19593 0.96341 0.95511 0.92491
1.21068 1.31932 1.13411 0.88579 0.90341 1.25005 0.95703 0.96756
0.95992 1.69899 1.45858 1.40524 0.97892 0.86856 0.81311 0.83899
0.77679 1.20381 1.21512 1.18983 1.21832 0.99355 0.96248 0.82494
1.46125 1.52067 1.31738 1.05256 1.16542 0.80812 0.83461 0.81171
1.90877 1.37783 1.25005 1.85555 1.24328 1.00064 0.91870 0.97427
1.22851 1.02206 1.01419 0.90369 1.21969 0.99427 0.94155 0.94983
1.17672 1.00350 0.97314 0.86946 1.21171 0.98419 0.98029 0.93660
1.21107 0.99479 0.98718 0.94391 1.21322 0.96639 0.94617 1.00198
1.21137 0.99926 0.99482 0.93253 1.21254 0.97444 0.97116 0.95201
1.74001 1.18865 1.20984 0.89651 1.84965 1.50906 1.35736 1.23423
0.94868 0.90664 0.93272 0.93261 0.90674 0.94855 0.96264 0.96713
0.92771 0.91048 0.91068 0.75563 0.79766 0.85243 0.85280 0.85615
0.85413 0.85250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16
2 C -0.06 -1.11 0.54 -154.50 -0.08 -1.19 16
3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16
4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16
5 C -0.51 -13.39 8.20 -34.44 -0.28 -13.67 16
6 H 0.08 2.18 5.92 -52.49 -0.31 1.86 16
7 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16
8 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16
9 Si 0.87 21.10 27.47 -169.99 -4.67 16.44 16
10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16
13 C 0.12 1.90 4.56 -4.04 -0.02 1.88 16
14 N -0.70 -9.24 4.96 -61.35 -0.30 -9.55 16
15 C 0.60 8.18 7.82 -12.47 -0.10 8.08 16
16 O -0.52 -8.49 16.91 5.29 0.09 -8.40 16
17 C -0.07 -0.85 7.28 -36.38 -0.26 -1.11 16
18 C -0.15 -1.56 10.30 -38.65 -0.40 -1.96 16
19 C 0.05 0.55 7.05 -82.53 -0.58 -0.03 16
20 C -0.02 -0.21 5.88 -104.88 -0.62 -0.83 16
21 C -0.09 -0.71 9.60 -39.26 -0.38 -1.09 16
22 C -0.12 -0.74 10.03 -39.63 -0.40 -1.14 16
23 C -0.11 -0.66 10.04 -39.52 -0.40 -1.05 16
24 C -0.12 -0.82 10.03 -39.63 -0.40 -1.21 16
25 C -0.09 -0.79 9.70 -39.26 -0.38 -1.17 16
26 N -0.34 -4.11 11.78 33.39 0.39 -3.71 16
27 O 0.13 1.49 11.02 15.57 0.17 1.66 16
28 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16
29 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16
30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16
33 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16
34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16
35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16
36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
39 H 0.41 4.73 5.98 -40.82 -0.24 4.49 16
40 H 0.19 1.58 7.57 -52.49 -0.40 1.18 16
41 H 0.13 0.78 7.22 -52.49 -0.38 0.40 16
42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16
43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16
44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16
45 H 0.13 1.12 7.89 -52.49 -0.41 0.70 16
LS Contribution 373.93 15.07 5.63 5.63
Total: -1.00 -30.92 373.93 -7.83 -38.75
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: -6.04 Total: 1.87 kcal
Atomic # 6 Polarization: -12.75 SS G_CDS: -3.88 Total: -16.62 kcal
Atomic # 7 Polarization: -40.20 SS G_CDS: 0.86 Total: -39.33 kcal
Atomic # 8 Polarization: -7.00 SS G_CDS: 0.26 Total: -6.74 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.44 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -30.92 -7.83 -38.75 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359767785.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.067 kcal
(2) G-P(sol) polarization free energy of solvation -30.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds