Wall clock time and date at job start Tue Mar 31 2020 15:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21583 * 119.99943 * 0.28074 * 15 14 13 17 17 C 1.47533 * 119.99975 * 180.27938 * 15 14 13 18 18 C 1.36625 * 126.82635 * 179.71669 * 17 15 14 19 19 C 1.42197 * 103.78564 * 179.90803 * 18 17 15 20 20 C 1.48445 * 126.83623 * 180.12779 * 19 18 17 21 21 C 1.39319 * 120.12413 * 359.97006 * 20 19 18 22 22 C 1.38021 * 119.88076 * 179.70286 * 21 20 19 23 23 C 1.38319 * 120.12095 * 0.59555 * 22 21 20 24 24 C 1.38321 * 120.23723 * 359.68075 * 23 22 21 25 25 C 1.38024 * 120.12162 * 0.02562 * 24 23 22 26 26 N 1.30933 * 106.31568 * 0.35418 * 19 18 17 27 27 O 1.20870 * 111.80299 * 359.76826 * 26 19 18 28 28 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 29 29 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 30 30 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 33 33 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 34 34 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 36 36 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 40 40 H 1.07997 * 128.10370 * 359.97438 * 18 17 15 41 41 H 1.07997 * 120.05693 * 0.02562 * 21 20 19 42 42 H 1.07998 * 119.93976 * 180.32172 * 22 21 20 43 43 H 1.07998 * 119.88620 * 179.69651 * 23 22 21 44 44 H 1.08001 * 119.94425 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.06215 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5719 -1.4829 3.7809 17 6 1.3761 0.1976 4.8740 18 6 1.6093 -0.1521 6.1740 19 6 0.9115 0.8362 6.9212 20 6 0.8288 0.9406 8.3996 21 6 1.4779 0.0064 9.2040 22 6 1.4027 0.1118 10.5781 23 6 0.6744 1.1354 11.1569 24 6 0.0233 2.0623 10.3631 25 6 0.0968 1.9698 8.9879 26 7 0.3524 1.6329 6.0453 27 8 0.5980 1.2958 4.9108 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 3.1300 -0.7208 -1.2496 35 1 1.6767 -1.7489 -1.2493 36 1 1.6673 -0.1927 -5.6868 37 1 3.1301 -0.7216 1.2490 38 1 1.6768 -1.7489 1.2492 39 1 0.9939 0.7579 2.3564 40 1 2.1889 -0.9837 6.5468 41 1 2.0431 -0.7957 8.7530 42 1 1.9098 -0.6088 11.2025 43 1 0.6141 1.2114 12.2326 44 1 -0.5437 2.8599 10.8201 45 1 -0.4117 2.6943 8.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:42 Heat of formation + Delta-G solvation = 19.869423 kcal Electronic energy + Delta-G solvation = -26434.603929 eV Core-core repulsion = 22612.205239 eV Total energy + Delta-G solvation = -3822.398690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -46.14088 -40.98875 -40.07423 -38.76839 -35.75986 -35.23823 -34.11599 -33.20814 -31.90485 -31.36800 -29.75630 -27.98008 -27.97892 -25.49512 -25.23390 -24.22956 -23.17424 -22.94012 -21.25079 -20.28502 -19.24554 -18.95275 -18.86667 -17.61937 -17.37496 -17.14784 -16.45312 -16.38431 -16.18267 -15.68828 -15.33831 -15.20785 -15.09372 -14.77635 -14.43648 -14.28293 -14.20898 -14.15863 -14.05732 -13.90250 -12.96551 -12.92788 -12.81062 -12.61743 -12.31940 -12.28264 -12.15738 -11.97479 -11.97069 -11.78386 -11.62170 -11.50283 -11.15222 -11.00311 -10.90332 -10.68313 -10.21520 -9.94496 -9.59533 -8.20028 -6.20438 -0.44154 -0.11698 0.41424 1.28039 1.38592 1.41000 1.41769 1.51000 1.82985 2.09100 2.41302 2.76150 2.86509 3.15555 3.22427 3.73883 3.84604 3.90965 4.03068 4.05090 4.06077 4.07455 4.16186 4.29535 4.48783 4.59769 4.62938 4.68801 4.71276 4.76488 4.93715 4.95726 4.99307 5.07261 5.11480 5.21102 5.33031 5.41353 5.43940 5.45486 5.47139 5.53604 5.57447 5.70129 5.78156 5.96544 6.22149 6.40292 6.81326 6.86986 6.91854 7.42218 8.95547 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037370 B = 0.001971 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.081840 B =14199.395133 C =14752.066020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.247 1.247 13 C 0.135 3.865 14 N -0.694 5.694 15 C 0.607 3.393 16 O -0.544 6.544 17 C -0.082 4.082 18 C -0.136 4.136 19 C 0.052 3.948 20 C -0.050 4.050 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.108 4.108 26 N -0.355 5.355 27 O 0.122 5.878 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.416 0.584 40 H 0.205 0.795 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 0.897 33.697 33.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.171 1.171 13 C 0.012 3.988 14 N -0.345 5.345 15 C 0.390 3.610 16 O -0.422 6.422 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.103 4.103 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.127 4.127 26 N -0.054 5.054 27 O 0.047 5.953 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.222 0.778 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.165 0.835 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.984 1.285 33.636 33.675 hybrid contribution 0.455 -0.683 -1.135 1.401 sum -0.529 0.602 32.501 32.511 Atomic orbital electron populations 1.21746 0.94039 1.01498 1.01210 1.20578 0.96429 0.96125 0.92830 1.21739 1.00530 0.94993 1.01213 1.19566 0.96201 0.95591 0.92739 1.21388 1.30201 1.12265 0.90197 0.93162 1.25872 0.97535 1.00031 0.95887 1.70050 1.48215 1.42731 0.98437 0.85868 0.79834 0.80212 0.77983 1.19747 1.21778 1.17084 1.21518 0.99189 0.95960 0.82141 1.45941 1.52071 1.31847 1.04641 1.16551 0.80096 0.82948 0.81391 1.90864 1.39068 1.26266 1.86012 1.24035 1.01102 0.92471 0.97111 1.23148 1.01434 1.01454 0.89784 1.22301 0.98613 0.93623 0.95804 1.17848 1.02174 0.98768 0.86290 1.21422 0.98152 0.97892 0.94344 1.21479 0.99126 0.99146 0.94083 1.21720 0.95329 0.93735 1.01621 1.21414 1.00052 1.00284 0.92539 1.21339 0.97967 0.97175 0.96223 1.73984 1.19757 1.21741 0.89960 1.84949 1.51128 1.35770 1.23453 0.91578 0.93621 0.93213 0.93240 0.93623 0.91562 0.96257 0.96412 0.92947 0.91154 0.91106 0.74536 0.77814 0.83906 0.82698 0.82875 0.83539 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.05 71.99 0.58 -3.55 16 2 C -0.06 -2.00 0.54 -52.18 -0.03 -2.02 16 3 C -0.13 -4.13 8.05 71.98 0.58 -3.55 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 5 C -0.50 -26.80 8.20 25.60 0.21 -26.59 16 6 H 0.05 2.91 5.92 -2.91 -0.02 2.89 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -58.47 13.96 21.45 0.30 -58.18 16 9 Si 0.94 43.60 27.47 68.60 1.88 45.48 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 13 C 0.13 3.90 4.56 86.38 0.39 4.30 16 14 N -0.69 -16.89 4.96 -466.29 -2.31 -19.20 16 15 C 0.61 15.56 7.82 86.69 0.68 16.24 16 16 O -0.54 -17.01 16.91 -3.98 -0.07 -17.07 16 17 C -0.08 -1.83 7.28 24.35 0.18 -1.66 16 18 C -0.14 -2.70 10.30 22.88 0.24 -2.46 16 19 C 0.05 1.10 7.05 42.98 0.30 1.40 16 20 C -0.05 -0.89 5.88 -20.03 -0.12 -1.01 16 21 C -0.10 -1.30 9.60 22.48 0.22 -1.08 16 22 C -0.12 -1.14 10.03 22.24 0.22 -0.92 16 23 C -0.11 -0.95 10.04 22.31 0.22 -0.72 16 24 C -0.13 -1.46 10.03 22.24 0.22 -1.23 16 25 C -0.11 -1.80 9.70 22.48 0.22 -1.58 16 26 N -0.35 -8.45 11.78 -48.92 -0.58 -9.03 16 27 O 0.12 2.78 11.02 65.89 0.73 3.50 16 28 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 29 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 33 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 34 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 35 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.42 8.69 5.98 -92.71 -0.55 8.13 16 40 H 0.20 3.05 7.57 -2.91 -0.02 3.02 16 41 H 0.14 1.37 7.22 -2.91 -0.02 1.35 16 42 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 43 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 44 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.12 2.11 7.89 -2.91 -0.02 2.09 16 Total: -1.00 -68.34 373.93 5.03 -63.30 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.41 Total: 15.06 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.67 Total: -23.87 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.59 Total: -86.40 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.66 Total: -13.57 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -68.34 5.03 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.171 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds