Wall clock time and date at job start Tue Mar 31 2020 15:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46735 * 2 1 4 4 C 1.50700 * 109.47322 * 119.99531 * 2 1 3 5 5 C 1.34500 * 126.35518 * 119.99943 * 4 2 1 6 6 N 1.34204 * 107.84886 * 180.02562 * 5 4 2 7 7 C 1.31261 * 108.63779 * 0.02562 * 6 5 4 8 8 C 1.47732 * 125.73105 * 179.97438 * 7 6 5 9 9 C 1.39654 * 120.07297 * 0.02562 * 8 7 6 10 10 C 1.37774 * 119.92145 * 179.97438 * 9 8 7 11 11 C 1.39038 * 120.07961 * 359.97438 * 10 9 8 12 12 N 1.39722 * 119.92810 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99995 * 144.87564 * 12 11 10 14 14 O 1.21284 * 119.99710 * 4.59770 * 13 12 11 15 15 C 1.50696 * 120.00174 * 184.59797 * 13 12 11 16 16 C 1.52994 * 109.47308 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47308 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99912 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00304 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99949 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00307 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46887 * 119.99857 * 21 19 17 24 24 H 1.48497 * 109.47061 * 240.00134 * 21 19 17 25 25 C 1.39039 * 120.14566 * 0.04362 * 11 10 9 26 26 C 1.37780 * 120.07409 * 359.97438 * 25 11 10 27 27 O 1.34446 * 108.53668 * 0.22515 * 7 6 5 28 28 H 1.09007 * 109.47365 * 299.99691 * 1 2 3 29 29 H 1.08996 * 109.47574 * 60.00382 * 1 2 3 30 30 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47296 * 240.00419 * 2 1 3 32 32 H 1.08997 * 109.46637 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46777 * 300.00106 * 3 2 1 34 34 H 1.08999 * 109.47099 * 59.99773 * 3 2 1 35 35 H 1.08003 * 126.07927 * 0.04505 * 5 4 2 36 36 H 1.07993 * 120.04037 * 0.25152 * 9 8 7 37 37 H 1.08003 * 119.96116 * 180.02562 * 10 9 8 38 38 H 0.97007 * 119.99925 * 324.87460 * 12 11 10 39 39 H 1.09003 * 109.47131 * 300.00214 * 15 13 12 40 40 H 1.09002 * 109.46760 * 59.99682 * 15 13 12 41 41 H 1.09003 * 109.47377 * 300.00281 * 16 15 13 42 42 H 1.09002 * 109.47292 * 60.00225 * 16 15 13 43 43 H 0.96996 * 120.00261 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.96475 * 179.97438 * 25 11 10 45 45 H 1.07997 * 120.03528 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8088 -1.8083 1.2562 6 7 3.0318 -2.1244 2.5412 7 6 2.4133 -1.2512 3.3015 8 6 2.4072 -1.2449 4.7788 9 6 3.1027 -2.2282 5.4857 10 6 3.0954 -2.2189 6.8634 11 6 2.3971 -1.2319 7.5499 12 7 2.3922 -1.2253 8.9471 13 6 2.3868 -0.0548 9.6154 14 8 2.3020 0.9907 9.0066 15 6 2.4862 -0.0453 11.1191 16 6 2.4589 1.3991 11.6228 17 6 2.5589 1.4087 13.1264 18 1 2.6348 0.4777 13.6685 19 6 2.5535 2.6061 13.8102 20 7 2.4616 3.7398 13.1500 21 14 2.6767 2.6179 15.6740 22 1 2.7697 1.2223 16.1728 23 1 3.8884 3.3718 16.0851 24 1 1.4708 3.2692 16.2457 25 6 1.7033 -0.2517 6.8492 26 6 1.7062 -0.2553 5.4714 27 8 1.7817 -0.3669 2.5099 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1861 -2.3407 0.3956 36 1 3.6493 -2.9923 4.9531 37 1 3.6334 -2.9788 7.4107 38 1 2.3927 -2.0630 9.4362 39 1 1.6449 -0.5941 11.5423 40 1 3.4194 -0.5187 11.4245 41 1 3.3005 1.9476 11.1996 42 1 1.5259 1.8729 11.3174 43 1 2.4574 4.5821 13.6310 44 1 1.1616 0.5133 7.3854 45 1 1.1668 0.5062 4.9278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360260899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:02 Heat of formation + Delta-G solvation = -6.995066 kcal Electronic energy + Delta-G solvation = -25940.146110 eV Core-core repulsion = 22116.582489 eV Total energy + Delta-G solvation = -3823.563622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.48141 -40.36602 -38.42682 -36.13367 -34.98401 -34.69150 -33.56790 -31.53537 -31.11507 -30.64493 -28.30893 -27.64128 -25.92178 -24.08384 -23.53612 -22.26487 -22.22829 -21.17890 -20.55725 -19.76780 -17.97284 -17.45773 -17.01770 -16.82849 -15.93829 -15.85159 -15.60644 -15.20744 -14.67626 -14.51837 -14.46498 -14.15896 -13.67494 -13.65261 -13.53531 -13.37595 -13.09803 -12.66229 -12.53116 -12.32681 -12.21288 -12.08691 -11.72890 -11.58099 -11.51060 -11.37985 -11.23424 -10.99410 -10.67432 -10.63140 -10.45873 -10.05976 -9.76550 -9.34767 -9.16114 -9.13419 -9.01590 -8.38122 -7.87289 -6.01547 -4.06352 0.49904 1.30722 1.60351 2.34205 2.54859 2.99878 3.22745 3.29614 3.37261 3.40216 3.75821 3.76163 4.19387 4.41593 4.43122 4.58567 4.67069 4.82518 4.87114 4.91280 5.16582 5.19460 5.20259 5.27331 5.33807 5.34069 5.35278 5.45039 5.50037 5.54548 5.70961 5.74786 5.83083 5.92573 6.00178 6.07770 6.08256 6.17395 6.28129 6.32928 6.45751 6.76193 6.93505 7.51686 7.55785 7.67850 7.76473 7.99442 8.29325 8.48694 9.01680 9.57765 11.09359 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.001855 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.734895 B =15088.492282 C =15931.834571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.151 4.151 4 C -0.044 4.044 5 C -0.036 4.036 6 N -0.479 5.479 7 C 0.246 3.754 8 C -0.054 4.054 9 C -0.048 4.048 10 C -0.156 4.156 11 C 0.182 3.818 12 N -0.686 5.686 13 C 0.509 3.491 14 O -0.510 6.510 15 C -0.129 4.129 16 C 0.036 3.964 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.127 4.127 26 C -0.065 4.065 27 O -0.191 6.191 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.183 0.817 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.411 0.589 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.150 0.850 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -13.072 -25.834 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 C -0.208 4.208 4 C -0.097 4.097 5 C -0.176 4.176 6 N -0.207 5.207 7 C 0.043 3.957 8 C -0.056 4.056 9 C -0.068 4.068 10 C -0.177 4.177 11 C 0.085 3.915 12 N -0.332 5.332 13 C 0.299 3.701 14 O -0.382 6.382 15 C -0.169 4.169 16 C -0.002 4.002 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.147 4.147 26 C -0.086 4.086 27 O -0.078 6.078 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.200 0.800 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.167 0.833 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.768 -12.537 -25.910 28.838 hybrid contribution -0.204 0.161 0.878 0.916 sum -1.972 -12.376 -25.033 27.994 Atomic orbital electron populations 1.21893 0.93418 1.02590 1.02869 1.19745 0.96572 0.96060 0.90170 1.21897 1.01622 0.94421 1.02886 1.23494 1.03277 0.99216 0.83740 1.23054 1.02072 0.97403 0.95109 1.70655 1.22321 1.25806 1.01915 1.23809 0.93004 0.85902 0.92951 1.17203 1.05059 0.99756 0.83569 1.20848 0.96299 0.96696 0.92974 1.20847 1.01716 1.01259 0.93853 1.18097 0.93984 0.95661 0.83742 1.44000 1.74388 1.10751 1.04018 1.21918 0.73969 0.82198 0.91974 1.90678 1.45987 1.31647 1.69923 1.21927 1.02949 1.05124 0.86856 1.18932 0.98769 0.87295 0.95197 1.21226 1.51199 0.92569 0.91673 0.92454 1.25031 0.95218 0.95663 0.98491 1.70001 1.49899 0.97409 1.35413 0.86517 0.77655 0.78063 0.85619 1.19724 1.20995 1.20991 1.21308 0.99896 1.00196 0.93321 1.21106 0.96923 0.96556 0.93975 1.84445 1.58675 1.48366 1.16332 0.91929 0.91398 0.92161 0.87928 0.92102 0.91399 0.91891 0.80016 0.84335 0.84760 0.75251 0.89683 0.89673 0.95684 0.95679 0.92932 0.83251 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 2 C -0.01 -0.04 3.33 -91.77 -0.31 -0.35 16 3 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 4 C -0.04 -0.43 5.89 -35.63 -0.21 -0.64 16 5 C -0.04 -0.37 11.77 -17.84 -0.21 -0.58 16 6 N -0.48 -6.17 10.91 -11.74 -0.13 -6.30 16 7 C 0.25 3.23 7.89 -13.92 -0.11 3.12 16 8 C -0.05 -0.69 5.87 -104.96 -0.62 -1.31 16 9 C -0.05 -0.56 9.68 -39.22 -0.38 -0.94 16 10 C -0.16 -1.74 9.95 -39.45 -0.39 -2.14 16 11 C 0.18 2.46 6.30 -83.67 -0.53 1.93 16 12 N -0.69 -9.12 5.32 -9.83 -0.05 -9.17 16 13 C 0.51 9.11 7.67 -10.99 -0.08 9.02 16 14 O -0.51 -11.13 13.40 5.55 0.07 -11.06 16 15 C -0.13 -2.43 5.64 -27.89 -0.16 -2.58 16 16 C 0.04 0.92 4.26 -27.89 -0.12 0.80 16 17 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.13 -1.86 8.67 -39.45 -0.34 -2.20 16 26 C -0.07 -0.86 9.71 -39.22 -0.38 -1.24 16 27 O -0.19 -2.35 10.52 3.89 0.04 -2.31 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.44 8.11 -51.93 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.14 1.44 7.83 -52.49 -0.41 1.03 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.41 3.92 8.82 -40.82 -0.36 3.56 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.15 2.46 6.21 -52.49 -0.33 2.14 16 45 H 0.13 1.55 7.89 -52.49 -0.41 1.14 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -34.47 386.22 -8.64 -43.11 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.54 Total: 1.42 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.56 Total: -11.60 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.56 Total: -41.67 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.12 Total: -13.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.47 -8.64 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360260899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.114 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds