Wall clock time and date at job start Tue Mar 31 2020 15:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46735 * 2 1 4 4 C 1.50700 * 109.47322 * 119.99531 * 2 1 3 5 5 C 1.34500 * 126.35518 * 119.99943 * 4 2 1 6 6 N 1.34204 * 107.84886 * 180.02562 * 5 4 2 7 7 C 1.31261 * 108.63779 * 0.02562 * 6 5 4 8 8 C 1.47732 * 125.73105 * 179.97438 * 7 6 5 9 9 C 1.39654 * 120.07297 * 0.02562 * 8 7 6 10 10 C 1.37774 * 119.92145 * 179.97438 * 9 8 7 11 11 C 1.39038 * 120.07961 * 359.97438 * 10 9 8 12 12 N 1.39722 * 119.92810 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99995 * 144.87564 * 12 11 10 14 14 O 1.21284 * 119.99710 * 4.59770 * 13 12 11 15 15 C 1.50696 * 120.00174 * 184.59797 * 13 12 11 16 16 C 1.52994 * 109.47308 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47308 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99912 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00304 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99949 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00307 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46887 * 119.99857 * 21 19 17 24 24 H 1.48497 * 109.47061 * 240.00134 * 21 19 17 25 25 C 1.39039 * 120.14566 * 0.04362 * 11 10 9 26 26 C 1.37780 * 120.07409 * 359.97438 * 25 11 10 27 27 O 1.34446 * 108.53668 * 0.22515 * 7 6 5 28 28 H 1.09007 * 109.47365 * 299.99691 * 1 2 3 29 29 H 1.08996 * 109.47574 * 60.00382 * 1 2 3 30 30 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47296 * 240.00419 * 2 1 3 32 32 H 1.08997 * 109.46637 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46777 * 300.00106 * 3 2 1 34 34 H 1.08999 * 109.47099 * 59.99773 * 3 2 1 35 35 H 1.08003 * 126.07927 * 0.04505 * 5 4 2 36 36 H 1.07993 * 120.04037 * 0.25152 * 9 8 7 37 37 H 1.08003 * 119.96116 * 180.02562 * 10 9 8 38 38 H 0.97007 * 119.99925 * 324.87460 * 12 11 10 39 39 H 1.09003 * 109.47131 * 300.00214 * 15 13 12 40 40 H 1.09002 * 109.46760 * 59.99682 * 15 13 12 41 41 H 1.09003 * 109.47377 * 300.00281 * 16 15 13 42 42 H 1.09002 * 109.47292 * 60.00225 * 16 15 13 43 43 H 0.96996 * 120.00261 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.96475 * 179.97438 * 25 11 10 45 45 H 1.07997 * 120.03528 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8088 -1.8083 1.2562 6 7 3.0318 -2.1244 2.5412 7 6 2.4133 -1.2512 3.3015 8 6 2.4072 -1.2449 4.7788 9 6 3.1027 -2.2282 5.4857 10 6 3.0954 -2.2189 6.8634 11 6 2.3971 -1.2319 7.5499 12 7 2.3922 -1.2253 8.9471 13 6 2.3868 -0.0548 9.6154 14 8 2.3020 0.9907 9.0066 15 6 2.4862 -0.0453 11.1191 16 6 2.4589 1.3991 11.6228 17 6 2.5589 1.4087 13.1264 18 1 2.6348 0.4777 13.6685 19 6 2.5535 2.6061 13.8102 20 7 2.4616 3.7398 13.1500 21 14 2.6767 2.6179 15.6740 22 1 2.7697 1.2223 16.1728 23 1 3.8884 3.3718 16.0851 24 1 1.4708 3.2692 16.2457 25 6 1.7033 -0.2517 6.8492 26 6 1.7062 -0.2553 5.4714 27 8 1.7817 -0.3669 2.5099 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1861 -2.3407 0.3956 36 1 3.6493 -2.9923 4.9531 37 1 3.6334 -2.9788 7.4107 38 1 2.3927 -2.0630 9.4362 39 1 1.6449 -0.5941 11.5423 40 1 3.4194 -0.5187 11.4245 41 1 3.3005 1.9476 11.1996 42 1 1.5259 1.8729 11.3174 43 1 2.4574 4.5821 13.6310 44 1 1.1616 0.5133 7.3854 45 1 1.1668 0.5062 4.9278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360260899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:01 Heat of formation + Delta-G solvation = -29.712902 kcal Electronic energy + Delta-G solvation = -25941.131230 eV Core-core repulsion = 22116.582489 eV Total energy + Delta-G solvation = -3824.548741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.34983 -41.60360 -39.62781 -36.76010 -36.02091 -35.75831 -35.56546 -33.19801 -32.11217 -31.90598 -29.30922 -28.12608 -27.70052 -25.27038 -24.44653 -23.68578 -23.15815 -22.37880 -21.32194 -21.17188 -19.00225 -18.80349 -18.45924 -17.72380 -17.60334 -16.83930 -16.55352 -16.46252 -16.22699 -15.61182 -15.43173 -15.24776 -14.84061 -14.62296 -14.36216 -14.33923 -14.19814 -14.14288 -13.83343 -13.45210 -13.22591 -13.13975 -12.85703 -12.73390 -12.53491 -12.44711 -12.33916 -12.22425 -12.01508 -11.93074 -11.64972 -11.59943 -11.52070 -11.27868 -10.78963 -10.57553 -10.08761 -10.06912 -8.87315 -8.18311 -6.31864 -0.48586 0.31484 0.69934 1.43117 1.43970 1.50617 1.53105 1.57236 1.76357 2.04460 2.43693 2.74404 2.90336 3.15407 3.54520 3.73317 3.86427 3.91580 3.94000 4.06899 4.08177 4.23279 4.29178 4.38191 4.47782 4.52842 4.55358 4.58749 4.69973 4.75568 4.87192 4.89333 4.95449 5.06229 5.08368 5.11364 5.22836 5.24729 5.26131 5.31435 5.34975 5.40935 5.51102 5.62763 5.83912 5.87071 6.16999 6.43171 6.63192 6.86980 7.17108 7.38552 8.94435 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.001855 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.734895 B =15088.492282 C =15931.834571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 C -0.150 4.150 4 C -0.040 4.040 5 C -0.048 4.048 6 N -0.489 5.489 7 C 0.219 3.781 8 C -0.054 4.054 9 C -0.048 4.048 10 C -0.134 4.134 11 C 0.161 3.839 12 N -0.661 5.661 13 C 0.513 3.487 14 O -0.561 6.561 15 C -0.116 4.116 16 C 0.039 3.961 17 C -0.540 4.540 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.144 4.144 26 C -0.073 4.073 27 O -0.206 6.206 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.215 0.785 36 H 0.156 0.844 37 H 0.172 0.828 38 H 0.433 0.567 39 H 0.113 0.887 40 H 0.112 0.888 41 H -0.017 1.017 42 H -0.015 1.015 43 H 0.262 0.738 44 H 0.122 0.878 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -16.082 -26.486 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 C -0.207 4.207 4 C -0.093 4.093 5 C -0.187 4.187 6 N -0.218 5.218 7 C 0.017 3.983 8 C -0.056 4.056 9 C -0.067 4.067 10 C -0.154 4.154 11 C 0.065 3.935 12 N -0.308 5.308 13 C 0.303 3.697 14 O -0.438 6.438 15 C -0.156 4.156 16 C 0.002 3.998 17 C -0.578 4.578 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.175 1.175 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.093 4.093 27 O -0.093 6.093 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.232 0.768 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.273 0.727 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.031 -15.623 -26.567 30.837 hybrid contribution -0.450 1.086 0.858 1.455 sum -1.480 -14.537 -25.709 29.571 Atomic orbital electron populations 1.21891 0.93065 1.02634 1.03027 1.20014 0.96824 0.96074 0.89549 1.21899 1.01424 0.94408 1.03013 1.24295 1.02271 0.99084 0.83690 1.23632 1.02206 0.97822 0.95086 1.70616 1.22217 1.25834 1.03135 1.23851 0.94480 0.86861 0.93149 1.17384 1.04600 0.99668 0.83984 1.21092 0.95882 0.96533 0.93226 1.21131 1.00083 1.00544 0.93649 1.18213 0.95217 0.96509 0.83524 1.43536 1.72920 1.10191 1.04125 1.21664 0.73622 0.82729 0.91697 1.90680 1.48634 1.33817 1.70645 1.21674 1.05557 1.00662 0.87687 1.18723 0.94922 0.91225 0.94971 1.21749 1.50121 0.93400 0.92565 0.90338 1.26134 0.94795 0.95263 1.04382 1.70179 1.51470 0.98296 1.37863 0.85281 0.77430 0.79044 0.78536 1.17457 1.20831 1.20793 1.21175 1.00895 1.00418 0.93942 1.21074 0.97578 0.97189 0.93484 1.84450 1.58793 1.48565 1.17518 0.93840 0.89198 0.92168 0.84800 0.92396 0.89150 0.93909 0.76820 0.82658 0.81046 0.72688 0.86903 0.86967 0.99839 0.99698 0.92923 0.86010 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.18 71.98 0.66 -0.90 16 2 C -0.01 -0.07 3.33 -11.54 -0.04 -0.11 16 3 C -0.15 -1.69 9.18 71.98 0.66 -1.03 16 4 C -0.04 -0.75 5.89 24.83 0.15 -0.61 16 5 C -0.05 -0.90 11.77 83.47 0.98 0.08 16 6 N -0.49 -12.08 10.91 -305.10 -3.33 -15.41 16 7 C 0.22 5.75 7.89 87.29 0.69 6.44 16 8 C -0.05 -1.41 5.87 -20.08 -0.12 -1.52 16 9 C -0.05 -1.03 9.68 22.50 0.22 -0.81 16 10 C -0.13 -2.69 9.95 22.35 0.22 -2.46 16 11 C 0.16 4.27 6.30 38.27 0.24 4.51 16 12 N -0.66 -16.79 5.32 -303.41 -1.62 -18.41 16 13 C 0.51 18.58 7.67 87.66 0.67 19.25 16 14 O -0.56 -26.08 13.40 -3.04 -0.04 -26.12 16 15 C -0.12 -4.32 5.64 29.84 0.17 -4.15 16 16 C 0.04 2.11 4.26 29.84 0.13 2.24 16 17 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 18 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 19 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 20 N -0.94 -58.99 13.29 21.45 0.28 -58.70 16 21 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 22 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.14 -4.45 8.67 22.35 0.19 -4.26 16 26 C -0.07 -2.04 9.71 22.50 0.22 -1.82 16 27 O -0.21 -5.16 10.52 -8.99 -0.09 -5.26 16 28 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.13 0.67 8.11 -2.39 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.16 2.86 7.83 -2.91 -0.02 2.84 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.43 7.00 8.82 -92.70 -0.82 6.19 16 39 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 41 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 42 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.12 4.44 6.21 -2.92 -0.02 4.42 16 45 H 0.13 3.47 7.89 -2.91 -0.02 3.45 16 Total: -1.00 -80.16 386.22 3.16 -77.00 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.19 Total: 15.99 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.74 Total: -14.88 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -4.66 Total: -92.52 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.14 Total: -31.38 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -80.16 3.16 -77.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360260899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.287 kcal (2) G-P(sol) polarization free energy of solvation -80.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds