Wall clock time and date at job start Tue Mar 31 2020 15:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.53005 * 109.46753 * 119.99778 * 2 1 3 5 5 C 1.53001 * 109.46796 * 175.00103 * 4 2 1 6 6 N 1.46502 * 109.47250 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00014 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00322 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99710 * 180.02562 * 7 6 5 10 10 H 1.09002 * 108.70102 * 300.69656 * 9 7 6 11 11 C 1.54563 * 108.75600 * 58.95211 * 9 7 6 12 12 S 1.83984 * 101.42426 * 97.63575 * 11 9 7 13 13 C 1.84073 * 93.84705 * 32.40252 * 12 11 9 14 14 N 1.45505 * 108.75326 * 182.44198 * 9 7 6 15 15 C 1.34773 * 122.42995 * 58.09147 * 14 9 7 16 16 O 1.21283 * 119.99743 * 0.02562 * 15 14 9 17 17 C 1.50692 * 119.99947 * 179.97438 * 15 14 9 18 18 C 1.53006 * 109.47282 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47113 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00462 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99585 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00257 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99581 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47489 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47345 * 120.00177 * 23 21 19 26 26 H 1.48510 * 109.46797 * 239.99380 * 23 21 19 27 27 H 1.08993 * 109.47280 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46682 * 60.00478 * 1 2 3 29 29 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47280 * 239.99899 * 2 1 3 31 31 H 1.09007 * 109.46652 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47088 * 299.99058 * 3 2 1 33 33 H 1.08993 * 109.47356 * 59.99946 * 3 2 1 34 34 H 1.08996 * 109.47120 * 55.00079 * 4 2 1 35 35 H 1.08996 * 109.47210 * 294.99643 * 4 2 1 36 36 H 1.09008 * 109.47246 * 59.99771 * 5 4 2 37 37 H 1.08996 * 109.47317 * 300.00036 * 5 4 2 38 38 H 0.97000 * 119.99819 * 359.97438 * 6 5 4 39 39 H 1.08999 * 111.05472 * 215.72123 * 11 9 7 40 40 H 1.09002 * 111.05230 * 339.69927 * 11 9 7 41 41 H 1.09000 * 110.77794 * 208.19758 * 13 12 11 42 42 H 1.08997 * 110.77753 * 84.77511 * 13 12 11 43 43 H 1.09000 * 109.47555 * 299.99842 * 17 15 14 44 44 H 1.08997 * 109.47338 * 60.00245 * 17 15 14 45 45 H 1.09000 * 109.46889 * 299.99936 * 18 17 15 46 46 H 1.08997 * 109.47002 * 59.99711 * 18 17 15 47 47 H 0.96998 * 120.00187 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0532 -1.5211 2.3846 7 6 5.3741 -1.7324 2.5486 8 8 6.1584 -1.3519 1.7055 9 6 5.8764 -2.4428 3.7791 10 1 5.5703 -1.8767 4.6589 11 6 5.2307 -3.8457 3.8415 12 16 6.5598 -4.8912 3.1168 13 6 7.9183 -3.8395 3.7776 14 7 7.3301 -2.4865 3.7334 15 6 8.0846 -1.3725 3.6558 16 8 7.5544 -0.2822 3.6220 17 6 9.5869 -1.4815 3.6121 18 6 10.1977 -0.0812 3.5262 19 6 11.7000 -0.1904 3.4820 20 1 12.1721 -1.1612 3.5125 21 6 12.4719 0.9495 3.4035 22 7 11.8971 2.1317 3.3668 23 14 14.3342 0.8142 3.3494 24 1 14.7286 -0.6163 3.4041 25 1 14.8381 1.4192 2.0902 26 1 14.9167 1.5327 4.5113 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1583 2.1370 36 1 3.9995 0.1676 1.1421 37 1 3.8532 -1.3939 0.3004 38 1 3.4259 -1.8251 3.0591 39 1 5.0220 -4.1352 4.8714 40 1 4.3267 -3.8880 3.2338 41 1 8.7993 -3.8992 3.1385 42 1 8.1625 -4.1217 4.8017 43 1 9.9417 -1.9773 4.5157 44 1 9.8839 -2.0620 2.7387 45 1 9.8430 0.4150 2.6229 46 1 9.9007 0.4989 4.3999 47 1 12.4401 2.9335 3.3113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361770126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:27 Heat of formation + Delta-G solvation = -81.563643 kcal Electronic energy + Delta-G solvation = -26165.570822 eV Core-core repulsion = 22474.217616 eV Total energy + Delta-G solvation = -3691.353207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 6.33 seconds Orbital eigenvalues (eV) -40.52854 -38.75842 -37.21939 -35.89784 -34.42133 -33.47962 -32.00217 -30.62067 -29.13150 -27.46985 -27.32149 -25.92605 -24.44748 -23.15730 -21.65791 -20.71525 -19.99202 -18.95518 -17.66648 -17.52030 -16.81344 -16.02699 -15.94018 -15.70051 -15.36664 -14.97631 -14.80025 -14.39354 -14.19804 -14.08753 -13.94872 -13.67626 -13.24749 -13.12595 -12.96129 -12.67983 -12.50916 -12.34026 -12.13933 -12.06645 -11.99695 -11.74059 -11.20415 -11.12377 -10.98948 -10.95554 -10.92593 -10.66769 -10.55947 -9.97979 -9.93866 -9.63522 -9.19218 -9.10477 -9.01706 -8.64556 -8.29719 -8.07672 -5.93419 -3.97703 1.37950 1.75696 2.64045 2.68604 3.07692 3.33608 3.34756 3.41660 3.45093 4.00964 4.39294 4.44621 4.49173 4.50930 4.61797 4.79617 4.89601 4.96708 4.98001 5.10294 5.15098 5.18790 5.30460 5.32803 5.36793 5.38690 5.41648 5.52305 5.60170 5.74789 5.76707 5.82926 6.02772 6.08368 6.13876 6.23177 6.28244 6.35853 6.84315 7.38282 7.50062 7.77186 7.89357 8.10006 8.25455 8.40216 8.68183 9.10593 9.65597 11.17642 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.002946 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.438576 B = 9503.465290 C =11521.850594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.125 4.125 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.507 3.493 8 O -0.496 6.496 9 C 0.117 3.883 10 H 0.108 0.892 11 C -0.070 4.070 12 S -0.267 6.267 13 C 0.163 3.837 14 N -0.614 5.614 15 C 0.533 3.467 16 O -0.508 6.508 17 C -0.123 4.123 18 C 0.038 3.962 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.822 -12.683 -0.185 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.163 4.163 5 C -0.004 4.004 6 N -0.391 5.391 7 C 0.290 3.710 8 O -0.367 6.367 9 C 0.007 3.993 10 H 0.126 0.874 11 C -0.219 4.219 12 S -0.041 6.041 13 C -0.070 4.070 14 N -0.354 5.354 15 C 0.323 3.677 16 O -0.380 6.380 17 C -0.163 4.163 18 C 0.000 4.000 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.432 -12.572 -1.542 26.637 hybrid contribution 0.648 0.768 0.939 1.375 sum -22.784 -11.804 -0.603 25.668 Atomic orbital electron populations 1.21834 0.94973 1.01652 1.01912 1.21036 0.95774 0.96641 0.97820 1.21942 1.01789 0.95557 1.01851 1.21859 0.94312 1.01112 0.99046 1.21413 0.93511 0.97910 0.87604 1.45902 1.07228 1.61722 1.24283 1.20655 0.82255 0.79934 0.88167 1.90777 1.54746 1.48161 1.43012 1.21079 0.83775 0.96120 0.98350 0.87422 1.24489 0.99710 0.92295 1.05390 1.88341 1.03714 1.39112 1.72964 1.24278 0.97215 0.81629 1.03919 1.48570 1.03064 1.06433 1.77298 1.21462 0.90602 0.81947 0.73685 1.90678 1.74362 1.26242 1.46755 1.21891 0.87113 1.04925 1.02375 1.18910 0.94300 0.88079 0.98675 1.21238 0.91395 0.92664 1.51080 0.92516 1.25026 0.98635 0.95411 0.95332 1.70010 1.35186 0.97460 1.50131 0.86535 0.85770 0.78076 0.77579 1.19727 1.21009 1.21041 0.92648 0.92556 0.92740 0.90872 0.91981 0.92615 0.92575 0.91370 0.91199 0.91069 0.91631 0.77112 0.87009 0.86198 0.86155 0.88191 0.90161 0.90029 0.95638 0.95856 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.66 2.92 -90.62 -0.26 -0.92 16 3 C -0.15 -1.23 8.95 37.16 0.33 -0.90 16 4 C -0.13 -0.87 4.80 -26.73 -0.13 -1.00 16 5 C 0.12 1.24 5.43 -4.04 -0.02 1.22 16 6 N -0.74 -7.77 5.16 -60.29 -0.31 -8.08 16 7 C 0.51 7.61 6.43 -10.99 -0.07 7.53 16 8 O -0.50 -10.26 14.54 -14.48 -0.21 -10.47 16 9 C 0.12 1.46 2.90 -68.80 -0.20 1.26 16 10 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.07 -0.58 6.94 37.98 0.26 -0.31 16 12 S -0.27 -2.99 23.43 -107.50 -2.52 -5.51 16 13 C 0.16 1.96 7.21 60.45 0.44 2.39 16 14 N -0.61 -9.49 2.78 -169.16 -0.47 -9.96 16 15 C 0.53 10.94 6.74 -10.99 -0.07 10.86 16 16 O -0.51 -12.52 14.53 -14.49 -0.21 -12.73 16 17 C -0.12 -2.61 4.43 -27.88 -0.12 -2.73 16 18 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 19 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -27.90 13.29 55.43 0.74 -27.17 16 23 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 6.56 -51.92 -0.34 0.24 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.91 6.56 -51.92 -0.34 0.57 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 2.64 8.06 -40.82 -0.33 2.32 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.12 0.79 7.18 -51.93 -0.37 0.41 16 41 H 0.12 1.45 7.13 -51.93 -0.37 1.08 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.63 7.63 -51.93 -0.40 1.24 16 45 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -38.45 390.58 -10.19 -48.63 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.03 Total: -1.54 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.04 Total: 3.95 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.05 Total: -45.20 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.42 Total: -23.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.52 Total: -5.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.45 -10.19 -48.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361770126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.929 kcal (2) G-P(sol) polarization free energy of solvation -38.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.33 seconds