Wall clock time and date at job start Tue Mar 31 2020 15:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46660 * 2 1 4 4 C 1.53005 * 109.46753 * 119.99778 * 2 1 3 5 5 C 1.53001 * 109.46796 * 175.00103 * 4 2 1 6 6 N 1.46502 * 109.47250 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00014 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00322 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99710 * 180.02562 * 7 6 5 10 10 H 1.09002 * 108.70102 * 300.69656 * 9 7 6 11 11 C 1.54563 * 108.75600 * 58.95211 * 9 7 6 12 12 S 1.83984 * 101.42426 * 97.63575 * 11 9 7 13 13 C 1.84073 * 93.84705 * 32.40252 * 12 11 9 14 14 N 1.45505 * 108.75326 * 182.44198 * 9 7 6 15 15 C 1.34773 * 122.42995 * 58.09147 * 14 9 7 16 16 O 1.21283 * 119.99743 * 0.02562 * 15 14 9 17 17 C 1.50692 * 119.99947 * 179.97438 * 15 14 9 18 18 C 1.53006 * 109.47282 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47113 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00462 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99585 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00257 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99581 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47489 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47345 * 120.00177 * 23 21 19 26 26 H 1.48510 * 109.46797 * 239.99380 * 23 21 19 27 27 H 1.08993 * 109.47280 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46682 * 60.00478 * 1 2 3 29 29 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47280 * 239.99899 * 2 1 3 31 31 H 1.09007 * 109.46652 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47088 * 299.99058 * 3 2 1 33 33 H 1.08993 * 109.47356 * 59.99946 * 3 2 1 34 34 H 1.08996 * 109.47120 * 55.00079 * 4 2 1 35 35 H 1.08996 * 109.47210 * 294.99643 * 4 2 1 36 36 H 1.09008 * 109.47246 * 59.99771 * 5 4 2 37 37 H 1.08996 * 109.47317 * 300.00036 * 5 4 2 38 38 H 0.97000 * 119.99819 * 359.97438 * 6 5 4 39 39 H 1.08999 * 111.05472 * 215.72123 * 11 9 7 40 40 H 1.09002 * 111.05230 * 339.69927 * 11 9 7 41 41 H 1.09000 * 110.77794 * 208.19758 * 13 12 11 42 42 H 1.08997 * 110.77753 * 84.77511 * 13 12 11 43 43 H 1.09000 * 109.47555 * 299.99842 * 17 15 14 44 44 H 1.08997 * 109.47338 * 60.00245 * 17 15 14 45 45 H 1.09000 * 109.46889 * 299.99936 * 18 17 15 46 46 H 1.08997 * 109.47002 * 59.99711 * 18 17 15 47 47 H 0.96998 * 120.00187 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0532 -1.5211 2.3846 7 6 5.3741 -1.7324 2.5486 8 8 6.1584 -1.3519 1.7055 9 6 5.8764 -2.4428 3.7791 10 1 5.5703 -1.8767 4.6589 11 6 5.2307 -3.8457 3.8415 12 16 6.5598 -4.8912 3.1168 13 6 7.9183 -3.8395 3.7776 14 7 7.3301 -2.4865 3.7334 15 6 8.0846 -1.3725 3.6558 16 8 7.5544 -0.2822 3.6220 17 6 9.5869 -1.4815 3.6121 18 6 10.1977 -0.0812 3.5262 19 6 11.7000 -0.1904 3.4820 20 1 12.1721 -1.1612 3.5125 21 6 12.4719 0.9495 3.4035 22 7 11.8971 2.1317 3.3668 23 14 14.3342 0.8142 3.3494 24 1 14.7286 -0.6163 3.4041 25 1 14.8381 1.4192 2.0902 26 1 14.9167 1.5327 4.5113 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1583 2.1370 36 1 3.9995 0.1676 1.1421 37 1 3.8532 -1.3939 0.3004 38 1 3.4259 -1.8251 3.0591 39 1 5.0220 -4.1352 4.8714 40 1 4.3267 -3.8880 3.2338 41 1 8.7993 -3.8992 3.1385 42 1 8.1625 -4.1217 4.8017 43 1 9.9417 -1.9773 4.5157 44 1 9.8839 -2.0620 2.7387 45 1 9.8430 0.4150 2.6229 46 1 9.9007 0.4989 4.3999 47 1 12.4401 2.9335 3.3113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361770126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:19 Heat of formation + Delta-G solvation = -107.916495 kcal Electronic energy + Delta-G solvation = -26166.713568 eV Core-core repulsion = 22474.217616 eV Total energy + Delta-G solvation = -3692.495952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 4.90 seconds Orbital eigenvalues (eV) -41.77878 -40.10194 -38.03684 -37.18204 -35.62002 -35.43085 -33.45933 -32.25854 -29.93704 -28.39224 -28.05718 -27.83505 -25.49201 -24.38267 -23.20174 -21.77900 -20.93675 -20.24364 -19.02440 -18.70317 -18.36581 -17.54018 -16.96803 -16.70815 -16.60832 -16.49378 -16.02423 -15.93993 -15.23159 -14.92978 -14.83188 -14.69723 -14.58505 -14.28155 -14.17167 -13.83331 -13.78043 -13.55754 -13.26543 -13.10733 -13.09217 -12.85738 -12.72180 -12.45376 -12.44798 -11.98301 -11.85753 -11.69846 -11.63016 -11.57594 -11.54239 -11.30969 -11.17953 -10.75699 -10.59990 -10.15249 -9.89658 -8.92426 -8.19821 -6.34340 0.52779 0.92122 1.40160 1.42711 1.46060 1.53735 1.56135 1.73737 2.16511 2.41395 3.10207 3.13134 3.55405 3.70623 3.79477 3.89482 4.01286 4.06274 4.07719 4.23031 4.26930 4.33337 4.39641 4.42378 4.42743 4.50666 4.61959 4.74412 4.78664 4.93987 4.94714 4.96619 5.05255 5.10200 5.13663 5.29955 5.38613 5.43752 5.46646 5.47542 5.58232 5.81783 6.04649 6.14648 6.47429 6.83641 7.11358 7.25334 7.35954 8.93411 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.002946 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.438576 B = 9503.465290 C =11521.850594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.155 4.155 4 C -0.112 4.112 5 C 0.119 3.881 6 N -0.715 5.715 7 C 0.498 3.502 8 O -0.564 6.564 9 C 0.109 3.891 10 H 0.125 0.875 11 C -0.048 4.048 12 S -0.285 6.285 13 C 0.155 3.845 14 N -0.608 5.608 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.113 4.113 18 C 0.047 3.953 19 C -0.542 4.542 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.939 5.939 23 Si 0.976 3.024 24 H -0.251 1.251 25 H -0.282 1.282 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.418 0.582 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.113 0.887 44 H 0.094 0.906 45 H -0.027 1.027 46 H -0.014 1.014 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.906 -15.859 1.216 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.213 4.213 4 C -0.150 4.150 5 C -0.004 4.004 6 N -0.370 5.370 7 C 0.282 3.718 8 O -0.441 6.441 9 C 0.000 4.000 10 H 0.142 0.858 11 C -0.196 4.196 12 S -0.059 6.059 13 C -0.078 4.078 14 N -0.345 5.345 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.152 4.152 18 C 0.009 3.991 19 C -0.579 4.579 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.800 3.200 24 H -0.174 1.174 25 H -0.208 1.208 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.256 0.744 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.131 0.869 44 H 0.112 0.888 45 H -0.009 1.009 46 H 0.004 0.996 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.594 -15.848 -0.107 29.258 hybrid contribution 0.868 1.754 0.469 2.012 sum -23.727 -14.094 0.362 27.599 Atomic orbital electron populations 1.21791 0.93395 1.02488 1.02228 1.21049 0.96967 0.95596 0.97721 1.21952 1.00267 0.96812 1.02251 1.21798 0.91144 1.02650 0.99389 1.21406 0.95978 0.95907 0.87143 1.45750 1.06383 1.60205 1.24644 1.21245 0.82999 0.79325 0.88190 1.90755 1.56651 1.51184 1.45525 1.21405 0.82087 0.98999 0.97483 0.85796 1.24701 0.98668 0.88055 1.08198 1.88476 1.04686 1.38788 1.73974 1.24600 0.97480 0.79668 1.06008 1.48355 1.04488 1.06469 1.75189 1.21128 0.90594 0.82505 0.73503 1.90651 1.75153 1.28674 1.49623 1.21636 0.88176 1.00919 1.04505 1.18649 0.94829 0.91198 0.94417 1.21721 0.91933 0.93690 1.50595 0.90412 1.26181 1.04991 0.94835 0.94576 1.70195 1.37718 0.98614 1.51334 0.85239 0.78008 0.79205 0.77578 1.17426 1.20806 1.20307 0.92197 0.92445 0.91610 0.91332 0.94357 0.92131 0.92285 0.88939 0.90244 0.94250 0.92955 0.74419 0.82728 0.83997 0.86559 0.84735 0.86867 0.88784 1.00883 0.99553 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 2 C -0.09 -1.25 2.92 -10.79 -0.03 -1.28 16 3 C -0.16 -2.58 8.95 71.98 0.64 -1.93 16 4 C -0.11 -1.39 4.80 30.60 0.15 -1.24 16 5 C 0.12 2.55 5.43 86.38 0.47 3.02 16 6 N -0.72 -14.45 5.16 -463.06 -2.39 -16.84 16 7 C 0.50 14.99 6.43 87.66 0.56 15.56 16 8 O -0.56 -24.69 14.54 16.14 0.23 -24.45 16 9 C 0.11 2.55 2.90 44.96 0.13 2.68 16 10 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 11 C -0.05 -0.60 6.94 72.51 0.50 -0.10 16 12 S -0.28 -5.60 23.43 -56.49 -1.32 -6.92 16 13 C 0.15 3.36 7.21 127.56 0.92 4.28 16 14 N -0.61 -18.29 2.78 -807.48 -2.25 -20.53 16 15 C 0.53 22.54 6.74 87.66 0.59 23.13 16 16 O -0.56 -29.59 14.53 16.12 0.23 -29.35 16 17 C -0.11 -4.87 4.43 29.85 0.13 -4.73 16 18 C 0.05 2.74 4.26 29.85 0.13 2.86 16 19 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 20 H 0.08 4.15 7.74 -2.91 -0.02 4.12 16 21 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 22 N -0.94 -61.34 13.29 21.45 0.28 -61.06 16 23 Si 0.98 45.44 29.54 68.60 2.03 47.47 16 24 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.80 6.56 -2.38 -0.02 0.79 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 1.11 6.56 -2.38 -0.02 1.09 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.42 4.42 8.06 -92.71 -0.75 3.68 16 39 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.14 1.21 7.18 -2.39 -0.02 1.19 16 41 H 0.12 2.63 7.13 -2.39 -0.02 2.61 16 42 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.09 3.79 7.63 -2.39 -0.02 3.77 16 45 H -0.03 -1.86 8.10 -2.39 -0.02 -1.88 16 46 H -0.01 -0.91 8.10 -2.39 -0.02 -0.92 16 47 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -92.32 390.58 2.58 -89.74 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.21 Total: 12.06 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.55 Total: 9.88 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -4.35 Total: -98.43 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: 0.47 Total: -53.81 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.32 Total: -6.92 kcal Total: -92.32 2.58 -89.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361770126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.174 kcal (2) G-P(sol) polarization free energy of solvation -92.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.91 seconds