Wall clock time and date at job start Tue Mar 31 2020 15:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 C 1.52998 * 109.47354 * 120.00530 * 2 1 3 5 5 C 1.52999 * 109.47557 * 64.99648 * 4 2 1 6 6 N 1.46502 * 109.47042 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99691 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99814 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99810 * 180.02562 * 7 6 5 10 10 H 1.08999 * 108.70261 * 61.74914 * 9 7 6 11 11 C 1.54556 * 108.62548 * 303.56214 * 9 7 6 12 12 S 1.84218 * 101.32599 * 262.21531 * 11 9 7 13 13 C 1.84345 * 93.82627 * 327.58778 * 12 11 9 14 14 N 1.45504 * 108.75308 * 179.97438 * 9 7 6 15 15 C 1.34777 * 122.42776 * 301.88981 * 14 9 7 16 16 O 1.21278 * 120.00348 * 359.97438 * 15 14 9 17 17 C 1.50703 * 119.99618 * 179.97438 * 15 14 9 18 18 C 1.52999 * 109.47244 * 179.97438 * 17 15 14 19 19 C 1.50695 * 109.47057 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 H 1.08994 * 109.47299 * 59.99926 * 1 2 3 28 28 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46776 * 299.99666 * 1 2 3 30 30 H 1.09008 * 109.47073 * 240.00051 * 2 1 3 31 31 H 1.08994 * 109.47246 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47038 * 299.99989 * 3 2 1 33 33 H 1.09004 * 109.46600 * 59.99724 * 3 2 1 34 34 H 1.09008 * 109.46673 * 304.99700 * 4 2 1 35 35 H 1.08998 * 109.47133 * 185.00198 * 4 2 1 36 36 H 1.08998 * 109.46561 * 60.00214 * 5 4 2 37 37 H 1.09005 * 109.46977 * 300.00347 * 5 4 2 38 38 H 0.97000 * 119.99941 * 0.02562 * 6 5 4 39 39 H 1.08994 * 111.05733 * 20.22548 * 11 9 7 40 40 H 1.09002 * 111.05143 * 144.20775 * 11 9 7 41 41 H 1.08997 * 110.89460 * 275.43365 * 13 12 11 42 42 H 1.09004 * 110.76482 * 151.92819 * 13 12 11 43 43 H 1.09002 * 109.47387 * 59.99847 * 17 15 14 44 44 H 1.08998 * 109.46985 * 299.99880 * 17 15 14 45 45 H 1.09002 * 109.46997 * 59.99677 * 18 17 15 46 46 H 1.09000 * 109.46625 * 300.00102 * 18 17 15 47 47 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 1.8831 -4.2022 2.5478 8 8 1.2636 -4.8149 1.7042 9 6 2.3845 -4.9123 3.7788 10 1 1.9176 -4.4638 4.6556 11 6 3.9144 -4.7142 3.8743 12 16 4.5295 -6.2882 3.1410 13 6 3.1052 -7.2790 3.7638 14 7 1.9916 -6.3113 3.7044 15 6 0.7044 -6.6956 3.5947 16 8 -0.1760 -5.8625 3.5552 17 6 0.3592 -8.1608 3.5213 18 6 -1.1576 -8.3220 3.4021 19 6 -1.5027 -9.7871 3.3293 20 1 -0.7187 -10.5291 3.3641 21 6 -2.8196 -10.1804 3.2183 22 7 -3.7744 -9.2769 3.1764 23 14 -3.2475 -11.9964 3.1273 24 1 -3.4650 -12.5231 4.4987 25 1 -2.1321 -12.7362 2.4841 26 1 -4.4857 -12.1738 2.3268 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2950 36 1 2.0699 -2.6550 0.3001 37 1 0.5489 -2.2725 1.1420 38 1 2.6191 -2.3960 3.0588 39 1 4.2356 -3.8557 3.2846 40 1 4.2323 -4.6152 4.9122 41 1 3.2782 -7.6067 4.7888 42 1 2.9124 -8.1308 3.1116 43 1 0.7077 -8.6619 4.4244 44 1 0.8417 -8.6045 2.6504 45 1 -1.5064 -7.8208 2.4992 46 1 -1.6396 -7.8784 4.2733 47 1 -3.5522 -8.3339 3.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361770127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:40 Heat of formation + Delta-G solvation = -85.454754 kcal Electronic energy + Delta-G solvation = -26208.580494 eV Core-core repulsion = 22517.058556 eV Total energy + Delta-G solvation = -3691.521938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.60023 -38.83501 -37.26293 -35.97773 -34.47889 -33.79249 -32.06836 -30.50747 -29.14826 -27.50191 -27.37817 -25.56119 -24.39965 -23.15370 -21.83088 -20.79795 -20.10238 -19.08783 -17.72454 -17.60657 -16.88623 -16.24651 -16.02336 -15.83568 -15.46339 -15.06096 -14.88059 -14.28501 -14.12956 -13.99853 -13.77033 -13.68054 -13.43476 -13.26451 -13.02291 -12.82284 -12.54441 -12.38967 -12.14376 -12.08004 -12.05609 -11.77781 -11.46455 -11.23747 -11.02378 -10.98970 -10.79626 -10.72142 -10.10752 -10.09063 -10.03967 -9.91915 -9.32870 -9.15716 -8.71613 -8.51192 -8.25229 -8.13188 -6.28990 -3.98882 1.31947 1.69633 2.55906 2.63975 3.00126 3.25417 3.46778 3.51478 3.66919 3.94381 4.34478 4.40883 4.47457 4.57787 4.59574 4.73931 4.84086 4.91391 4.93518 5.06344 5.09238 5.12695 5.27391 5.28435 5.30076 5.33945 5.48915 5.49106 5.56935 5.70966 5.72603 5.79980 5.99232 6.02588 6.04766 6.11037 6.18942 6.30387 6.69715 7.32252 7.40721 7.54038 7.61198 8.18925 8.22509 8.52092 8.58764 8.94838 9.74817 11.12078 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.002936 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.897459 B = 9534.315787 C =11510.142553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.125 4.125 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.506 3.494 8 O -0.495 6.495 9 C 0.116 3.884 10 H 0.109 0.891 11 C -0.069 4.069 12 S -0.267 6.267 13 C 0.164 3.836 14 N -0.614 5.614 15 C 0.533 3.467 16 O -0.510 6.510 17 C -0.116 4.116 18 C 0.025 3.975 19 C -0.607 4.607 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 1.073 2.927 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.284 1.284 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.395 0.605 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.016 0.984 46 H 0.014 0.986 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.034 18.819 0.396 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.163 4.163 5 C -0.004 4.004 6 N -0.391 5.391 7 C 0.289 3.711 8 O -0.367 6.367 9 C 0.006 3.994 10 H 0.126 0.874 11 C -0.218 4.218 12 S -0.041 6.041 13 C -0.070 4.070 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.382 6.382 17 C -0.156 4.156 18 C -0.012 4.012 19 C -0.646 4.646 20 H 0.068 0.932 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.901 3.099 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.210 1.210 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.229 0.771 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.738 17.428 -1.079 25.613 hybrid contribution 0.766 1.659 1.118 2.142 sum 19.503 19.088 0.038 27.290 Atomic orbital electron populations 1.21942 0.94849 1.02471 1.01870 1.21037 0.96288 0.96143 0.97810 1.21833 1.00832 0.95779 1.01927 1.21861 1.01271 0.94135 0.99065 1.21417 1.00188 0.91236 0.87601 1.45910 1.59460 1.09449 1.24308 1.20654 0.80157 0.82075 0.88180 1.90782 1.37385 1.65537 1.42972 1.21080 0.94576 0.85375 0.98321 0.87363 1.24531 0.93079 0.98862 1.05369 1.88424 1.34117 1.07703 1.73890 1.24334 0.84124 0.94368 1.04188 1.48543 1.06962 1.02807 1.76992 1.21432 0.79320 0.93221 0.73721 1.90667 1.46080 1.54528 1.46964 1.21743 1.02987 0.88290 1.02567 1.19023 0.87487 0.97352 0.97348 1.22035 0.95019 0.91479 1.56044 0.93193 1.25852 0.92690 1.06559 0.93854 1.70701 1.35035 1.02964 1.46017 0.83501 0.75654 0.74007 0.76708 1.21493 1.21494 1.20996 0.92582 0.92025 0.92581 0.90858 0.92721 0.92537 0.92640 0.91202 0.91341 0.91600 0.91100 0.77090 0.86132 0.86962 0.88117 0.86156 0.90008 0.89874 0.96531 0.96790 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 37.16 0.33 -0.87 16 2 C -0.09 -0.65 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -0.84 9.19 37.16 0.34 -0.49 16 4 C -0.13 -0.85 4.80 -26.73 -0.13 -0.98 16 5 C 0.12 1.23 5.43 -4.04 -0.02 1.20 16 6 N -0.74 -7.65 5.13 -60.29 -0.31 -7.96 16 7 C 0.51 7.54 6.53 -10.98 -0.07 7.47 16 8 O -0.50 -10.24 14.40 -15.20 -0.22 -10.46 16 9 C 0.12 1.45 2.91 -68.80 -0.20 1.25 16 10 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.07 -0.56 6.93 37.97 0.26 -0.30 16 12 S -0.27 -2.96 23.45 -107.50 -2.52 -5.49 16 13 C 0.16 1.96 7.23 60.47 0.44 2.40 16 14 N -0.61 -9.46 2.80 -168.97 -0.47 -9.93 16 15 C 0.53 10.94 6.73 -10.98 -0.07 10.86 16 16 O -0.51 -12.49 14.46 -15.19 -0.22 -12.71 16 17 C -0.12 -2.48 4.43 -27.88 -0.12 -2.60 16 18 C 0.03 0.70 3.57 -27.89 -0.10 0.60 16 19 C -0.61 -17.83 9.11 -34.44 -0.31 -18.14 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 21 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 22 N -0.91 -29.40 13.65 55.43 0.76 -28.64 16 23 Si 1.07 25.98 29.90 -169.99 -5.08 20.90 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16 38 H 0.40 2.58 7.88 -40.82 -0.32 2.26 16 39 H 0.12 0.77 7.00 -51.93 -0.36 0.40 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.12 1.46 7.13 -51.93 -0.37 1.09 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.08 1.70 7.64 -51.93 -0.40 1.30 16 45 H 0.02 0.50 7.97 -51.93 -0.41 0.09 16 46 H 0.01 0.41 7.96 -51.93 -0.41 0.00 16 47 H 0.27 8.95 7.22 -40.82 -0.29 8.66 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -39.10 388.82 -10.18 -49.28 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.95 Total: -0.67 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.02 Total: -0.18 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.03 Total: -46.54 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.44 Total: -23.16 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.08 Total: 20.90 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.52 Total: -5.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.10 -10.18 -49.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361770127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.171 kcal (2) G-P(sol) polarization free energy of solvation -39.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds