Wall clock time and date at job start Tue Mar 31 2020 15:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 C 1.52998 * 109.47354 * 120.00530 * 2 1 3 5 5 C 1.52999 * 109.47557 * 64.99648 * 4 2 1 6 6 N 1.46502 * 109.47042 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99691 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99814 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99810 * 180.02562 * 7 6 5 10 10 H 1.08999 * 108.70261 * 61.74914 * 9 7 6 11 11 C 1.54556 * 108.62548 * 303.56214 * 9 7 6 12 12 S 1.84218 * 101.32599 * 262.21531 * 11 9 7 13 13 C 1.84345 * 93.82627 * 327.58778 * 12 11 9 14 14 N 1.45504 * 108.75308 * 179.97438 * 9 7 6 15 15 C 1.34777 * 122.42776 * 301.88981 * 14 9 7 16 16 O 1.21278 * 120.00348 * 359.97438 * 15 14 9 17 17 C 1.50703 * 119.99618 * 179.97438 * 15 14 9 18 18 C 1.52999 * 109.47244 * 179.97438 * 17 15 14 19 19 C 1.50695 * 109.47057 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00538 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99661 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 H 1.08994 * 109.47299 * 59.99926 * 1 2 3 28 28 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46776 * 299.99666 * 1 2 3 30 30 H 1.09008 * 109.47073 * 240.00051 * 2 1 3 31 31 H 1.08994 * 109.47246 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47038 * 299.99989 * 3 2 1 33 33 H 1.09004 * 109.46600 * 59.99724 * 3 2 1 34 34 H 1.09008 * 109.46673 * 304.99700 * 4 2 1 35 35 H 1.08998 * 109.47133 * 185.00198 * 4 2 1 36 36 H 1.08998 * 109.46561 * 60.00214 * 5 4 2 37 37 H 1.09005 * 109.46977 * 300.00347 * 5 4 2 38 38 H 0.97000 * 119.99941 * 0.02562 * 6 5 4 39 39 H 1.08994 * 111.05733 * 20.22548 * 11 9 7 40 40 H 1.09002 * 111.05143 * 144.20775 * 11 9 7 41 41 H 1.08997 * 110.89460 * 275.43365 * 13 12 11 42 42 H 1.09004 * 110.76482 * 151.92819 * 13 12 11 43 43 H 1.09002 * 109.47387 * 59.99847 * 17 15 14 44 44 H 1.08998 * 109.46985 * 299.99880 * 17 15 14 45 45 H 1.09002 * 109.46997 * 59.99677 * 18 17 15 46 46 H 1.09000 * 109.46625 * 300.00102 * 18 17 15 47 47 H 0.97001 * 119.99697 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 1.8831 -4.2022 2.5478 8 8 1.2636 -4.8149 1.7042 9 6 2.3845 -4.9123 3.7788 10 1 1.9176 -4.4638 4.6556 11 6 3.9144 -4.7142 3.8743 12 16 4.5295 -6.2882 3.1410 13 6 3.1052 -7.2790 3.7638 14 7 1.9916 -6.3113 3.7044 15 6 0.7044 -6.6956 3.5947 16 8 -0.1760 -5.8625 3.5552 17 6 0.3592 -8.1608 3.5213 18 6 -1.1576 -8.3220 3.4021 19 6 -1.5027 -9.7871 3.3293 20 1 -0.7187 -10.5291 3.3641 21 6 -2.8196 -10.1804 3.2183 22 7 -3.7744 -9.2769 3.1764 23 14 -3.2475 -11.9964 3.1273 24 1 -3.4650 -12.5231 4.4987 25 1 -2.1321 -12.7362 2.4841 26 1 -4.4857 -12.1738 2.3268 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2950 36 1 2.0699 -2.6550 0.3001 37 1 0.5489 -2.2725 1.1420 38 1 2.6191 -2.3960 3.0588 39 1 4.2356 -3.8557 3.2846 40 1 4.2323 -4.6152 4.9122 41 1 3.2782 -7.6067 4.7888 42 1 2.9124 -8.1308 3.1116 43 1 0.7077 -8.6619 4.4244 44 1 0.8417 -8.6045 2.6504 45 1 -1.5064 -7.8208 2.4992 46 1 -1.6396 -7.8784 4.2733 47 1 -3.5522 -8.3339 3.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361770127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:39 Heat of formation + Delta-G solvation = -112.290628 kcal Electronic energy + Delta-G solvation = -26209.744185 eV Core-core repulsion = 22517.058556 eV Total energy + Delta-G solvation = -3692.685629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85097 -40.17819 -38.07236 -37.25824 -35.99075 -35.47887 -33.45828 -32.18434 -29.94570 -28.43865 -28.07746 -27.44539 -25.49688 -24.49267 -23.39766 -21.87381 -21.01138 -20.31950 -19.22250 -18.75753 -18.46583 -17.80353 -17.02228 -16.78524 -16.66838 -16.17762 -16.07439 -15.62710 -15.37139 -15.02848 -14.95617 -14.84110 -14.69202 -14.38184 -14.18712 -13.86728 -13.79299 -13.60060 -13.54273 -13.20244 -13.11833 -12.74981 -12.69262 -12.47276 -12.10040 -12.08686 -11.88447 -11.87659 -11.66954 -11.65339 -11.56526 -11.24598 -10.97072 -10.70561 -10.57996 -10.19466 -9.96396 -8.97371 -8.72559 -6.44266 0.46893 0.86808 1.37432 1.48403 1.52376 1.63659 1.65314 1.80498 2.10949 2.57747 3.04091 3.14566 3.50319 3.61411 3.76702 3.86882 3.96953 4.01157 4.01476 4.17534 4.22602 4.24233 4.26987 4.32682 4.40011 4.41209 4.58922 4.72231 4.76572 4.78761 4.91746 4.93871 5.01652 5.06362 5.08020 5.24419 5.28020 5.31574 5.35009 5.41279 5.45380 5.88799 5.95402 6.15727 6.42666 6.47601 7.01990 7.19980 7.42285 8.67206 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.002936 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.897459 B = 9534.315787 C =11510.142553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.112 4.112 5 C 0.119 3.881 6 N -0.714 5.714 7 C 0.497 3.503 8 O -0.565 6.565 9 C 0.109 3.891 10 H 0.125 0.875 11 C -0.047 4.047 12 S -0.284 6.284 13 C 0.155 3.845 14 N -0.608 5.608 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.617 4.617 20 H 0.069 0.931 21 C -0.047 4.047 22 N -0.940 5.940 23 Si 1.128 2.872 24 H -0.267 1.267 25 H -0.261 1.261 26 H -0.287 1.287 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.418 0.582 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.093 0.907 45 H -0.030 1.030 46 H -0.017 1.017 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.523 18.976 1.890 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.150 4.150 5 C -0.004 4.004 6 N -0.369 5.369 7 C 0.282 3.718 8 O -0.442 6.442 9 C 0.000 4.000 10 H 0.143 0.857 11 C -0.196 4.196 12 S -0.059 6.059 13 C -0.078 4.078 14 N -0.344 5.344 15 C 0.323 3.677 16 O -0.441 6.441 17 C -0.146 4.146 18 C -0.006 4.006 19 C -0.655 4.655 20 H 0.087 0.913 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.948 3.052 24 H -0.192 1.192 25 H -0.185 1.185 26 H -0.213 1.213 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.256 0.744 39 H 0.161 0.839 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.112 0.888 45 H -0.012 1.012 46 H 0.001 0.999 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.356 17.646 0.455 28.485 hybrid contribution -0.254 1.723 0.621 1.848 sum 22.101 19.369 1.075 29.407 Atomic orbital electron populations 1.21951 0.96007 1.01029 1.02281 1.21050 0.95319 0.97278 0.97704 1.21790 1.01471 0.94393 1.02250 1.21800 1.02706 0.91049 0.99424 1.21411 0.98318 0.93607 0.87106 1.45753 1.58240 1.08258 1.24660 1.21240 0.79221 0.83155 0.88191 1.90762 1.40623 1.67269 1.45506 1.21410 0.97821 0.83317 0.97453 0.85746 1.24752 0.88864 0.97751 1.08191 1.88559 1.32876 1.09530 1.74906 1.24653 0.83116 0.93750 1.06234 1.48333 1.06070 1.05141 1.74864 1.21048 0.80789 0.92239 0.73636 1.90643 1.48260 1.55445 1.49742 1.21506 0.98370 0.90232 1.04501 1.18820 0.91914 0.96183 0.93704 1.22498 0.95726 0.92401 1.54875 0.91278 1.27742 0.93117 1.10916 0.92536 1.70868 1.35954 1.02181 1.48686 0.82837 0.76154 0.68261 0.77987 1.19214 1.18519 1.21267 0.92135 0.94377 0.92235 0.91382 0.91619 0.92450 0.92152 0.90163 0.88949 0.93019 0.94193 0.74371 0.83860 0.82660 0.84690 0.86647 0.86912 0.88842 1.01198 0.99877 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.95 71.98 0.64 -1.87 16 2 C -0.09 -1.23 2.92 -10.79 -0.03 -1.26 16 3 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 4 C -0.11 -1.34 4.80 30.59 0.15 -1.20 16 5 C 0.12 2.51 5.43 86.38 0.47 2.97 16 6 N -0.71 -14.11 5.13 -463.05 -2.38 -16.49 16 7 C 0.50 14.82 6.53 87.66 0.57 15.39 16 8 O -0.56 -24.63 14.40 16.81 0.24 -24.38 16 9 C 0.11 2.51 2.91 44.96 0.13 2.64 16 10 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 11 C -0.05 -0.57 6.93 72.51 0.50 -0.07 16 12 S -0.28 -5.51 23.45 -56.49 -1.32 -6.84 16 13 C 0.15 3.35 7.23 127.55 0.92 4.28 16 14 N -0.61 -18.17 2.80 -806.90 -2.26 -20.43 16 15 C 0.53 22.49 6.73 87.66 0.59 23.08 16 16 O -0.56 -29.31 14.46 16.82 0.24 -29.06 16 17 C -0.11 -4.63 4.43 29.85 0.13 -4.50 16 18 C 0.03 1.83 3.57 29.85 0.11 1.94 16 19 C -0.62 -36.81 9.11 25.60 0.23 -36.57 16 20 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 21 C -0.05 -2.86 5.46 84.65 0.46 -2.40 16 22 N -0.94 -63.15 13.65 21.45 0.29 -62.85 16 23 Si 1.13 51.76 29.90 68.60 2.05 53.81 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.78 6.56 -2.39 -0.02 0.77 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 1.10 6.56 -2.38 -0.02 1.09 16 38 H 0.42 4.20 7.88 -92.71 -0.73 3.47 16 39 H 0.14 1.14 7.00 -2.39 -0.02 1.12 16 40 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.12 2.62 7.13 -2.39 -0.02 2.60 16 43 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 44 H 0.09 3.84 7.64 -2.39 -0.02 3.82 16 45 H -0.03 -2.03 7.97 -2.39 -0.02 -2.05 16 46 H -0.02 -1.09 7.96 -2.39 -0.02 -1.11 16 47 H 0.25 17.59 7.22 -92.71 -0.67 16.92 16 Total: -1.00 -93.65 388.82 2.74 -90.91 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.32 Total: 13.56 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.54 Total: 1.77 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -4.34 Total: -99.77 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: 0.49 Total: -53.45 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.32 Total: -6.84 kcal Total: -93.65 2.74 -90.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361770127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.381 kcal (2) G-P(sol) polarization free energy of solvation -93.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds