Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 C 1.53006 * 109.47226 * 120.00017 * 2 1 3 5 5 H 1.08998 * 109.47438 * 185.00967 * 4 2 1 6 6 S 1.81402 * 109.47088 * 65.01210 * 4 2 1 7 7 C 1.81397 * 102.99994 * 64.33747 * 6 4 2 8 8 C 1.50704 * 109.47107 * 184.84220 * 7 6 4 9 9 H 1.08001 * 119.99536 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00105 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00104 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00060 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47063 * 90.00253 * 12 10 8 14 14 H 1.48498 * 109.47254 * 210.00295 * 12 10 8 15 15 H 1.48503 * 109.46834 * 330.00543 * 12 10 8 16 16 C 1.50702 * 109.46919 * 305.01114 * 4 2 1 17 17 O 1.21284 * 119.99967 * 81.06894 * 16 4 2 18 18 N 1.34771 * 119.99873 * 260.79178 * 16 4 2 19 19 C 1.46923 * 120.63150 * 355.70474 * 18 16 4 20 20 C 1.53627 * 108.54097 * 126.36769 * 19 18 16 21 21 C 1.53048 * 109.24137 * 54.85981 * 20 19 18 22 22 C 1.53045 * 109.53543 * 298.50993 * 21 20 19 23 23 H 1.09001 * 109.49632 * 301.41425 * 22 21 20 24 24 C 1.50700 * 109.49331 * 181.31822 * 22 21 20 25 25 N 1.34765 * 120.00412 * 60.16349 * 24 22 21 26 26 O 1.21283 * 119.99343 * 240.15801 * 24 22 21 27 27 C 1.46936 * 120.62994 * 175.98945 * 18 16 4 28 28 H 1.09008 * 109.46864 * 305.29232 * 1 2 3 29 29 H 1.08993 * 109.46922 * 65.29075 * 1 2 3 30 30 H 1.09004 * 109.47313 * 185.29705 * 1 2 3 31 31 H 1.08995 * 109.47130 * 239.99606 * 2 1 3 32 32 H 1.09002 * 109.47008 * 185.23770 * 3 2 1 33 33 H 1.09000 * 109.46965 * 305.23647 * 3 2 1 34 34 H 1.09002 * 109.47187 * 65.23933 * 3 2 1 35 35 H 1.08998 * 109.47277 * 304.83841 * 7 6 4 36 36 H 1.08996 * 109.46629 * 64.84341 * 7 6 4 37 37 H 0.97001 * 120.00063 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.58969 * 246.20066 * 19 18 16 39 39 H 1.08994 * 109.58714 * 6.63119 * 19 18 16 40 40 H 1.09001 * 109.63488 * 294.87097 * 20 19 18 41 41 H 1.08998 * 109.46192 * 174.73985 * 20 19 18 42 42 H 1.08997 * 109.46194 * 178.49230 * 21 20 19 43 43 H 1.08996 * 109.44558 * 58.52215 * 21 20 19 44 44 H 0.97004 * 120.00030 * 359.97438 * 25 24 22 45 45 H 0.97003 * 120.00563 * 180.02562 * 25 24 22 46 46 H 1.09001 * 109.58218 * 353.37263 * 27 18 16 47 47 H 1.08992 * 109.58530 * 113.65288 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 3.1263 -0.6442 1.2953 6 16 1.5605 -2.4692 1.1764 7 6 2.4718 -3.0826 -0.2671 8 6 2.0831 -4.5137 -0.5356 9 1 1.3605 -5.0051 0.0989 10 6 2.6509 -5.1958 -1.5907 11 7 2.3113 -6.4446 -1.8254 12 14 3.9014 -4.3461 -2.6878 13 1 5.2653 -4.5582 -2.1402 14 1 3.8243 -4.9134 -4.0580 15 1 3.6085 -2.8910 -2.7372 16 6 1.4389 -0.0861 2.4766 17 8 0.3151 -0.3819 2.8239 18 7 2.1522 0.8064 3.1914 19 6 3.5487 1.1004 2.8423 20 6 3.6990 2.6191 2.6664 21 6 3.2060 3.3246 3.9320 22 6 1.7242 3.0095 4.1494 23 1 1.1517 3.3359 3.2811 24 6 1.2317 3.7306 5.3776 25 7 1.2874 5.0758 5.4371 26 8 0.7850 3.1002 6.3125 27 6 1.5499 1.4994 4.3386 28 1 -0.3633 0.5938 0.8389 29 1 -0.3633 0.4296 -0.9335 30 1 -0.3634 -1.0233 0.0949 31 1 1.8933 -0.5139 -0.8899 32 1 3.1260 1.4438 -0.0938 33 1 1.6022 1.9826 -0.8394 34 1 1.7554 1.9285 0.9332 35 1 2.2298 -2.4712 -1.1363 36 1 3.5426 -3.0276 -0.0709 37 1 2.7104 -6.9244 -2.5679 38 1 4.2055 0.7555 3.6409 39 1 3.8065 0.5961 1.9110 40 1 3.1078 2.9492 1.8122 41 1 4.7480 2.8633 2.4991 42 1 3.3359 4.4012 3.8216 43 1 3.7812 2.9754 4.7895 44 1 1.6449 5.5799 4.6894 45 1 0.9707 5.5399 6.2278 46 1 0.4883 1.2583 4.3948 47 1 2.0452 1.1844 5.2569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -85.862496 kcal Electronic energy + Delta-G solvation = -27137.901172 eV Core-core repulsion = 23446.361553 eV Total energy + Delta-G solvation = -3691.539619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89267 -39.66544 -37.29390 -35.71900 -34.26243 -33.04192 -32.91515 -31.57125 -29.36547 -28.34653 -27.01781 -25.53387 -24.58189 -22.67636 -22.13587 -20.99786 -20.05280 -18.92246 -17.93330 -17.30455 -17.03531 -16.93124 -16.31208 -15.60210 -15.50820 -14.87318 -14.82320 -14.60356 -14.24475 -14.15183 -13.85527 -13.76588 -13.47865 -13.21479 -12.91494 -12.75653 -12.68437 -12.48704 -12.11681 -11.94611 -11.89550 -11.51625 -11.45013 -11.03958 -11.01343 -10.91594 -10.81563 -10.73982 -10.35787 -10.24092 -10.13308 -10.10633 -9.61562 -9.50548 -8.88008 -8.73425 -8.72014 -6.75258 -6.18219 -4.20395 2.09188 2.24259 2.66816 3.02335 3.18808 3.25577 3.26172 3.26697 3.61351 4.15625 4.28331 4.29225 4.34767 4.57700 4.61879 4.70394 4.81488 4.88893 4.93722 5.10880 5.12418 5.18184 5.21294 5.36297 5.39728 5.45368 5.51093 5.58342 5.63995 5.76378 5.82712 5.84939 5.97436 6.02851 6.21007 6.34472 6.35629 6.39728 6.55800 6.67071 6.78469 6.87135 7.28905 7.41977 7.85077 8.24711 8.30088 8.85563 9.36992 10.93918 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.003051 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.429102 B = 9173.817554 C = 9494.972683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.101 4.101 5 H 0.097 0.903 6 S -0.202 6.202 7 C 0.036 3.964 8 C -0.512 4.512 9 H 0.084 0.916 10 C 0.080 3.920 11 N -0.890 5.890 12 Si 0.878 3.122 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.266 1.266 16 C 0.548 3.452 17 O -0.511 6.511 18 N -0.615 5.615 19 C 0.098 3.902 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.124 4.124 23 H 0.103 0.897 24 C 0.526 3.474 25 N -0.856 5.856 26 O -0.537 6.537 27 C 0.134 3.866 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.401 0.599 45 H 0.402 0.598 46 H 0.100 0.900 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 27.580 8.133 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.232 4.232 5 H 0.115 0.885 6 S 0.028 5.972 7 C -0.112 4.112 8 C -0.551 4.551 9 H 0.102 0.898 10 C -0.124 4.124 11 N -0.528 5.528 12 Si 0.704 3.296 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.191 1.191 16 C 0.334 3.666 17 O -0.384 6.384 18 N -0.350 5.350 19 C -0.025 4.025 20 C -0.176 4.176 21 C -0.147 4.147 22 C -0.146 4.146 23 H 0.121 0.879 24 C 0.310 3.690 25 N -0.420 5.420 26 O -0.412 6.412 27 C 0.011 3.989 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.229 0.771 45 H 0.232 0.768 46 H 0.118 0.882 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.551 26.061 9.398 27.931 hybrid contribution 1.793 1.563 -1.562 2.845 sum 5.344 27.624 7.836 29.207 Atomic orbital electron populations 1.21950 0.93415 1.04569 1.00750 1.21252 0.98036 0.95295 0.95872 1.22108 1.00716 0.96199 1.02056 1.23550 1.03258 1.00182 0.96241 0.88524 1.87249 1.65861 1.00556 1.43536 1.21534 0.96345 1.00900 0.92404 1.20443 1.26711 0.93082 1.14870 0.89778 1.24854 0.96259 0.94635 0.96702 1.69869 1.43140 1.09682 1.30103 0.86817 0.82091 0.80251 0.80424 1.19925 1.20832 1.19080 1.19796 0.85526 0.78200 0.83036 1.90719 1.18813 1.60210 1.68688 1.48019 1.12878 1.42800 1.31300 1.22013 0.82438 0.95767 1.02304 1.22116 1.02358 0.95082 0.98066 1.21522 0.93304 1.00702 0.99186 1.21712 0.98524 0.97399 0.97000 0.87902 1.20477 0.77371 0.82560 0.88608 1.43871 1.67625 1.07449 1.23008 1.90791 1.45238 1.66494 1.38702 1.21255 1.01501 0.87930 0.88242 0.92683 0.93200 0.89898 0.89656 0.92646 0.92192 0.92358 0.94522 0.95336 0.92226 0.90905 0.88827 0.90483 0.90028 0.91154 0.90902 0.77069 0.76768 0.88193 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.30 37.16 0.31 -2.02 16 2 C -0.08 -1.22 2.64 -90.62 -0.24 -1.46 16 3 C -0.15 -1.58 7.50 37.16 0.28 -1.31 16 4 C -0.10 -1.62 2.02 -27.88 -0.06 -1.68 16 5 H 0.10 1.36 5.54 -51.92 -0.29 1.07 16 6 S -0.20 -4.36 19.33 -107.50 -2.08 -6.44 16 7 C 0.04 0.85 4.52 36.01 0.16 1.02 16 8 C -0.51 -14.55 9.68 -34.44 -0.33 -14.89 16 9 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 10 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 11 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 12 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 16 C 0.55 8.66 5.04 -10.99 -0.06 8.61 16 17 O -0.51 -9.97 14.32 5.55 0.08 -9.89 16 18 N -0.61 -7.29 2.53 -172.50 -0.44 -7.73 16 19 C 0.10 0.83 5.42 -3.49 -0.02 0.81 16 20 C -0.14 -0.77 5.97 -26.38 -0.16 -0.93 16 21 C -0.11 -0.57 5.07 -26.68 -0.14 -0.70 16 22 C -0.12 -0.95 2.68 -91.65 -0.25 -1.20 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 24 C 0.53 4.60 7.43 -10.99 -0.08 4.52 16 25 N -0.86 -3.88 8.76 31.22 0.27 -3.61 16 26 O -0.54 -7.26 16.76 5.55 0.09 -7.17 16 27 C 0.13 1.53 5.05 -3.71 -0.02 1.52 16 28 H 0.05 0.87 6.61 -51.92 -0.34 0.52 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.54 6.97 -51.93 -0.36 1.17 16 31 H 0.09 1.35 6.57 -51.93 -0.34 1.00 16 32 H 0.05 0.49 7.81 -51.93 -0.41 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.58 4.95 -51.93 -0.26 0.32 16 35 H 0.04 0.84 5.85 -51.93 -0.30 0.54 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.82 4.49 -51.93 -0.23 0.59 16 40 H 0.08 0.44 5.98 -51.93 -0.31 0.13 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.21 7.54 -51.93 -0.39 -0.18 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.40 0.64 8.24 -40.82 -0.34 0.30 16 45 H 0.40 1.54 8.93 -40.82 -0.36 1.18 16 46 H 0.10 1.42 7.03 -51.93 -0.37 1.06 16 47 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -35.54 367.83 -8.34 -43.88 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.23 Total: 1.13 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.69 Total: -5.54 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.61 Total: -37.44 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.17 Total: -17.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.08 Total: -6.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.54 -8.34 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.980 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds