Wall clock time and date at job start Tue Mar 31 2020 16:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47454 * 2 1 4 4 C 1.53002 * 109.47079 * 120.00117 * 2 1 3 5 5 H 1.09004 * 109.47255 * 59.70195 * 4 2 1 6 6 S 1.81400 * 109.47066 * 179.70646 * 4 2 1 7 7 C 1.81401 * 102.99840 * 294.99464 * 6 4 2 8 8 C 1.50699 * 109.47253 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99966 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99975 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00100 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99783 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46946 * 89.99743 * 12 10 8 14 14 H 1.48503 * 109.47213 * 209.99865 * 12 10 8 15 15 H 1.48497 * 109.47235 * 329.99588 * 12 10 8 16 16 C 1.50701 * 109.46847 * 299.70139 * 4 2 1 17 17 O 1.21274 * 120.00159 * 282.05744 * 16 4 2 18 18 N 1.34783 * 119.99603 * 102.06043 * 16 4 2 19 19 C 1.46924 * 120.63331 * 354.78876 * 18 16 4 20 20 C 1.53194 * 108.77824 * 233.58940 * 19 18 16 21 21 C 1.53041 * 109.30740 * 305.36423 * 20 19 18 22 22 C 1.53047 * 109.53877 * 61.36706 * 21 20 19 23 23 H 1.08994 * 109.49542 * 58.58441 * 22 21 20 24 24 C 1.50697 * 109.49413 * 178.64770 * 22 21 20 25 25 N 1.34775 * 120.00667 * 299.99602 * 24 22 21 26 26 O 1.21285 * 120.00116 * 120.00158 * 24 22 21 27 27 C 1.46925 * 120.62759 * 174.51121 * 18 16 4 28 28 H 1.09002 * 109.47346 * 301.12357 * 1 2 3 29 29 H 1.09008 * 109.47496 * 181.12024 * 1 2 3 30 30 H 1.09006 * 109.47240 * 61.12577 * 1 2 3 31 31 H 1.09009 * 109.47395 * 239.99714 * 2 1 3 32 32 H 1.08999 * 109.47059 * 59.99454 * 3 2 1 33 33 H 1.09000 * 109.47138 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46611 * 300.00034 * 3 2 1 35 35 H 1.08999 * 109.47603 * 300.00561 * 7 6 4 36 36 H 1.09004 * 109.47088 * 60.00084 * 7 6 4 37 37 H 0.97004 * 119.99678 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.58511 * 353.37437 * 19 18 16 39 39 H 1.08999 * 109.58361 * 113.65501 * 19 18 16 40 40 H 1.08997 * 109.49910 * 65.31193 * 20 19 18 41 41 H 1.08997 * 109.49628 * 185.41479 * 20 19 18 42 42 H 1.09004 * 109.45578 * 181.38164 * 21 20 19 43 43 H 1.08992 * 109.46294 * 301.35699 * 21 20 19 44 44 H 0.97007 * 119.99567 * 0.02562 * 25 24 22 45 45 H 0.97001 * 120.00569 * 180.02562 * 25 24 22 46 46 H 1.09001 * 109.58444 * 246.20220 * 27 18 16 47 47 H 1.09004 * 109.58610 * 6.62586 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6722 -1.7474 1.2519 6 16 3.8539 -0.7289 1.2449 7 6 4.2542 -1.7470 -0.2022 8 6 5.7508 -1.8515 -0.3444 9 1 6.3966 -1.3547 0.3645 10 6 6.2956 -2.5803 -1.3803 11 7 5.5092 -3.1848 -2.2438 12 14 8.1508 -2.7092 -1.5570 13 1 8.6393 -3.8891 -0.7991 14 1 8.5019 -2.8624 -2.9917 15 1 8.7858 -1.4787 -1.0207 16 6 1.5436 -0.0066 2.4797 17 8 2.0819 1.0169 2.8450 18 7 0.5015 -0.5050 3.1741 19 6 -0.2330 -1.6787 2.6826 20 6 -1.7244 -1.3350 2.6164 21 6 -2.1887 -0.8307 3.9847 22 6 -1.4163 0.4386 4.3515 23 1 -1.5809 1.1981 3.5873 24 6 -1.8976 0.9529 5.6837 25 7 -3.1897 1.3005 5.8452 26 8 -1.1221 1.0541 6.6107 27 6 0.0821 0.1116 4.4401 28 1 -0.3634 0.5312 0.8797 29 1 -0.3634 -1.0275 0.0201 30 1 -0.3634 0.4963 -0.8999 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 3.8313 -2.7433 -0.0737 36 1 3.8350 -1.2871 -1.0971 37 1 5.8926 -3.6973 -2.9728 38 1 0.1253 -1.9437 1.6878 39 1 -0.0787 -2.5170 3.3619 40 1 -1.8861 -0.5587 1.8686 41 1 -2.2913 -2.2257 2.3454 42 1 -3.2552 -0.6087 3.9471 43 1 -2.0038 -1.5980 4.7364 44 1 -3.8100 1.2193 5.1038 45 1 -3.4993 1.6319 6.7026 46 1 0.2595 -0.5831 5.2611 47 1 0.6484 1.0282 4.6053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:18 Heat of formation + Delta-G solvation = -92.459206 kcal Electronic energy + Delta-G solvation = -27008.781068 eV Core-core repulsion = 23316.955394 eV Total energy + Delta-G solvation = -3691.825674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81251 -39.60588 -37.23665 -35.59933 -34.21620 -33.13825 -32.85158 -31.49712 -28.54625 -28.22296 -26.91972 -25.44005 -24.52864 -23.08473 -22.09513 -20.92937 -20.02501 -18.80502 -17.89050 -17.24354 -16.94177 -16.65941 -16.00091 -15.50344 -15.43999 -14.89570 -14.76542 -14.55917 -14.38960 -14.10212 -13.67228 -13.62718 -13.30566 -13.12918 -12.75867 -12.73100 -12.37434 -12.17889 -11.96360 -11.87058 -11.75425 -11.44900 -11.38667 -10.97648 -10.94128 -10.89105 -10.74697 -10.66770 -10.63323 -10.19088 -10.06892 -9.86072 -9.62438 -9.37955 -8.77854 -8.62470 -8.60541 -6.60062 -6.19568 -4.23016 2.20617 2.28778 2.75779 3.12969 3.27304 3.31862 3.33064 3.39354 3.82496 4.21057 4.34560 4.36780 4.41127 4.66951 4.70674 4.78665 4.92407 4.97570 5.02967 5.17897 5.18632 5.28205 5.30819 5.45832 5.48251 5.52939 5.56787 5.64465 5.73294 5.82473 5.91365 5.97466 6.09577 6.13995 6.31640 6.38487 6.43205 6.56542 6.88184 6.91317 7.07879 7.11832 7.37004 7.75830 7.89348 8.01618 8.32567 8.78951 9.40061 10.91781 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002838 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.454985 B = 9863.784205 C =10111.348013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.090 4.090 5 H 0.095 0.905 6 S -0.242 6.242 7 C 0.082 3.918 8 C -0.510 4.510 9 H 0.067 0.933 10 C 0.066 3.934 11 N -0.893 5.893 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.548 3.452 17 O -0.514 6.514 18 N -0.615 5.615 19 C 0.097 3.903 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.124 4.124 23 H 0.103 0.897 24 C 0.526 3.474 25 N -0.856 5.856 26 O -0.537 6.537 27 C 0.134 3.866 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.401 0.599 45 H 0.401 0.599 46 H 0.076 0.924 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.132 4.074 8.810 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.208 4.208 4 C -0.221 4.221 5 H 0.113 0.887 6 S -0.012 6.012 7 C -0.065 4.065 8 C -0.550 4.550 9 H 0.085 0.915 10 C -0.137 4.137 11 N -0.531 5.531 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.195 1.195 16 C 0.335 3.665 17 O -0.388 6.388 18 N -0.351 5.351 19 C -0.026 4.026 20 C -0.173 4.173 21 C -0.147 4.147 22 C -0.146 4.146 23 H 0.121 0.879 24 C 0.310 3.690 25 N -0.420 5.420 26 O -0.413 6.413 27 C 0.011 3.989 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.229 0.771 45 H 0.232 0.768 46 H 0.094 0.906 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.441 5.013 10.056 24.207 hybrid contribution -0.575 -0.846 -1.106 1.507 sum -22.016 4.167 8.950 24.128 Atomic orbital electron populations 1.22077 0.95511 1.01384 1.01862 1.21237 0.95046 0.98077 0.96027 1.21977 1.03865 0.94008 1.00980 1.23417 1.00701 1.02031 0.95975 0.88694 1.87065 0.97821 1.71230 1.45123 1.21142 1.00567 0.94792 0.90006 1.20648 0.89465 1.32467 1.12370 0.91468 1.24937 0.98826 0.94894 0.95085 1.69948 1.35180 1.32772 1.15247 0.86366 0.84297 0.78809 0.77304 1.20364 1.20992 1.19498 1.19883 0.78738 0.84446 0.83390 1.90686 1.56451 1.23507 1.68168 1.48020 1.32376 1.31269 1.23393 1.21930 0.91373 0.87928 1.01360 1.21984 0.95866 1.02391 0.97107 1.21522 0.99023 0.96004 0.98155 1.21792 0.98013 0.99527 0.95281 0.87885 1.20509 0.82083 0.76417 0.90010 1.43878 1.10777 1.69665 1.17665 1.90786 1.54452 1.53323 1.42730 1.21351 0.91658 1.00586 0.85325 0.92778 0.92595 0.92217 0.89491 0.92142 0.90129 0.93489 0.94844 0.94342 0.92547 0.88703 0.91065 0.90695 0.89975 0.91193 0.90922 0.77073 0.76811 0.90575 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.42 37.15 0.28 -1.44 16 2 C -0.08 -1.29 2.65 -90.62 -0.24 -1.53 16 3 C -0.15 -2.50 8.48 37.16 0.32 -2.19 16 4 C -0.09 -1.54 2.04 -27.88 -0.06 -1.59 16 5 H 0.09 1.48 5.79 -51.92 -0.30 1.18 16 6 S -0.24 -5.41 19.19 -107.50 -2.06 -7.48 16 7 C 0.08 2.09 5.39 36.01 0.19 2.28 16 8 C -0.51 -14.34 9.13 -34.44 -0.31 -14.65 16 9 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 10 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 11 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 12 Si 0.91 21.43 29.54 -169.99 -5.02 16.40 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.55 9.08 5.01 -10.98 -0.06 9.02 16 17 O -0.51 -10.28 14.09 5.56 0.08 -10.20 16 18 N -0.62 -7.76 2.80 -172.50 -0.48 -8.24 16 19 C 0.10 0.90 5.34 -3.71 -0.02 0.88 16 20 C -0.14 -0.84 6.08 -26.61 -0.16 -1.01 16 21 C -0.11 -0.63 5.07 -26.69 -0.14 -0.77 16 22 C -0.12 -1.03 2.69 -91.43 -0.25 -1.27 16 23 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 24 C 0.53 4.85 7.43 -10.99 -0.08 4.77 16 25 N -0.86 -4.23 8.76 31.22 0.27 -3.96 16 26 O -0.54 -7.50 16.77 5.55 0.09 -7.41 16 27 C 0.13 1.62 5.09 -3.49 -0.02 1.60 16 28 H 0.05 0.60 6.13 -51.93 -0.32 0.29 16 29 H 0.06 0.55 6.84 -51.92 -0.36 0.19 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.49 6.91 -51.92 -0.36 1.13 16 32 H 0.06 1.04 6.19 -51.93 -0.32 0.72 16 33 H 0.08 1.55 6.93 -51.93 -0.36 1.19 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.03 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.04 1.01 7.13 -51.92 -0.37 0.63 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.09 0.92 3.81 -51.93 -0.20 0.73 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 6.71 -51.93 -0.35 0.13 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.24 7.53 -51.93 -0.39 -0.15 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.40 0.80 8.23 -40.82 -0.34 0.47 16 45 H 0.40 1.69 8.93 -40.82 -0.36 1.32 16 46 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 47 H 0.10 1.49 7.00 -51.93 -0.36 1.12 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -34.51 372.15 -8.72 -43.23 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.30 Total: 1.05 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.64 Total: -4.15 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.53 Total: -37.05 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -2.06 Total: -7.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.51 -8.72 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.233 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds