Wall clock time and date at job start Tue Mar 31 2020 16:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47454 * 2 1 4 4 C 1.53002 * 109.47079 * 120.00117 * 2 1 3 5 5 H 1.09004 * 109.47255 * 59.70195 * 4 2 1 6 6 S 1.81400 * 109.47066 * 179.70646 * 4 2 1 7 7 C 1.81401 * 102.99840 * 294.99464 * 6 4 2 8 8 C 1.50699 * 109.47253 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99966 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99975 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00100 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99783 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46946 * 89.99743 * 12 10 8 14 14 H 1.48503 * 109.47213 * 209.99865 * 12 10 8 15 15 H 1.48497 * 109.47235 * 329.99588 * 12 10 8 16 16 C 1.50701 * 109.46847 * 299.70139 * 4 2 1 17 17 O 1.21274 * 120.00159 * 282.05744 * 16 4 2 18 18 N 1.34783 * 119.99603 * 102.06043 * 16 4 2 19 19 C 1.46924 * 120.63331 * 354.78876 * 18 16 4 20 20 C 1.53194 * 108.77824 * 233.58940 * 19 18 16 21 21 C 1.53041 * 109.30740 * 305.36423 * 20 19 18 22 22 C 1.53047 * 109.53877 * 61.36706 * 21 20 19 23 23 H 1.08994 * 109.49542 * 58.58441 * 22 21 20 24 24 C 1.50697 * 109.49413 * 178.64770 * 22 21 20 25 25 N 1.34775 * 120.00667 * 299.99602 * 24 22 21 26 26 O 1.21285 * 120.00116 * 120.00158 * 24 22 21 27 27 C 1.46925 * 120.62759 * 174.51121 * 18 16 4 28 28 H 1.09002 * 109.47346 * 301.12357 * 1 2 3 29 29 H 1.09008 * 109.47496 * 181.12024 * 1 2 3 30 30 H 1.09006 * 109.47240 * 61.12577 * 1 2 3 31 31 H 1.09009 * 109.47395 * 239.99714 * 2 1 3 32 32 H 1.08999 * 109.47059 * 59.99454 * 3 2 1 33 33 H 1.09000 * 109.47138 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46611 * 300.00034 * 3 2 1 35 35 H 1.08999 * 109.47603 * 300.00561 * 7 6 4 36 36 H 1.09004 * 109.47088 * 60.00084 * 7 6 4 37 37 H 0.97004 * 119.99678 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.58511 * 353.37437 * 19 18 16 39 39 H 1.08999 * 109.58361 * 113.65501 * 19 18 16 40 40 H 1.08997 * 109.49910 * 65.31193 * 20 19 18 41 41 H 1.08997 * 109.49628 * 185.41479 * 20 19 18 42 42 H 1.09004 * 109.45578 * 181.38164 * 21 20 19 43 43 H 1.08992 * 109.46294 * 301.35699 * 21 20 19 44 44 H 0.97007 * 119.99567 * 0.02562 * 25 24 22 45 45 H 0.97001 * 120.00569 * 180.02562 * 25 24 22 46 46 H 1.09001 * 109.58444 * 246.20220 * 27 18 16 47 47 H 1.09004 * 109.58610 * 6.62586 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6722 -1.7474 1.2519 6 16 3.8539 -0.7289 1.2449 7 6 4.2542 -1.7470 -0.2022 8 6 5.7508 -1.8515 -0.3444 9 1 6.3966 -1.3547 0.3645 10 6 6.2956 -2.5803 -1.3803 11 7 5.5092 -3.1848 -2.2438 12 14 8.1508 -2.7092 -1.5570 13 1 8.6393 -3.8891 -0.7991 14 1 8.5019 -2.8624 -2.9917 15 1 8.7858 -1.4787 -1.0207 16 6 1.5436 -0.0066 2.4797 17 8 2.0819 1.0169 2.8450 18 7 0.5015 -0.5050 3.1741 19 6 -0.2330 -1.6787 2.6826 20 6 -1.7244 -1.3350 2.6164 21 6 -2.1887 -0.8307 3.9847 22 6 -1.4163 0.4386 4.3515 23 1 -1.5809 1.1981 3.5873 24 6 -1.8976 0.9529 5.6837 25 7 -3.1897 1.3005 5.8452 26 8 -1.1221 1.0541 6.6107 27 6 0.0821 0.1116 4.4401 28 1 -0.3634 0.5312 0.8797 29 1 -0.3634 -1.0275 0.0201 30 1 -0.3634 0.4963 -0.8999 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 3.8313 -2.7433 -0.0737 36 1 3.8350 -1.2871 -1.0971 37 1 5.8926 -3.6973 -2.9728 38 1 0.1253 -1.9437 1.6878 39 1 -0.0787 -2.5170 3.3619 40 1 -1.8861 -0.5587 1.8686 41 1 -2.2913 -2.2257 2.3454 42 1 -3.2552 -0.6087 3.9471 43 1 -2.0038 -1.5980 4.7364 44 1 -3.8100 1.2193 5.1038 45 1 -3.4993 1.6319 6.7026 46 1 0.2595 -0.5831 5.2611 47 1 0.6484 1.0282 4.6053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:17 Heat of formation + Delta-G solvation = -117.182676 kcal Electronic energy + Delta-G solvation = -27009.853158 eV Core-core repulsion = 23316.955394 eV Total energy + Delta-G solvation = -3692.897764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80830 -40.56017 -38.18612 -36.88440 -35.28071 -34.94577 -33.65804 -32.26629 -30.65345 -29.48386 -28.06291 -26.32829 -25.49088 -25.04983 -22.91329 -21.91294 -20.84781 -19.86934 -18.92406 -18.49876 -18.15340 -17.75223 -17.53474 -16.86048 -16.48684 -16.19252 -15.94945 -15.51344 -15.40392 -15.19608 -14.87354 -14.61449 -14.52021 -14.37901 -14.13784 -14.03957 -13.82453 -13.61042 -13.54768 -12.94633 -12.75947 -12.62361 -12.57848 -12.33320 -12.23150 -12.13188 -11.94162 -11.85709 -11.67071 -11.60422 -11.56495 -10.97652 -10.79301 -10.73061 -10.66232 -10.48014 -9.71389 -8.44284 -8.33494 -6.45304 0.63344 1.39519 1.40139 1.52126 1.58854 1.61157 1.89384 1.99514 2.36828 2.64989 3.01221 3.34471 3.57050 3.63650 3.74280 3.81779 3.88075 4.03786 4.15470 4.20421 4.25319 4.34834 4.49734 4.57428 4.63426 4.74826 4.79446 4.82457 4.92566 4.94394 4.96205 4.98993 4.99613 5.08121 5.08627 5.16098 5.30131 5.41568 5.45249 5.51277 5.57402 5.89312 5.90140 6.23490 6.44109 6.60542 7.05671 7.22001 7.33495 8.78282 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.002838 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.454985 B = 9863.784205 C =10111.348013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.074 4.074 5 H 0.113 0.887 6 S -0.282 6.282 7 C 0.099 3.901 8 C -0.538 4.538 9 H 0.055 0.945 10 C 0.021 3.979 11 N -0.919 5.919 12 Si 0.971 3.029 13 H -0.269 1.269 14 H -0.272 1.272 15 H -0.271 1.271 16 C 0.547 3.453 17 O -0.558 6.558 18 N -0.602 5.602 19 C 0.084 3.916 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.113 4.113 23 H 0.115 0.885 24 C 0.524 3.476 25 N -0.831 5.831 26 O -0.595 6.595 27 C 0.133 3.867 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.018 0.982 36 H 0.023 0.977 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.419 0.581 45 H 0.408 0.592 46 H 0.069 0.931 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.327 3.310 8.332 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.206 4.206 5 H 0.131 0.869 6 S -0.053 6.053 7 C -0.049 4.049 8 C -0.577 4.577 9 H 0.073 0.927 10 C -0.180 4.180 11 N -0.558 5.558 12 Si 0.794 3.206 13 H -0.194 1.194 14 H -0.197 1.197 15 H -0.196 1.196 16 C 0.334 3.666 17 O -0.436 6.436 18 N -0.335 5.335 19 C -0.038 4.038 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.135 4.135 23 H 0.132 0.868 24 C 0.309 3.691 25 N -0.395 5.395 26 O -0.475 6.475 27 C 0.010 3.990 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.251 0.749 45 H 0.240 0.760 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.732 4.220 9.563 26.850 hybrid contribution 0.296 -0.597 -0.890 1.111 sum -24.435 3.624 8.674 26.181 Atomic orbital electron populations 1.22020 0.91485 1.03301 1.03018 1.21242 0.98307 0.96636 0.94180 1.21884 1.01524 0.95184 1.01653 1.23482 0.95842 1.03636 0.97629 0.86861 1.87052 1.04114 1.70580 1.43575 1.20750 0.99339 0.94149 0.90631 1.20932 0.90811 1.33149 1.12805 0.92693 1.25786 1.03599 0.94169 0.94476 1.70027 1.37152 1.32992 1.15612 0.85361 0.78508 0.78857 0.77842 1.19379 1.19704 1.19550 1.19738 0.79504 0.83997 0.83370 1.90672 1.58178 1.25442 1.69309 1.48026 1.31145 1.31618 1.22747 1.22309 0.93476 0.86773 1.01208 1.21987 0.93118 1.03939 0.97461 1.21576 1.00610 0.94213 0.97780 1.21691 0.95198 1.01421 0.95192 0.86756 1.20660 0.82855 0.76037 0.89562 1.43663 1.09511 1.67602 1.18713 1.90774 1.56214 1.56033 1.44475 1.21310 0.94331 0.98789 0.84607 0.92154 0.90278 0.90540 0.91254 0.92798 0.93709 0.91311 0.96387 0.95884 0.91990 0.88970 0.90139 0.90039 0.87024 0.87480 0.91103 0.74868 0.76022 0.91264 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.42 71.98 0.53 -2.27 16 2 C -0.08 -2.56 2.65 -10.80 -0.03 -2.59 16 3 C -0.14 -4.91 8.48 71.98 0.61 -4.29 16 4 C -0.07 -2.58 2.04 29.85 0.06 -2.52 16 5 H 0.11 3.49 5.79 -2.39 -0.01 3.47 16 6 S -0.28 -13.29 19.19 -56.49 -1.08 -14.37 16 7 C 0.10 5.25 5.39 71.24 0.38 5.63 16 8 C -0.54 -31.31 9.13 25.60 0.23 -31.08 16 9 H 0.05 3.26 7.71 -2.91 -0.02 3.24 16 10 C 0.02 1.19 5.46 84.66 0.46 1.65 16 11 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 12 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 C 0.55 18.36 5.01 87.66 0.44 18.80 16 17 O -0.56 -23.36 14.09 -3.01 -0.04 -23.40 16 18 N -0.60 -14.71 2.80 -818.06 -2.29 -17.00 16 19 C 0.08 1.33 5.34 86.36 0.46 1.79 16 20 C -0.13 -0.99 6.08 30.67 0.19 -0.81 16 21 C -0.10 -0.76 5.07 30.62 0.16 -0.60 16 22 C -0.11 -1.63 2.69 -11.32 -0.03 -1.66 16 23 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 24 C 0.52 8.86 7.43 87.66 0.65 9.52 16 25 N -0.83 -5.78 8.76 -173.53 -1.52 -7.30 16 26 O -0.59 -16.79 16.77 -3.04 -0.05 -16.84 16 27 C 0.13 3.22 5.09 86.51 0.44 3.66 16 28 H 0.06 1.16 6.13 -2.39 -0.01 1.14 16 29 H 0.08 1.24 6.84 -2.38 -0.02 1.22 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 2.40 6.91 -2.38 -0.02 2.38 16 32 H 0.05 1.89 6.19 -2.39 -0.01 1.87 16 33 H 0.04 1.82 6.93 -2.39 -0.02 1.80 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.02 1.26 7.13 -2.39 -0.02 1.25 16 37 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.09 1.53 3.81 -2.39 -0.01 1.52 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 0.60 6.71 -2.39 -0.02 0.59 16 41 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.11 0.08 7.53 -2.39 -0.02 0.06 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.42 -0.12 8.23 -92.70 -0.76 -0.89 16 45 H 0.41 2.40 8.93 -92.71 -0.83 1.57 16 46 H 0.07 1.77 7.97 -2.39 -0.02 1.75 16 47 H 0.06 2.05 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -80.81 372.15 1.30 -79.52 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.59 Total: 10.82 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.56 Total: -4.76 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.52 Total: -77.25 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.09 Total: -40.24 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -13.29 SS G_CDS: -1.08 Total: -14.37 kcal Total: -80.81 1.30 -79.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.667 kcal (2) G-P(sol) polarization free energy of solvation -80.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds