Wall clock time and date at job start Tue Mar 31 2020 15:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99852 * 2 1 4 4 C 1.53001 * 109.47088 * 125.00573 * 3 2 1 5 5 C 1.52994 * 109.47207 * 179.97438 * 4 3 2 6 6 H 1.09004 * 110.53458 * 307.82871 * 5 4 3 7 7 N 1.47302 * 110.73119 * 70.74609 * 5 4 3 8 8 C 1.34532 * 106.61945 * 118.36935 * 7 5 4 9 9 O 1.21533 * 123.77632 * 180.21036 * 8 7 5 10 10 N 1.33795 * 112.45470 * 0.38371 * 8 7 5 11 11 C 1.46493 * 124.17696 * 179.86199 * 10 8 7 12 12 H 1.09004 * 109.47071 * 180.51584 * 11 10 8 13 13 C 1.53007 * 109.47158 * 60.51923 * 11 10 8 14 14 C 1.50697 * 109.47022 * 64.99965 * 13 11 10 15 15 H 1.08008 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00131 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99919 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47243 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46699 * 120.00028 * 18 16 14 21 21 H 1.48497 * 109.47154 * 240.00053 * 18 16 14 22 22 C 1.50697 * 109.47422 * 300.52010 * 11 10 8 23 23 C 1.38237 * 119.99907 * 321.71340 * 22 11 10 24 24 C 1.38235 * 120.00069 * 179.78830 * 23 22 11 25 25 C 1.38233 * 119.99834 * 0.44151 * 24 23 22 26 26 C 1.38235 * 120.00239 * 359.81728 * 25 24 23 27 27 C 1.38235 * 120.00008 * 141.98960 * 22 11 10 28 28 C 1.34767 * 111.64148 * 359.59400 * 10 8 7 29 29 O 1.21238 * 127.15475 * 180.25765 * 28 10 8 30 30 H 1.07996 * 119.99801 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00129 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99568 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47315 * 5.00311 * 3 2 1 34 34 H 1.09000 * 109.46740 * 245.00203 * 3 2 1 35 35 H 1.09007 * 109.46851 * 59.99649 * 4 3 2 36 36 H 1.09003 * 109.46984 * 299.99987 * 4 3 2 37 37 H 0.96998 * 126.69434 * 298.55723 * 7 5 4 38 38 H 1.08993 * 109.46945 * 305.00209 * 13 11 10 39 39 H 1.08998 * 109.47351 * 184.99638 * 13 11 10 40 40 H 0.97006 * 119.99518 * 0.02562 * 17 16 14 41 41 H 1.07994 * 119.99808 * 359.97438 * 23 22 11 42 42 H 1.07999 * 119.99932 * 180.27358 * 24 23 22 43 43 H 1.08000 * 119.99978 * 179.83224 * 25 24 23 44 44 H 1.07998 * 120.00522 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00446 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0352 1.3331 1.1816 5 6 3.8006 2.6578 1.1812 6 1 4.2527 2.8379 0.2059 7 7 2.9134 3.7727 1.5549 8 6 3.4155 4.3018 2.6853 9 8 2.9181 5.2446 3.2691 10 7 4.5259 3.6764 3.0930 11 6 5.2842 4.0435 4.2914 12 1 6.1470 3.3849 4.3912 13 6 4.3893 3.9021 5.5244 14 6 4.0208 2.4532 5.7140 15 1 4.3877 1.7078 5.0239 16 6 3.2142 2.0793 6.7680 17 7 2.7671 2.9869 7.6081 18 14 2.7568 0.2834 7.0026 19 1 3.3837 -0.5312 5.9310 20 1 3.2429 -0.1823 8.3263 21 1 1.2806 0.1361 6.9376 22 6 5.7528 5.4708 4.1718 23 6 6.1802 5.9579 2.9508 24 6 6.6059 7.2685 2.8402 25 6 6.6127 8.0892 3.9526 26 6 6.1903 7.6005 5.1747 27 6 5.7605 6.2912 5.2844 28 6 4.8571 2.6635 2.2681 29 8 5.8031 1.9127 2.3737 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 3.7401 0.5065 1.0919 36 1 2.4774 1.2355 2.1130 37 1 2.1201 4.0663 1.0802 38 1 3.4836 4.4922 5.3855 39 1 4.9243 4.2590 6.4045 40 1 3.0044 3.9196 7.4859 41 1 6.1788 5.3156 2.0827 42 1 6.9357 7.6503 1.8854 43 1 6.9479 9.1122 3.8667 44 1 6.1960 8.2415 6.0439 45 1 5.4303 5.9095 6.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419939661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:11 Heat of formation + Delta-G solvation = -6.565989 kcal Electronic energy + Delta-G solvation = -28760.700462 eV Core-core repulsion = 24937.155446 eV Total energy + Delta-G solvation = -3823.545016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -42.12605 -38.99603 -38.10981 -36.72587 -35.43142 -35.05618 -33.10343 -31.65669 -30.77535 -30.55026 -28.54563 -26.81125 -24.90455 -23.18220 -22.97782 -21.97957 -21.71114 -20.96036 -19.96353 -19.33191 -17.73097 -17.16726 -16.83521 -16.31045 -15.79378 -15.39656 -15.25617 -15.16342 -14.64219 -14.38521 -14.09186 -13.94104 -13.76076 -13.72231 -13.53705 -13.19368 -12.99878 -12.70919 -12.49006 -12.05182 -11.98697 -11.74805 -11.40599 -11.18124 -11.10522 -10.91125 -10.82000 -10.66230 -10.38697 -10.14323 -10.12697 -9.73281 -9.46713 -9.21600 -9.06125 -8.63309 -8.58402 -8.33682 -8.32249 -6.37541 -4.07099 1.61791 1.70977 1.98341 2.17406 2.68248 3.42084 3.42293 3.45722 3.55502 3.59278 4.11492 4.23178 4.49962 4.51947 4.77830 4.88768 5.06068 5.11504 5.15034 5.24268 5.25353 5.26494 5.37528 5.42895 5.52993 5.61349 5.74084 5.76635 5.83966 5.89441 6.05076 6.10482 6.12915 6.18912 6.30429 6.40883 6.48240 6.61545 6.70922 6.78155 6.97465 7.04861 7.19381 7.30436 7.39945 7.64612 7.79995 8.11520 8.43198 8.61733 8.85187 9.63886 11.03236 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.005578 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.102193 B = 5018.642838 C = 7244.544334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C -0.090 4.090 4 C -0.118 4.118 5 C 0.096 3.904 6 H 0.120 0.880 7 N -0.733 5.733 8 C 0.707 3.293 9 O -0.529 6.529 10 N -0.546 5.546 11 C 0.197 3.803 12 H 0.107 0.893 13 C -0.003 4.003 14 C -0.600 4.600 15 H 0.048 0.952 16 C 0.020 3.980 17 N -0.909 5.909 18 Si 1.068 2.932 19 H -0.289 1.289 20 H -0.286 1.286 21 H -0.287 1.287 22 C -0.077 4.077 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.097 4.097 28 C 0.526 3.474 29 O -0.475 6.475 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.433 0.567 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.270 0.730 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 2.003 -16.259 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.171 4.171 3 C -0.127 4.127 4 C -0.157 4.157 5 C -0.013 4.013 6 H 0.137 0.863 7 N -0.399 5.399 8 C 0.408 3.592 9 O -0.400 6.400 10 N -0.289 5.289 11 C 0.096 3.904 12 H 0.125 0.875 13 C -0.040 4.040 14 C -0.638 4.638 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.545 5.545 18 Si 0.897 3.103 19 H -0.215 1.215 20 H -0.212 1.212 21 H -0.214 1.214 22 C -0.078 4.078 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.115 4.115 28 C 0.312 3.688 29 O -0.346 6.346 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.277 0.723 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.662 1.094 -14.798 14.931 hybrid contribution 0.402 1.047 -1.227 1.662 sum 2.064 2.141 -16.025 16.299 Atomic orbital electron populations 1.23866 0.95993 1.01889 1.01229 1.22908 0.96037 0.98393 0.99780 1.20735 0.98021 0.95898 0.98037 1.21783 0.98678 0.94749 1.00460 1.22041 0.90571 0.89574 0.99102 0.86259 1.45538 1.31299 1.34874 1.28177 1.15804 0.80279 0.82314 0.80805 1.90983 1.62605 1.28110 1.58348 1.46230 1.25709 1.31022 1.25970 1.20309 0.94938 0.90958 0.84206 0.87501 1.19750 0.95152 0.98999 0.90136 1.21944 1.34766 0.92116 1.14987 0.93377 1.25726 0.93832 1.06048 0.92818 1.70714 1.43603 1.03060 1.37127 0.83559 0.76376 0.74429 0.75969 1.21477 1.21195 1.21378 1.20210 0.97703 0.96025 0.93863 1.20838 0.99663 0.95746 0.96922 1.20970 1.00931 0.93941 0.98323 1.21045 1.01090 0.99338 0.93141 1.21130 0.99488 0.95664 0.97534 1.21285 0.97728 0.93260 0.99242 1.20704 0.85403 0.79713 0.82972 1.90759 1.29298 1.40441 1.74099 0.88541 0.88581 0.87189 0.91351 0.90617 0.89218 0.89746 0.72341 0.94440 0.95342 0.91940 0.87441 0.86655 0.86581 0.86187 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 14.32 29.01 0.42 -1.36 16 2 C -0.15 -1.43 9.52 -36.03 -0.34 -1.78 16 3 C -0.09 -0.79 5.60 -27.88 -0.16 -0.94 16 4 C -0.12 -1.38 4.94 -26.73 -0.13 -1.51 16 5 C 0.10 1.20 3.64 -68.22 -0.25 0.96 16 6 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 7 N -0.73 -10.02 6.07 -59.20 -0.36 -10.37 16 8 C 0.71 13.51 7.73 -88.01 -0.68 12.83 16 9 O -0.53 -12.06 15.71 5.34 0.08 -11.97 16 10 N -0.55 -10.65 1.48 -114.83 -0.17 -10.82 16 11 C 0.20 4.20 2.50 -69.08 -0.17 4.03 16 12 H 0.11 2.34 7.64 -51.93 -0.40 1.95 16 13 C 0.00 -0.08 2.96 -27.88 -0.08 -0.16 16 14 C -0.60 -16.77 8.84 -34.44 -0.30 -17.07 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 16 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 17 N -0.91 -27.76 13.65 55.43 0.76 -27.00 16 18 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.08 -1.48 4.71 -104.62 -0.49 -1.97 16 23 C -0.11 -1.91 9.04 -39.58 -0.36 -2.27 16 24 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 25 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.12 -1.87 10.05 -39.58 -0.40 -2.26 16 27 C -0.10 -1.79 9.12 -39.58 -0.36 -2.15 16 28 C 0.53 9.21 7.66 -10.56 -0.08 9.13 16 29 O -0.48 -9.34 17.51 5.59 0.10 -9.24 16 30 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.10 0.84 7.84 -52.48 -0.41 0.42 16 32 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.07 0.57 7.34 -51.93 -0.38 0.19 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.43 4.65 8.62 -40.82 -0.35 4.29 16 38 H 0.04 1.05 6.46 -51.93 -0.34 0.71 16 39 H 0.03 0.73 6.17 -51.93 -0.32 0.41 16 40 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 41 H 0.11 1.71 7.66 -52.49 -0.40 1.31 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.13 2.56 5.88 -52.49 -0.31 2.26 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -34.57 377.26 -9.49 -44.06 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.21 Total: 7.50 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -4.29 Total: -8.47 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.23 Total: -48.19 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.18 Total: -21.22 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.57 -9.49 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.491 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds