Wall clock time and date at job start Tue Mar 31 2020 15:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99852 * 2 1 4 4 C 1.53001 * 109.47088 * 125.00573 * 3 2 1 5 5 C 1.52994 * 109.47207 * 179.97438 * 4 3 2 6 6 H 1.09004 * 110.53458 * 307.82871 * 5 4 3 7 7 N 1.47302 * 110.73119 * 70.74609 * 5 4 3 8 8 C 1.34532 * 106.61945 * 118.36935 * 7 5 4 9 9 O 1.21533 * 123.77632 * 180.21036 * 8 7 5 10 10 N 1.33795 * 112.45470 * 0.38371 * 8 7 5 11 11 C 1.46493 * 124.17696 * 179.86199 * 10 8 7 12 12 H 1.09004 * 109.47071 * 180.51584 * 11 10 8 13 13 C 1.53007 * 109.47158 * 60.51923 * 11 10 8 14 14 C 1.50697 * 109.47022 * 64.99965 * 13 11 10 15 15 H 1.08008 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.37881 * 120.00131 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99919 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47243 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46699 * 120.00028 * 18 16 14 21 21 H 1.48497 * 109.47154 * 240.00053 * 18 16 14 22 22 C 1.50697 * 109.47422 * 300.52010 * 11 10 8 23 23 C 1.38237 * 119.99907 * 321.71340 * 22 11 10 24 24 C 1.38235 * 120.00069 * 179.78830 * 23 22 11 25 25 C 1.38233 * 119.99834 * 0.44151 * 24 23 22 26 26 C 1.38235 * 120.00239 * 359.81728 * 25 24 23 27 27 C 1.38235 * 120.00008 * 141.98960 * 22 11 10 28 28 C 1.34767 * 111.64148 * 359.59400 * 10 8 7 29 29 O 1.21238 * 127.15475 * 180.25765 * 28 10 8 30 30 H 1.07996 * 119.99801 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00129 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99568 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47315 * 5.00311 * 3 2 1 34 34 H 1.09000 * 109.46740 * 245.00203 * 3 2 1 35 35 H 1.09007 * 109.46851 * 59.99649 * 4 3 2 36 36 H 1.09003 * 109.46984 * 299.99987 * 4 3 2 37 37 H 0.96998 * 126.69434 * 298.55723 * 7 5 4 38 38 H 1.08993 * 109.46945 * 305.00209 * 13 11 10 39 39 H 1.08998 * 109.47351 * 184.99638 * 13 11 10 40 40 H 0.97006 * 119.99518 * 0.02562 * 17 16 14 41 41 H 1.07994 * 119.99808 * 359.97438 * 23 22 11 42 42 H 1.07999 * 119.99932 * 180.27358 * 24 23 22 43 43 H 1.08000 * 119.99978 * 179.83224 * 25 24 23 44 44 H 1.07998 * 120.00522 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00446 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0352 1.3331 1.1816 5 6 3.8006 2.6578 1.1812 6 1 4.2527 2.8379 0.2059 7 7 2.9134 3.7727 1.5549 8 6 3.4155 4.3018 2.6853 9 8 2.9181 5.2446 3.2691 10 7 4.5259 3.6764 3.0930 11 6 5.2842 4.0435 4.2914 12 1 6.1470 3.3849 4.3912 13 6 4.3893 3.9021 5.5244 14 6 4.0208 2.4532 5.7140 15 1 4.3877 1.7078 5.0239 16 6 3.2142 2.0793 6.7680 17 7 2.7671 2.9869 7.6081 18 14 2.7568 0.2834 7.0026 19 1 3.3837 -0.5312 5.9310 20 1 3.2429 -0.1823 8.3263 21 1 1.2806 0.1361 6.9376 22 6 5.7528 5.4708 4.1718 23 6 6.1802 5.9579 2.9508 24 6 6.6059 7.2685 2.8402 25 6 6.6127 8.0892 3.9526 26 6 6.1903 7.6005 5.1747 27 6 5.7605 6.2912 5.2844 28 6 4.8571 2.6635 2.2681 29 8 5.8031 1.9127 2.3737 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 3.7401 0.5065 1.0919 36 1 2.4774 1.2355 2.1130 37 1 2.1201 4.0663 1.0802 38 1 3.4836 4.4922 5.3855 39 1 4.9243 4.2590 6.4045 40 1 3.0044 3.9196 7.4859 41 1 6.1788 5.3156 2.0827 42 1 6.9357 7.6503 1.8854 43 1 6.9479 9.1122 3.8667 44 1 6.1960 8.2415 6.0439 45 1 5.4303 5.9095 6.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419939661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:09 Heat of formation + Delta-G solvation = -27.629031 kcal Electronic energy + Delta-G solvation = -28761.613824 eV Core-core repulsion = 24937.155446 eV Total energy + Delta-G solvation = -3824.458378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.54443 -40.30800 -39.60538 -37.88258 -37.04582 -36.21133 -35.00633 -33.05305 -31.92156 -31.73776 -30.27421 -27.92962 -26.67520 -24.88007 -24.29973 -23.29214 -23.06217 -22.21574 -21.04199 -20.47855 -19.14124 -19.02225 -18.30315 -17.76800 -17.10099 -16.67436 -16.53004 -16.33154 -16.07557 -15.75198 -15.64263 -15.28696 -15.20281 -15.12798 -14.95373 -14.42665 -14.32119 -14.09855 -13.61928 -13.53534 -13.35838 -13.29327 -12.95858 -12.67627 -12.53157 -12.13419 -12.04615 -12.01936 -11.91482 -11.88467 -11.67178 -11.16637 -10.84901 -10.65832 -10.59956 -10.41636 -10.16241 -9.88017 -9.67766 -8.73099 -6.42427 0.32568 0.43665 0.60850 1.26830 1.43501 1.45629 1.53096 1.69194 2.06424 2.23574 2.48260 2.83372 2.95025 3.12406 3.53470 3.66216 3.83258 3.90006 4.04165 4.07425 4.13649 4.20540 4.29122 4.37730 4.43523 4.46016 4.52829 4.55689 4.59905 4.68803 4.81477 4.96460 5.00917 5.07316 5.12612 5.13477 5.23885 5.31086 5.47805 5.53860 5.64459 5.80221 5.86486 5.87609 5.92133 6.05520 6.11873 6.19167 6.40397 6.50562 7.19499 7.37091 8.67514 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.005578 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.102193 B = 5018.642838 C = 7244.544334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.082 4.082 4 C -0.113 4.113 5 C 0.112 3.888 6 H 0.174 0.826 7 N -0.707 5.707 8 C 0.700 3.300 9 O -0.574 6.574 10 N -0.555 5.555 11 C 0.204 3.796 12 H 0.090 0.910 13 C 0.011 3.989 14 C -0.603 4.603 15 H 0.040 0.960 16 C -0.032 4.032 17 N -0.932 5.932 18 Si 1.113 2.887 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.278 1.278 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.127 4.127 28 C 0.513 3.487 29 O -0.502 6.502 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.450 0.550 38 H 0.005 0.995 39 H 0.013 0.987 40 H 0.255 0.745 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 2.282 -19.462 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.182 4.182 3 C -0.119 4.119 4 C -0.152 4.152 5 C 0.004 3.996 6 H 0.191 0.809 7 N -0.373 5.373 8 C 0.400 3.600 9 O -0.450 6.450 10 N -0.299 5.299 11 C 0.102 3.898 12 H 0.108 0.892 13 C -0.027 4.027 14 C -0.641 4.641 15 H 0.059 0.941 16 C -0.230 4.230 17 N -0.569 5.569 18 Si 0.934 3.066 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.203 1.203 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.145 4.145 28 C 0.302 3.698 29 O -0.375 6.375 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.297 0.703 38 H 0.023 0.977 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.132 0.868 42 H 0.172 0.828 43 H 0.176 0.824 44 H 0.161 0.839 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.016 1.359 -18.060 18.223 hybrid contribution 0.336 1.001 -0.246 1.084 sum 2.352 2.360 -18.306 18.607 Atomic orbital electron populations 1.24029 0.96213 1.02439 1.01004 1.23058 0.96252 0.98936 0.99970 1.20725 0.97587 0.95891 0.97705 1.21760 0.98946 0.94081 1.00375 1.22280 0.88732 0.89513 0.99088 0.80916 1.45406 1.31507 1.34200 1.26202 1.16013 0.80135 0.82051 0.81760 1.90947 1.63781 1.30235 1.60035 1.46290 1.26064 1.31863 1.25658 1.19868 0.93496 0.92827 0.83632 0.89176 1.19468 0.94381 0.96892 0.91923 1.22206 1.34189 0.93209 1.14499 0.94115 1.27231 0.93640 1.09573 0.92570 1.70844 1.45121 1.02663 1.38300 0.83001 0.76797 0.69888 0.76890 1.19798 1.19965 1.20327 1.20064 0.99838 0.94801 0.95399 1.20970 0.99904 0.97191 0.95900 1.21429 0.99144 0.92669 1.00208 1.21530 0.99083 1.01071 0.91939 1.21431 0.98603 0.94399 0.99516 1.21248 0.99902 0.95157 0.98214 1.21608 0.86019 0.78491 0.83658 1.90734 1.30726 1.41016 1.74983 0.87992 0.88251 0.86793 0.90667 0.87671 0.88677 0.93124 0.70303 0.97656 0.96944 0.93543 0.86791 0.82812 0.82425 0.83869 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.16 -2.69 9.52 25.64 0.24 -2.44 16 3 C -0.08 -1.17 5.60 29.85 0.17 -1.00 16 4 C -0.11 -2.39 4.94 30.59 0.15 -2.24 16 5 C 0.11 2.52 3.64 44.37 0.16 2.68 16 6 H 0.17 2.26 8.14 -2.39 -0.02 2.24 16 7 N -0.71 -18.19 6.07 -459.64 -2.79 -20.98 16 8 C 0.70 27.11 7.73 179.44 1.39 28.50 16 9 O -0.57 -27.22 15.71 -3.82 -0.06 -27.28 16 10 N -0.56 -22.30 1.48 -754.47 -1.12 -23.42 16 11 C 0.20 9.28 2.50 44.25 0.11 9.39 16 12 H 0.09 4.27 7.64 -2.38 -0.02 4.25 16 13 C 0.01 0.58 2.96 29.85 0.09 0.67 16 14 C -0.60 -35.43 8.84 25.60 0.23 -35.20 16 15 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 16 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 17 N -0.93 -59.47 13.65 21.45 0.29 -59.17 16 18 Si 1.11 52.50 29.90 68.60 2.05 54.55 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.10 -4.01 4.71 -19.87 -0.09 -4.11 16 23 C -0.12 -4.02 9.04 22.27 0.20 -3.82 16 24 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 26 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 27 C -0.13 -4.95 9.12 22.27 0.20 -4.75 16 28 C 0.51 17.88 7.66 87.94 0.67 18.55 16 29 O -0.50 -19.86 17.51 -2.90 -0.05 -19.91 16 30 H 0.10 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.10 1.54 7.84 -2.91 -0.02 1.51 16 32 H 0.11 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.07 0.99 7.34 -2.39 -0.02 0.97 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.45 8.57 8.62 -92.71 -0.80 7.77 16 38 H 0.01 0.32 6.46 -2.39 -0.02 0.30 16 39 H 0.01 0.71 6.17 -2.39 -0.01 0.70 16 40 H 0.26 16.65 7.22 -92.70 -0.67 15.98 16 41 H 0.11 3.52 7.66 -2.91 -0.02 3.50 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 45 H 0.11 4.60 5.88 -2.91 -0.02 4.59 16 Total: -1.00 -81.31 377.26 4.26 -77.05 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.31 Total: 25.82 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.62 Total: -6.65 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.61 Total: -103.57 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.11 Total: -47.20 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.05 Total: 54.55 kcal Total: -81.31 4.26 -77.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -81.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds