Wall clock time and date at job start Tue Mar 31 2020 16:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81394 * 103.00187 * 2 1 4 4 C 1.52997 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.99964 * 177.99966 * 4 3 2 6 6 C 1.54333 * 109.98907 * 56.96381 * 4 3 2 7 7 C 1.55159 * 103.02009 * 218.66645 * 6 4 3 8 8 C 1.54907 * 101.58230 * 35.30719 * 7 6 4 9 9 N 1.47020 * 109.88265 * 299.09739 * 4 3 2 10 10 C 1.34777 * 125.64697 * 298.39314 * 9 4 3 11 11 O 1.21343 * 120.00010 * 3.81623 * 10 9 4 12 12 C 1.49448 * 119.99873 * 183.81982 * 10 9 4 13 13 O 1.21354 * 120.00171 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00233 * 180.02562 * 12 10 9 15 15 C 1.46499 * 120.00432 * 180.02562 * 14 12 10 16 16 C 1.53005 * 109.47420 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47090 * 59.99888 * 16 15 14 18 18 C 1.52998 * 109.47097 * 300.00010 * 16 15 14 19 19 C 1.50696 * 109.47098 * 179.97438 * 16 15 14 20 20 H 1.07995 * 120.00375 * 3.81857 * 19 16 15 21 21 C 1.37882 * 119.99839 * 183.81504 * 19 16 15 22 22 N 1.31513 * 119.99863 * 353.34616 * 21 19 16 23 23 Si 1.86793 * 119.99947 * 173.34815 * 21 19 16 24 24 H 1.48509 * 109.47386 * 89.99911 * 23 21 19 25 25 H 1.48504 * 109.47365 * 330.00299 * 23 21 19 26 26 H 1.48500 * 109.47256 * 209.99947 * 23 21 19 27 27 H 1.08998 * 109.46797 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.46939 * 59.99920 * 1 2 3 29 29 H 1.08994 * 109.46923 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46979 * 59.99603 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00479 * 3 2 1 32 32 H 1.08998 * 110.84919 * 100.19952 * 6 4 3 33 33 H 1.09002 * 110.67147 * 337.04531 * 6 4 3 34 34 H 1.09006 * 111.00088 * 277.23159 * 7 6 4 35 35 H 1.08997 * 111.03891 * 153.39702 * 7 6 4 36 36 H 1.09004 * 110.36768 * 204.15316 * 8 7 6 37 37 H 1.08990 * 110.45918 * 81.87526 * 8 7 6 38 38 H 0.97006 * 120.00256 * 359.97438 * 14 12 10 39 39 H 1.09000 * 109.47489 * 59.99773 * 15 14 12 40 40 H 1.08998 * 109.47219 * 299.99857 * 15 14 12 41 41 H 1.08994 * 109.47472 * 174.16632 * 17 16 15 42 42 H 1.09005 * 109.47052 * 294.16777 * 17 16 15 43 43 H 1.09006 * 109.46945 * 54.16271 * 17 16 15 44 44 H 1.09000 * 109.47227 * 305.81318 * 18 16 15 45 45 H 1.08997 * 109.47049 * 65.81261 * 18 16 15 46 46 H 1.08995 * 109.47122 * 185.81090 * 18 16 15 47 47 H 0.96996 * 120.00414 * 4.75921 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 1 3.9975 2.9991 -0.0351 6 6 4.3562 1.2136 -1.2149 7 6 5.6615 0.6060 -0.6365 8 6 5.2229 0.2403 0.8035 9 7 4.3145 1.3283 1.2090 10 6 4.0480 1.6974 2.4776 11 8 3.2243 2.5606 2.6980 12 6 4.7672 1.0434 3.6128 13 8 5.5914 0.1804 3.3923 14 7 4.5004 1.4120 4.8814 15 6 5.2058 0.7714 5.9941 16 6 4.7211 1.3687 7.3168 17 6 3.2165 1.1315 7.4625 18 6 5.0041 2.8722 7.3315 19 6 5.4462 0.7092 8.4614 20 1 6.2230 -0.0145 8.2633 21 6 5.1180 1.0298 9.7617 22 7 4.2673 2.0029 10.0042 23 14 5.8818 0.0820 11.1785 24 1 7.1430 0.7461 11.5956 25 1 6.1744 -1.3075 10.7440 26 1 4.9354 0.0540 12.3226 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2372 -0.8899 32 1 4.5807 1.9185 -2.0153 33 1 3.6897 0.4278 -1.5705 34 1 6.4641 1.3435 -0.6251 35 1 5.9589 -0.2834 -1.1921 36 1 6.0881 0.2020 1.4654 37 1 4.6979 -0.7148 0.8109 38 1 3.8419 2.1021 5.0577 39 1 6.2776 0.9407 5.8906 40 1 5.0045 -0.2998 5.9834 41 1 2.8901 1.4636 8.4479 42 1 2.6842 1.6933 6.6949 43 1 3.0035 0.0686 7.3482 44 1 6.0603 3.0451 7.1248 45 1 4.3995 3.3632 6.5691 46 1 4.7543 3.2793 8.3112 47 1 3.8183 2.4491 9.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422480556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:18 Heat of formation + Delta-G solvation = -62.890979 kcal Electronic energy + Delta-G solvation = -26865.107122 eV Core-core repulsion = 23174.563623 eV Total energy + Delta-G solvation = -3690.543499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75926 -38.96006 -37.54533 -36.84105 -33.71242 -32.03758 -31.61887 -30.59292 -29.19222 -26.61310 -26.13208 -26.05182 -25.26556 -23.86298 -22.06730 -21.08882 -19.67128 -18.92986 -17.85737 -17.28394 -16.71169 -16.31822 -15.95039 -15.43347 -15.15514 -14.85145 -14.34504 -14.12656 -14.00631 -13.76933 -13.74715 -13.65731 -13.30994 -13.01200 -12.76534 -12.73565 -12.65460 -12.50463 -11.96142 -11.66654 -11.55523 -11.49260 -11.29785 -11.09452 -10.99881 -10.95665 -10.63941 -10.60494 -10.12686 -10.11415 -9.90891 -9.59396 -9.27714 -8.89239 -8.63977 -8.52194 -8.24420 -7.83495 -6.27346 -4.12447 1.40966 1.64646 2.33371 2.42517 3.42500 3.44161 3.46309 3.61624 3.69298 4.25632 4.27531 4.50246 4.51770 4.73480 4.85210 4.86578 4.88354 4.90835 5.04094 5.16957 5.31509 5.43006 5.46803 5.53104 5.63274 5.70756 5.80020 5.91207 5.99153 6.08899 6.09571 6.24600 6.51766 6.58301 6.66402 6.73732 6.76699 7.05545 7.07428 7.15910 7.47459 7.55449 7.63132 7.93893 8.15290 8.34137 8.38559 8.82212 9.58528 10.98723 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002785 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.010548 B =10051.611417 C =10528.317326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.244 6.244 3 C -0.104 4.104 4 C 0.153 3.847 5 H 0.092 0.908 6 C -0.135 4.135 7 C -0.134 4.134 8 C 0.095 3.905 9 N -0.584 5.584 10 C 0.527 3.473 11 O -0.525 6.525 12 C 0.501 3.499 13 O -0.527 6.527 14 N -0.684 5.684 15 C 0.137 3.863 16 C 0.041 3.959 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.588 4.588 20 H 0.053 0.947 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 1.068 2.932 24 H -0.288 1.288 25 H -0.288 1.288 26 H -0.285 1.285 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.409 0.591 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.017 0.983 46 H 0.072 0.928 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -1.034 -23.928 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.020 6.020 3 C -0.253 4.253 4 C 0.048 3.952 5 H 0.110 0.890 6 C -0.173 4.173 7 C -0.172 4.172 8 C -0.027 4.027 9 N -0.319 5.319 10 C 0.310 3.690 11 O -0.402 6.402 12 C 0.281 3.719 13 O -0.405 6.405 14 N -0.335 5.335 15 C 0.016 3.984 16 C 0.041 3.959 17 C -0.206 4.206 18 C -0.205 4.205 19 C -0.626 4.626 20 H 0.072 0.928 21 C -0.178 4.178 22 N -0.557 5.557 23 Si 0.896 3.104 24 H -0.215 1.215 25 H -0.214 1.214 26 H -0.210 1.210 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.571 -2.092 -22.180 22.427 hybrid contribution -1.372 1.457 -1.619 2.574 sum -3.943 -0.636 -23.799 24.132 Atomic orbital electron populations 1.23405 0.94916 1.06427 1.04814 1.86854 1.06600 1.10684 1.97831 1.23948 0.99685 0.95484 1.06219 1.21413 0.90158 0.98549 0.85036 0.89001 1.22874 0.97605 1.00933 0.95906 1.22823 0.97079 1.01713 0.95548 1.22745 0.94647 0.89650 0.95697 1.48236 1.44735 1.35002 1.03929 1.20100 0.82891 0.83027 0.82955 1.90710 1.33401 1.32027 1.84012 1.19855 0.83799 0.83876 0.84406 1.90661 1.34167 1.31570 1.84135 1.46186 1.42004 1.40360 1.04995 1.21798 0.95562 0.96697 0.84386 1.18544 0.93245 0.92771 0.91373 1.22063 0.97561 0.99523 1.01425 1.22101 0.99136 0.98123 1.01129 1.21743 1.22146 1.27134 0.91590 0.92845 1.25679 0.96496 0.95948 0.99634 1.70842 1.27218 1.20417 1.37195 0.83563 0.75893 0.75444 0.75451 1.21524 1.21419 1.21048 0.90506 0.90684 0.88145 0.88330 0.89211 0.89805 0.88748 0.90596 0.89508 0.87453 0.90643 0.75436 0.91908 0.91783 0.90815 0.96301 0.94288 0.94375 0.96408 0.90922 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 10.76 101.05 1.09 0.05 16 2 S -0.24 -2.59 20.25 -107.50 -2.18 -4.77 16 3 C -0.10 -1.04 5.63 37.16 0.21 -0.83 16 4 C 0.15 1.52 3.18 -66.95 -0.21 1.31 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.13 -0.99 6.25 -24.89 -0.16 -1.15 16 7 C -0.13 -1.05 7.09 -24.58 -0.17 -1.22 16 8 C 0.09 1.08 6.21 -2.53 -0.02 1.07 16 9 N -0.58 -7.53 2.65 -163.52 -0.43 -7.96 16 10 C 0.53 8.44 7.73 -11.59 -0.09 8.36 16 11 O -0.53 -9.15 15.35 5.50 0.08 -9.06 16 12 C 0.50 8.98 7.86 -11.59 -0.09 8.89 16 13 O -0.53 -10.03 13.72 5.49 0.08 -9.95 16 14 N -0.68 -12.82 5.02 -60.73 -0.30 -13.12 16 15 C 0.14 2.90 4.50 -4.04 -0.02 2.88 16 16 C 0.04 0.97 0.50 -155.66 -0.08 0.89 16 17 C -0.15 -3.35 7.87 37.16 0.29 -3.06 16 18 C -0.15 -3.33 7.93 37.16 0.29 -3.03 16 19 C -0.59 -15.60 8.01 -34.44 -0.28 -15.87 16 20 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 21 C 0.03 0.72 5.09 -17.82 -0.09 0.63 16 22 N -0.92 -25.94 12.19 55.43 0.68 -25.27 16 23 Si 1.07 24.44 29.91 -169.99 -5.08 19.36 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.21 6.69 -51.92 -0.35 0.87 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.73 6.37 -51.93 -0.33 0.39 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 1.42 5.92 -51.93 -0.31 1.11 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.41 7.52 5.73 -40.82 -0.23 7.29 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.83 5.18 -51.93 -0.27 1.56 16 42 H 0.02 0.37 7.04 -51.93 -0.37 0.01 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.35 7.03 -51.93 -0.37 -0.02 16 46 H 0.07 1.81 5.27 -51.93 -0.27 1.53 16 47 H 0.28 7.74 3.52 -40.82 -0.14 7.60 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -29.90 375.36 -8.16 -38.06 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.33 Total: 8.15 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.68 Total: -1.09 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.06 Total: -46.35 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.16 Total: -19.02 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.18 Total: -4.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.90 -8.16 -38.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422480556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.834 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds