Wall clock time and date at job start Tue Mar 31 2020 16:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81394 * 103.00187 * 2 1 4 4 C 1.52997 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.99964 * 177.99966 * 4 3 2 6 6 C 1.54333 * 109.98907 * 56.96381 * 4 3 2 7 7 C 1.55159 * 103.02009 * 218.66645 * 6 4 3 8 8 C 1.54907 * 101.58230 * 35.30719 * 7 6 4 9 9 N 1.47020 * 109.88265 * 299.09739 * 4 3 2 10 10 C 1.34777 * 125.64697 * 298.39314 * 9 4 3 11 11 O 1.21343 * 120.00010 * 3.81623 * 10 9 4 12 12 C 1.49448 * 119.99873 * 183.81982 * 10 9 4 13 13 O 1.21354 * 120.00171 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00233 * 180.02562 * 12 10 9 15 15 C 1.46499 * 120.00432 * 180.02562 * 14 12 10 16 16 C 1.53005 * 109.47420 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47090 * 59.99888 * 16 15 14 18 18 C 1.52998 * 109.47097 * 300.00010 * 16 15 14 19 19 C 1.50696 * 109.47098 * 179.97438 * 16 15 14 20 20 H 1.07995 * 120.00375 * 3.81857 * 19 16 15 21 21 C 1.37882 * 119.99839 * 183.81504 * 19 16 15 22 22 N 1.31513 * 119.99863 * 353.34616 * 21 19 16 23 23 Si 1.86793 * 119.99947 * 173.34815 * 21 19 16 24 24 H 1.48509 * 109.47386 * 89.99911 * 23 21 19 25 25 H 1.48504 * 109.47365 * 330.00299 * 23 21 19 26 26 H 1.48500 * 109.47256 * 209.99947 * 23 21 19 27 27 H 1.08998 * 109.46797 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.46939 * 59.99920 * 1 2 3 29 29 H 1.08994 * 109.46923 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46979 * 59.99603 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00479 * 3 2 1 32 32 H 1.08998 * 110.84919 * 100.19952 * 6 4 3 33 33 H 1.09002 * 110.67147 * 337.04531 * 6 4 3 34 34 H 1.09006 * 111.00088 * 277.23159 * 7 6 4 35 35 H 1.08997 * 111.03891 * 153.39702 * 7 6 4 36 36 H 1.09004 * 110.36768 * 204.15316 * 8 7 6 37 37 H 1.08990 * 110.45918 * 81.87526 * 8 7 6 38 38 H 0.97006 * 120.00256 * 359.97438 * 14 12 10 39 39 H 1.09000 * 109.47489 * 59.99773 * 15 14 12 40 40 H 1.08998 * 109.47219 * 299.99857 * 15 14 12 41 41 H 1.08994 * 109.47472 * 174.16632 * 17 16 15 42 42 H 1.09005 * 109.47052 * 294.16777 * 17 16 15 43 43 H 1.09006 * 109.46945 * 54.16271 * 17 16 15 44 44 H 1.09000 * 109.47227 * 305.81318 * 18 16 15 45 45 H 1.08997 * 109.47049 * 65.81261 * 18 16 15 46 46 H 1.08995 * 109.47122 * 185.81090 * 18 16 15 47 47 H 0.96996 * 120.00414 * 4.75921 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 1 3.9975 2.9991 -0.0351 6 6 4.3562 1.2136 -1.2149 7 6 5.6615 0.6060 -0.6365 8 6 5.2229 0.2403 0.8035 9 7 4.3145 1.3283 1.2090 10 6 4.0480 1.6974 2.4776 11 8 3.2243 2.5606 2.6980 12 6 4.7672 1.0434 3.6128 13 8 5.5914 0.1804 3.3923 14 7 4.5004 1.4120 4.8814 15 6 5.2058 0.7714 5.9941 16 6 4.7211 1.3687 7.3168 17 6 3.2165 1.1315 7.4625 18 6 5.0041 2.8722 7.3315 19 6 5.4462 0.7092 8.4614 20 1 6.2230 -0.0145 8.2633 21 6 5.1180 1.0298 9.7617 22 7 4.2673 2.0029 10.0042 23 14 5.8818 0.0820 11.1785 24 1 7.1430 0.7461 11.5956 25 1 6.1744 -1.3075 10.7440 26 1 4.9354 0.0540 12.3226 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2372 -0.8899 32 1 4.5807 1.9185 -2.0153 33 1 3.6897 0.4278 -1.5705 34 1 6.4641 1.3435 -0.6251 35 1 5.9589 -0.2834 -1.1921 36 1 6.0881 0.2020 1.4654 37 1 4.6979 -0.7148 0.8109 38 1 3.8419 2.1021 5.0577 39 1 6.2776 0.9407 5.8906 40 1 5.0045 -0.2998 5.9834 41 1 2.8901 1.4636 8.4479 42 1 2.6842 1.6933 6.6949 43 1 3.0035 0.0686 7.3482 44 1 6.0603 3.0451 7.1248 45 1 4.3995 3.3632 6.5691 46 1 4.7543 3.2793 8.3112 47 1 3.8183 2.4491 9.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422480556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:17 Heat of formation + Delta-G solvation = -80.106577 kcal Electronic energy + Delta-G solvation = -26865.853646 eV Core-core repulsion = 23174.563623 eV Total energy + Delta-G solvation = -3691.290024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98182 -40.26575 -38.68831 -38.60791 -35.40560 -32.98833 -32.51835 -32.38994 -29.83833 -28.25911 -27.91967 -27.15735 -26.86218 -25.31426 -23.07788 -22.09172 -20.95301 -20.74131 -19.25869 -18.41580 -18.27400 -17.55111 -17.04732 -16.67178 -16.50052 -15.87660 -15.61425 -15.58105 -15.37089 -14.92980 -14.63807 -14.59989 -14.46939 -14.41427 -14.35977 -14.10532 -13.70920 -13.39047 -13.33206 -13.26846 -12.83596 -12.80320 -12.67469 -12.55112 -12.43370 -12.16849 -11.96620 -11.90982 -11.76528 -11.73592 -11.45695 -10.88286 -10.67689 -10.48661 -10.30484 -10.23036 -9.89106 -8.64307 -8.39226 -6.25712 0.29915 0.66913 1.22158 1.57472 1.61357 1.64380 1.81986 2.08468 2.44284 2.62147 3.24663 3.25335 3.52380 3.59564 3.81231 4.09519 4.13217 4.16942 4.26102 4.27782 4.29085 4.31512 4.42142 4.43410 4.66315 4.73237 4.77495 4.82280 4.82949 4.86868 4.92080 4.92613 4.94657 5.05897 5.09499 5.16476 5.16879 5.28856 5.35401 5.57953 5.75665 5.98633 6.13636 6.18847 6.30713 6.60672 6.73852 6.89750 7.51523 8.88254 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002785 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.010548 B =10051.611417 C =10528.317326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.285 6.285 3 C -0.094 4.094 4 C 0.143 3.857 5 H 0.101 0.899 6 C -0.122 4.122 7 C -0.123 4.123 8 C 0.089 3.911 9 N -0.576 5.576 10 C 0.526 3.474 11 O -0.544 6.544 12 C 0.499 3.501 13 O -0.540 6.540 14 N -0.684 5.684 15 C 0.154 3.846 16 C 0.035 3.965 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.602 4.602 20 H 0.044 0.956 21 C -0.016 4.016 22 N -0.940 5.940 23 Si 1.108 2.892 24 H -0.278 1.278 25 H -0.276 1.276 26 H -0.286 1.286 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.411 0.589 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -1.014 -26.446 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.061 6.061 3 C -0.243 4.243 4 C 0.040 3.960 5 H 0.118 0.882 6 C -0.160 4.160 7 C -0.161 4.161 8 C -0.033 4.033 9 N -0.309 5.309 10 C 0.309 3.691 11 O -0.423 6.423 12 C 0.280 3.720 13 O -0.419 6.419 14 N -0.336 5.336 15 C 0.031 3.969 16 C 0.034 3.966 17 C -0.196 4.196 18 C -0.195 4.195 19 C -0.641 4.641 20 H 0.063 0.937 21 C -0.216 4.216 22 N -0.581 5.581 23 Si 0.932 3.068 24 H -0.204 1.204 25 H -0.201 1.201 26 H -0.212 1.212 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.605 -2.079 -24.757 24.980 hybrid contribution -1.374 1.419 -0.931 2.183 sum -3.979 -0.661 -25.688 26.003 Atomic orbital electron populations 1.23437 0.92558 1.07208 1.05429 1.86966 1.09371 1.11836 1.97917 1.23886 0.99549 0.94605 1.06269 1.21782 0.90395 0.99237 0.84600 0.88152 1.22874 0.96752 1.01227 0.95186 1.22815 0.97543 1.02858 0.92847 1.22817 0.93524 0.89092 0.97847 1.48348 1.44139 1.34702 1.03718 1.19633 0.82902 0.83087 0.83519 1.90702 1.34238 1.32955 1.84364 1.20299 0.83532 0.83549 0.84650 1.90660 1.34685 1.32072 1.84440 1.46018 1.42116 1.40541 1.04939 1.21377 0.95146 0.96012 0.84332 1.18547 0.93357 0.93083 0.91581 1.21920 0.97313 0.99507 1.00836 1.21950 0.99340 0.97660 1.00531 1.22064 1.22114 1.27008 0.92894 0.93717 1.26818 0.96516 0.96112 1.02124 1.70905 1.28312 1.21483 1.37368 0.83031 0.75553 0.75113 0.73132 1.20448 1.20112 1.21167 0.91214 0.88711 0.87315 0.90924 0.86388 0.86819 0.88759 0.89752 0.87524 0.89488 0.91393 0.75130 0.92749 0.92828 0.93023 0.94011 0.94662 0.94654 0.94051 0.93172 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 10.76 113.37 1.22 -0.50 16 2 S -0.29 -5.65 20.25 -56.49 -1.14 -6.79 16 3 C -0.09 -1.70 5.63 71.98 0.41 -1.29 16 4 C 0.14 2.53 3.18 45.34 0.14 2.67 16 5 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 6 C -0.12 -1.38 6.25 31.79 0.20 -1.19 16 7 C -0.12 -1.58 7.09 31.99 0.23 -1.35 16 8 C 0.09 1.95 6.21 86.85 0.54 2.49 16 9 N -0.58 -14.24 2.65 -789.61 -2.09 -16.33 16 10 C 0.53 16.68 7.73 87.27 0.67 17.36 16 11 O -0.54 -18.76 15.35 -3.23 -0.05 -18.80 16 12 C 0.50 17.93 7.86 87.27 0.69 18.61 16 13 O -0.54 -20.71 13.72 -3.26 -0.04 -20.76 16 14 N -0.68 -25.63 5.02 -464.41 -2.33 -27.96 16 15 C 0.15 6.56 4.50 86.38 0.39 6.95 16 16 C 0.04 1.65 0.50 -52.93 -0.03 1.62 16 17 C -0.14 -6.28 7.87 71.98 0.57 -5.72 16 18 C -0.14 -6.21 7.93 71.98 0.57 -5.64 16 19 C -0.60 -32.34 8.01 25.60 0.20 -32.14 16 20 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 21 C -0.02 -0.87 5.09 84.66 0.43 -0.44 16 22 N -0.94 -53.86 12.19 21.45 0.26 -53.59 16 23 Si 1.11 49.33 29.91 68.60 2.05 51.38 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.72 6.69 -2.39 -0.02 1.71 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.14 6.37 -2.39 -0.02 1.13 16 34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 2.28 5.92 -2.38 -0.01 2.27 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 14.96 5.73 -92.70 -0.53 14.43 16 39 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.37 8.14 -2.39 -0.02 2.36 16 41 H 0.05 2.60 5.18 -2.39 -0.01 2.58 16 42 H 0.04 1.66 7.04 -2.38 -0.02 1.65 16 43 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.64 7.03 -2.39 -0.02 1.62 16 46 H 0.05 2.51 5.27 -2.39 -0.01 2.50 16 47 H 0.28 15.60 3.52 -92.71 -0.33 15.28 16 Total: -1.00 -65.13 375.36 3.76 -61.36 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.88 Total: 30.07 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.23 Total: 1.43 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.17 Total: -97.89 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.09 Total: -39.56 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.14 Total: -6.79 kcal Total: -65.13 3.76 -61.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422480556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.743 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds