Wall clock time and date at job start Tue Mar 31 2020 14:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46805 * 2 1 4 4 N 1.30014 * 127.33909 * 269.99967 * 3 2 1 5 5 O 1.20653 * 112.30485 * 179.97438 * 4 3 2 6 6 C 1.33490 * 113.15694 * 359.75606 * 5 4 3 7 7 C 1.50703 * 126.83029 * 180.30363 * 6 5 4 8 8 C 1.37358 * 106.34272 * 0.39014 * 6 5 4 9 9 C 1.47396 * 128.56810 * 179.91480 * 8 6 5 10 10 O 1.21606 * 120.00041 * 269.67524 * 9 8 6 11 11 N 1.34777 * 119.99955 * 89.66975 * 9 8 6 12 12 C 1.46499 * 119.99802 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47157 * 35.00051 * 12 11 9 14 14 C 1.53005 * 109.47037 * 155.00168 * 12 11 9 15 15 C 1.50695 * 109.46948 * 295.00272 * 14 12 11 16 16 H 1.07996 * 120.00568 * 359.97438 * 15 14 12 17 17 C 1.37883 * 119.99585 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99617 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47260 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46795 * 120.00235 * 19 17 15 22 22 H 1.48498 * 109.47234 * 239.99754 * 19 17 15 23 23 C 1.50702 * 109.47629 * 275.00358 * 12 11 9 24 24 C 1.38234 * 120.00271 * 139.99738 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99485 * 319.97866 * 23 12 11 29 29 H 1.08993 * 109.47549 * 299.99920 * 1 2 3 30 30 H 1.09003 * 109.47083 * 60.00425 * 1 2 3 31 31 H 1.08996 * 109.46478 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47800 * 240.00135 * 2 1 3 33 33 H 1.09003 * 109.47083 * 119.99575 * 2 1 3 34 34 H 1.09002 * 109.46708 * 270.10559 * 7 6 5 35 35 H 1.08996 * 109.47293 * 30.09890 * 7 6 5 36 36 H 1.08996 * 109.47148 * 150.10336 * 7 6 5 37 37 H 0.96998 * 120.00356 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47096 * 55.00279 * 14 12 11 39 39 H 1.09000 * 109.46911 * 174.99918 * 14 12 11 40 40 H 0.97006 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99769 * 359.97438 * 24 23 12 42 42 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00489 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2951 2.1644 -1.0337 5 8 2.6830 3.2631 -0.7207 6 6 2.7405 3.4429 0.6008 7 6 3.1729 4.6919 1.3246 8 6 2.3290 2.2623 1.1697 9 6 2.2084 1.9240 2.5992 10 8 3.1515 1.4334 3.1896 11 7 1.0528 2.1586 3.2520 12 6 0.9327 1.8219 4.6727 13 1 1.8872 1.9964 5.1694 14 6 -0.1444 2.6983 5.3153 15 6 0.2952 4.1393 5.2828 16 1 1.2477 4.4037 4.8478 17 6 -0.5187 5.1203 5.8085 18 7 -1.6788 4.7985 6.3377 19 14 0.0266 6.9065 5.7688 20 1 1.3610 7.0026 5.1243 21 1 -0.9557 7.7068 4.9941 22 1 0.1074 7.4303 7.1560 23 6 0.5506 0.3711 4.8147 24 6 1.1222 -0.4002 5.8093 25 6 0.7711 -1.7308 5.9398 26 6 -0.1518 -2.2901 5.0760 27 6 -0.7242 -1.5186 4.0820 28 6 -0.3719 -0.1883 3.9504 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2479 4.6557 1.5012 35 1 2.9337 5.5650 0.7175 36 1 2.6500 4.7584 2.2786 37 1 0.3004 2.5497 2.7810 38 1 -1.0777 2.5906 4.7627 39 1 -0.2963 2.3879 6.3490 40 1 -2.2512 5.4886 6.7079 41 1 1.8430 0.0369 6.4844 42 1 1.2174 -2.3333 6.7171 43 1 -0.4228 -3.3309 5.1751 44 1 -1.4451 -1.9556 3.4068 45 1 -0.8184 0.4141 3.1732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440039367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:34 Heat of formation + Delta-G solvation = 27.844931 kcal Electronic energy + Delta-G solvation = -28456.159452 eV Core-core repulsion = 24634.106605 eV Total energy + Delta-G solvation = -3822.052846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.78447 -39.66869 -38.40899 -35.38971 -35.17114 -33.55509 -32.77383 -31.42516 -31.03034 -30.47727 -28.91165 -27.88192 -25.47872 -24.56336 -23.62384 -22.34145 -22.00157 -20.68887 -19.87725 -19.66068 -17.75323 -17.63886 -16.88250 -16.23683 -16.16995 -15.60983 -14.95300 -14.72412 -14.60500 -14.48190 -14.08506 -13.97804 -13.36773 -13.34296 -13.21874 -13.02307 -12.78648 -12.71537 -12.55161 -12.47542 -12.16627 -11.67014 -11.66631 -11.51777 -11.19353 -11.01882 -10.89019 -10.77096 -10.64196 -10.54288 -9.96252 -9.85272 -9.72842 -9.35738 -9.24945 -8.61865 -8.53159 -8.51627 -8.23852 -6.15156 -4.19096 1.39993 1.73035 1.76246 1.98506 2.75560 2.95160 3.21286 3.30465 3.32094 3.66101 4.10221 4.22256 4.31440 4.33905 4.96165 5.04439 5.09220 5.16914 5.21010 5.21975 5.23209 5.26551 5.34040 5.40904 5.45390 5.49660 5.61273 5.75363 5.84323 5.85112 5.89118 5.96445 5.98406 6.11944 6.12567 6.30345 6.38441 6.50518 6.77139 6.80377 6.81704 7.04865 7.35833 7.42595 7.54100 7.80728 7.97807 8.18582 8.27421 8.58144 8.86424 9.46163 10.95358 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.006074 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.240200 B = 4608.869396 C = 7353.717277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.360 5.360 5 O 0.091 5.909 6 C 0.019 3.981 7 C -0.081 4.081 8 C -0.244 4.244 9 C 0.596 3.404 10 O -0.535 6.535 11 N -0.686 5.686 12 C 0.184 3.816 13 H 0.089 0.911 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.073 4.073 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -8.186 -9.301 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.066 5.066 5 O 0.030 5.970 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.251 4.251 9 C 0.379 3.621 10 O -0.412 6.412 11 N -0.335 5.335 12 C 0.080 3.920 13 H 0.107 0.893 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.074 4.074 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.238 0.762 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.352 -8.604 -10.085 13.953 hybrid contribution -0.237 1.129 0.622 1.311 sum 4.114 -7.475 -9.463 12.742 Atomic orbital electron populations 1.21734 0.93462 1.02555 1.02617 1.19977 0.96756 0.87622 1.04058 1.24713 1.00482 0.98640 0.86669 1.73558 1.16935 0.92665 1.23486 1.84497 1.63051 1.26642 1.22811 1.24646 0.98809 0.97553 0.83458 1.20519 1.03120 0.90373 0.99857 1.22064 1.12390 0.94912 0.95729 1.16850 0.83340 0.78322 0.83570 1.90786 1.38583 1.44099 1.67754 1.45973 1.14022 1.61873 1.11600 1.20326 1.02436 0.89121 0.80082 0.89298 1.19405 0.92113 0.93369 0.96495 1.21136 1.04184 0.91223 1.39398 0.92346 1.24988 0.94883 0.99088 0.95125 1.69961 1.10279 1.33381 1.39255 0.86566 0.78709 0.85031 0.77897 1.19644 1.21007 1.20958 1.20514 0.95451 0.96544 0.94932 1.21014 0.99653 0.93701 0.98200 1.21042 0.98350 0.95267 0.99370 1.21002 0.98286 0.99395 0.96492 1.21031 1.00180 0.94341 0.98641 1.20900 0.97450 0.94860 0.99305 0.91933 0.92378 0.91428 0.89830 0.89310 0.88858 0.89248 0.87973 0.76243 0.95669 0.94579 0.92858 0.86152 0.86593 0.86834 0.86720 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.18 16 2 C -0.05 -0.55 6.55 -27.88 -0.18 -0.74 16 3 C 0.06 0.84 6.84 -79.76 -0.55 0.29 16 4 N -0.36 -5.40 12.01 34.78 0.42 -4.98 16 5 O 0.09 1.30 11.06 18.66 0.21 1.51 16 6 C 0.02 0.26 7.55 -34.63 -0.26 0.00 16 7 C -0.08 -0.92 10.33 36.01 0.37 -0.55 16 8 C -0.24 -3.83 6.24 -102.89 -0.64 -4.47 16 9 C 0.60 10.59 7.56 -12.53 -0.09 10.49 16 10 O -0.53 -11.22 16.77 5.27 0.09 -11.13 16 11 N -0.69 -11.97 4.03 -56.02 -0.23 -12.20 16 12 C 0.18 3.56 2.12 -69.08 -0.15 3.42 16 13 H 0.09 1.87 7.44 -51.93 -0.39 1.49 16 14 C 0.02 0.54 4.49 -27.88 -0.13 0.41 16 15 C -0.52 -13.09 8.84 -34.44 -0.30 -13.39 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 19 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 24 C -0.11 -1.78 9.67 -39.59 -0.38 -2.17 16 25 C -0.12 -1.76 10.05 -39.59 -0.40 -2.15 16 26 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 28 C -0.11 -1.70 9.32 -39.58 -0.37 -2.07 16 29 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 37 H 0.40 6.65 8.59 -40.82 -0.35 6.30 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.72 7.45 -52.49 -0.39 1.33 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -30.44 390.79 -8.60 -39.04 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.57 Total: 7.54 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -4.12 Total: -16.73 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.93 Total: -41.22 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.29 Total: -9.62 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.44 -8.60 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440039367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.884 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds