Wall clock time and date at job start Tue Mar 31 2020 14:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46805 * 2 1 4 4 N 1.30014 * 127.33909 * 269.99967 * 3 2 1 5 5 O 1.20653 * 112.30485 * 179.97438 * 4 3 2 6 6 C 1.33490 * 113.15694 * 359.75606 * 5 4 3 7 7 C 1.50703 * 126.83029 * 180.30363 * 6 5 4 8 8 C 1.37358 * 106.34272 * 0.39014 * 6 5 4 9 9 C 1.47396 * 128.56810 * 179.91480 * 8 6 5 10 10 O 1.21606 * 120.00041 * 269.67524 * 9 8 6 11 11 N 1.34777 * 119.99955 * 89.66975 * 9 8 6 12 12 C 1.46499 * 119.99802 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47157 * 35.00051 * 12 11 9 14 14 C 1.53005 * 109.47037 * 155.00168 * 12 11 9 15 15 C 1.50695 * 109.46948 * 295.00272 * 14 12 11 16 16 H 1.07996 * 120.00568 * 359.97438 * 15 14 12 17 17 C 1.37883 * 119.99585 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99617 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47260 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46795 * 120.00235 * 19 17 15 22 22 H 1.48498 * 109.47234 * 239.99754 * 19 17 15 23 23 C 1.50702 * 109.47629 * 275.00358 * 12 11 9 24 24 C 1.38234 * 120.00271 * 139.99738 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99485 * 319.97866 * 23 12 11 29 29 H 1.08993 * 109.47549 * 299.99920 * 1 2 3 30 30 H 1.09003 * 109.47083 * 60.00425 * 1 2 3 31 31 H 1.08996 * 109.46478 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47800 * 240.00135 * 2 1 3 33 33 H 1.09003 * 109.47083 * 119.99575 * 2 1 3 34 34 H 1.09002 * 109.46708 * 270.10559 * 7 6 5 35 35 H 1.08996 * 109.47293 * 30.09890 * 7 6 5 36 36 H 1.08996 * 109.47148 * 150.10336 * 7 6 5 37 37 H 0.96998 * 120.00356 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47096 * 55.00279 * 14 12 11 39 39 H 1.09000 * 109.46911 * 174.99918 * 14 12 11 40 40 H 0.97006 * 119.99881 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99769 * 359.97438 * 24 23 12 42 42 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00489 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2951 2.1644 -1.0337 5 8 2.6830 3.2631 -0.7207 6 6 2.7405 3.4429 0.6008 7 6 3.1729 4.6919 1.3246 8 6 2.3290 2.2623 1.1697 9 6 2.2084 1.9240 2.5992 10 8 3.1515 1.4334 3.1896 11 7 1.0528 2.1586 3.2520 12 6 0.9327 1.8219 4.6727 13 1 1.8872 1.9964 5.1694 14 6 -0.1444 2.6983 5.3153 15 6 0.2952 4.1393 5.2828 16 1 1.2477 4.4037 4.8478 17 6 -0.5187 5.1203 5.8085 18 7 -1.6788 4.7985 6.3377 19 14 0.0266 6.9065 5.7688 20 1 1.3610 7.0026 5.1243 21 1 -0.9557 7.7068 4.9941 22 1 0.1074 7.4303 7.1560 23 6 0.5506 0.3711 4.8147 24 6 1.1222 -0.4002 5.8093 25 6 0.7711 -1.7308 5.9398 26 6 -0.1518 -2.2901 5.0760 27 6 -0.7242 -1.5186 4.0820 28 6 -0.3719 -0.1883 3.9504 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2479 4.6557 1.5012 35 1 2.9337 5.5650 0.7175 36 1 2.6500 4.7584 2.2786 37 1 0.3004 2.5497 2.7810 38 1 -1.0777 2.5906 4.7627 39 1 -0.2963 2.3879 6.3490 40 1 -2.2512 5.4886 6.7079 41 1 1.8430 0.0369 6.4844 42 1 1.2174 -2.3333 6.7171 43 1 -0.4228 -3.3309 5.1751 44 1 -1.4451 -1.9556 3.4068 45 1 -0.8184 0.4141 3.1732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440039367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:33 Heat of formation + Delta-G solvation = 12.209650 kcal Electronic energy + Delta-G solvation = -28456.837448 eV Core-core repulsion = 24634.106605 eV Total energy + Delta-G solvation = -3822.730843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.93233 -41.08201 -39.69754 -36.84858 -36.34063 -34.79165 -34.58790 -32.60832 -32.24105 -31.65348 -30.54983 -28.98108 -27.02610 -25.81165 -24.79332 -23.78882 -23.33389 -22.00131 -21.25721 -20.82533 -19.06987 -18.81779 -18.56463 -17.69298 -17.46306 -17.02106 -16.44902 -16.24212 -15.81129 -15.67767 -15.29121 -15.10172 -14.75675 -14.50474 -14.29022 -14.19615 -14.14150 -13.98565 -13.72571 -13.67903 -13.51440 -13.44673 -12.92125 -12.63748 -12.58535 -12.49073 -12.46434 -12.13525 -11.88849 -11.85621 -11.59622 -11.35313 -11.24563 -10.99590 -10.57524 -10.42609 -10.09511 -9.73297 -9.51297 -8.18251 -6.28418 0.25408 0.52369 0.58371 0.82871 1.36319 1.41159 1.44251 1.54628 1.77627 2.33054 2.41984 2.96663 3.05185 3.17145 3.21968 3.75422 3.90756 4.00728 4.04426 4.10659 4.21884 4.25915 4.30396 4.35220 4.35897 4.47315 4.54393 4.65405 4.66819 4.76708 4.79304 4.84407 4.93416 5.02940 5.05449 5.13060 5.19223 5.22924 5.27329 5.44078 5.58159 5.63312 5.66813 5.79272 5.88434 6.17260 6.21829 6.53001 6.84466 7.13818 7.14228 7.40718 8.92648 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.006074 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.240200 B = 4608.869396 C = 7353.717277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.060 3.940 4 N -0.371 5.371 5 O 0.093 5.907 6 C 0.034 3.966 7 C -0.083 4.083 8 C -0.274 4.274 9 C 0.606 3.394 10 O -0.571 6.571 11 N -0.679 5.679 12 C 0.201 3.799 13 H 0.064 0.936 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.953 3.047 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.286 1.286 23 C -0.101 4.101 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.407 0.593 38 H 0.011 0.989 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -8.950 -10.687 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.102 4.102 4 N -0.079 5.079 5 O 0.034 5.966 6 C -0.030 4.030 7 C -0.140 4.140 8 C -0.282 4.282 9 C 0.391 3.609 10 O -0.451 6.451 11 N -0.326 5.326 12 C 0.097 3.903 13 H 0.083 0.917 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.212 1.212 23 C -0.102 4.102 24 C -0.150 4.150 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.029 0.971 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.164 0.836 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.339 -9.357 -11.493 15.442 hybrid contribution -0.238 1.301 1.068 1.700 sum 4.101 -8.056 -10.424 13.798 Atomic orbital electron populations 1.21713 0.92216 1.03852 1.02080 1.20100 0.97758 0.86209 1.04399 1.25081 0.99701 0.99493 0.85963 1.73544 1.17728 0.92978 1.23615 1.84491 1.62948 1.26504 1.22677 1.25068 0.96861 0.97716 0.83348 1.20676 1.03824 0.90292 0.99188 1.21919 1.15048 0.96450 0.94746 1.16971 0.82450 0.77259 0.84241 1.90758 1.39663 1.45811 1.68863 1.45833 1.14318 1.61684 1.10813 1.19832 0.99683 0.90219 0.80606 0.91749 1.19147 0.92662 0.93346 0.94872 1.21434 1.03993 0.92327 1.38699 0.92259 1.25786 0.94886 1.03311 0.94837 1.70081 1.11503 1.34696 1.40455 0.85566 0.78887 0.79940 0.77720 1.18267 1.20469 1.21188 1.20412 0.97486 0.95535 0.96770 1.21165 1.00324 0.95173 0.98322 1.21376 0.98343 0.94314 1.00134 1.21465 0.96855 1.01011 0.95222 1.21414 1.00173 0.93335 0.99044 1.21034 0.97264 0.96170 0.99149 0.93095 0.92225 0.89227 0.88169 0.90174 0.87210 0.86312 0.89627 0.75725 0.97078 0.97569 0.92844 0.86855 0.83980 0.83218 0.83556 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.89 71.98 0.71 -2.05 16 2 C -0.05 -1.07 6.55 29.85 0.20 -0.87 16 3 C 0.06 1.71 6.84 45.16 0.31 2.02 16 4 N -0.37 -10.71 12.01 -44.77 -0.54 -11.25 16 5 O 0.09 2.54 11.06 77.02 0.85 3.39 16 6 C 0.03 0.91 7.55 25.48 0.19 1.11 16 7 C -0.08 -1.76 10.33 71.24 0.74 -1.02 16 8 C -0.27 -8.60 6.24 -18.74 -0.12 -8.72 16 9 C 0.61 22.07 7.56 86.65 0.65 22.72 16 10 O -0.57 -24.75 16.77 -4.05 -0.07 -24.82 16 11 N -0.68 -24.54 4.03 -449.39 -1.81 -26.35 16 12 C 0.20 8.20 2.12 44.25 0.09 8.29 16 13 H 0.06 2.91 7.44 -2.39 -0.02 2.89 16 14 C 0.04 1.79 4.49 29.85 0.13 1.92 16 15 C -0.53 -27.20 8.84 25.60 0.23 -26.97 16 16 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.01 0.55 5.46 84.66 0.46 1.01 16 18 N -0.93 -52.83 13.29 21.45 0.28 -52.55 16 19 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 23 C -0.10 -3.69 4.91 -19.87 -0.10 -3.78 16 24 C -0.13 -4.48 9.67 22.27 0.22 -4.26 16 25 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 26 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 27 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 28 C -0.12 -3.72 9.32 22.27 0.21 -3.51 16 29 H 0.05 1.11 7.88 -2.39 -0.02 1.09 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.16 8.11 -2.39 -0.02 2.14 16 37 H 0.41 13.91 8.59 -92.71 -0.80 13.12 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 41 H 0.11 3.85 8.04 -2.91 -0.02 3.83 16 42 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.12 3.54 7.45 -2.91 -0.02 3.52 16 Total: -1.00 -67.20 390.79 5.55 -61.66 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.20 Total: 29.44 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 4.60 Total: -23.00 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.06 Total: -90.15 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.78 Total: -21.43 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -67.20 5.55 -61.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440039367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.866 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds