Wall clock time and date at job start Tue Mar 31 2020 15:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.53004 * 109.47187 * 119.99866 * 2 1 3 5 5 C 1.53004 * 109.47056 * 65.00231 * 4 2 1 6 6 N 1.46494 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00104 * 274.99651 * 6 5 4 8 8 C 1.53003 * 109.47159 * 275.00135 * 7 6 5 9 9 C 1.47194 * 109.46804 * 179.97438 * 8 7 6 10 10 N 7.47444 * 126.34612 * 162.10738 * 2 1 3 11 11 S 1.65602 * 120.00036 * 94.99622 * 6 5 4 12 12 O 1.42100 * 104.27917 * 333.93115 * 11 6 5 13 13 O 1.42092 * 104.27742 * 206.06950 * 11 6 5 14 14 C 1.81402 * 104.44803 * 89.99751 * 11 6 5 15 15 C 1.52999 * 109.47264 * 186.32857 * 14 11 6 16 16 C 1.50708 * 115.55027 * 294.98728 * 15 14 11 17 17 H 1.07999 * 119.99601 * 114.94454 * 16 15 14 18 18 C 1.37870 * 119.99791 * 294.66484 * 16 15 14 19 19 N 1.31518 * 119.99829 * 175.68103 * 18 16 15 20 20 Si 1.86801 * 120.00494 * 355.68668 * 18 16 15 21 21 H 1.48499 * 109.47243 * 92.05030 * 20 18 16 22 22 H 1.48500 * 109.47316 * 212.05337 * 20 18 16 23 23 H 1.48501 * 109.46626 * 332.05548 * 20 18 16 24 24 C 1.52995 * 117.49565 * 80.65476 * 15 14 11 25 25 C 1.52998 * 117.49920 * 149.31427 * 15 14 11 26 26 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46833 * 299.99539 * 1 2 3 28 28 H 1.08996 * 109.47264 * 60.00038 * 1 2 3 29 29 H 1.08997 * 109.46818 * 239.99960 * 2 1 3 30 30 H 1.09001 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46999 * 300.00124 * 3 2 1 32 32 H 1.08997 * 109.47287 * 60.00247 * 3 2 1 33 33 H 1.08995 * 109.46926 * 305.00135 * 4 2 1 34 34 H 1.09005 * 109.46723 * 184.99724 * 4 2 1 35 35 H 1.08999 * 109.47265 * 59.99218 * 5 4 2 36 36 H 1.09004 * 109.46656 * 299.99817 * 5 4 2 37 37 H 1.09003 * 109.46623 * 34.99876 * 7 6 5 38 38 H 1.09000 * 109.47071 * 154.99726 * 7 6 5 39 39 H 1.08998 * 109.46867 * 300.00092 * 8 7 6 40 40 H 1.09003 * 109.46563 * 59.99846 * 8 7 6 41 41 H 1.09004 * 109.46756 * 66.33262 * 14 11 6 42 42 H 1.08997 * 109.47271 * 306.33516 * 14 11 6 43 43 H 0.97004 * 119.99762 * 179.97438 * 19 18 16 44 44 H 1.09005 * 117.49743 * 214.99928 * 24 15 14 45 45 H 1.08999 * 117.50254 * 0.02905 * 24 15 14 46 46 H 1.09002 * 117.49945 * 359.97438 * 25 15 14 47 47 H 1.09006 * 117.49607 * 144.97797 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 7 2.1242 -2.8862 2.3838 7 6 3.4924 -3.4086 2.4201 8 6 3.5244 -4.7992 1.7828 9 6 4.8993 -5.3238 1.8188 10 7 5.9598 -5.7291 1.8496 11 16 1.1302 -3.0765 3.6946 12 8 0.2097 -1.9984 3.5959 13 8 2.0204 -3.1812 4.7972 14 6 0.2917 -4.6581 3.4010 15 6 -0.7783 -4.8748 4.4729 16 6 -0.2649 -5.0357 5.8807 17 1 -0.5050 -4.2967 6.6308 18 6 0.5064 -6.1293 6.2123 19 7 1.0251 -6.2272 7.4169 20 14 0.8151 -7.4719 4.9507 21 1 2.0693 -7.1780 4.2118 22 1 0.9423 -8.7803 5.6412 23 1 -0.3211 -7.5244 3.9959 24 6 -2.1189 -4.1613 4.2871 25 6 -2.0215 -5.6746 4.0786 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9564 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5490 -2.2724 1.1421 37 1 4.1514 -2.7399 1.8664 38 1 3.8285 -3.4753 3.4549 39 1 2.8654 -5.4679 2.3365 40 1 3.1883 -4.7324 0.7481 41 1 1.0192 -5.4686 3.4449 42 1 -0.1772 -4.6436 2.4172 43 1 1.5675 -6.9968 7.6503 44 1 -2.6297 -3.8084 5.1831 45 1 -2.2388 -3.5380 3.4010 46 1 -2.0773 -6.0461 3.0553 47 1 -2.4679 -6.3176 4.8372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451165439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:59 Heat of formation + Delta-G solvation = -34.734218 kcal Electronic energy + Delta-G solvation = -27644.942715 eV Core-core repulsion = 23955.620185 eV Total energy + Delta-G solvation = -3689.322530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.10146 -37.15144 -36.97647 -36.37206 -35.47755 -35.17090 -32.23869 -31.61643 -28.69463 -28.51899 -27.25110 -25.58321 -24.44840 -22.64559 -21.67528 -20.10314 -19.42570 -18.48488 -17.79607 -17.35203 -16.71428 -16.18333 -15.47249 -15.21776 -15.09984 -15.01155 -14.41468 -14.27152 -14.02654 -13.77411 -13.70515 -13.15060 -13.09557 -12.83204 -12.66002 -12.49645 -12.42052 -12.35370 -12.19091 -11.90236 -11.72518 -11.51329 -11.42328 -11.25091 -11.17724 -11.00879 -10.87736 -10.86450 -10.77326 -10.73173 -10.53767 -10.51446 -10.19582 -9.67371 -9.22300 -9.07722 -8.79125 -8.46644 -6.20975 -4.27523 0.78173 2.61019 2.70630 3.06711 3.09019 3.25859 3.29703 3.91315 4.28108 4.37096 4.56985 4.63468 4.70274 4.74889 4.80610 4.84639 4.88054 4.98839 5.06135 5.19390 5.27250 5.32466 5.40253 5.44575 5.52784 5.57544 5.61267 5.67850 5.76436 5.80597 5.85672 5.88876 5.95023 5.98667 6.09519 6.11270 6.19016 6.26015 6.36484 6.42679 6.55877 6.64762 6.82062 7.04129 7.46429 7.54637 8.34411 8.83928 9.39886 10.90652 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.005385 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.281107 B = 5198.024444 C = 6726.780560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.138 4.138 5 C 0.121 3.879 6 N -1.009 6.009 7 C 0.119 3.881 8 C -0.058 4.058 9 C 0.214 3.786 10 N -0.434 5.434 11 S 2.609 3.391 12 O -0.955 6.955 13 O -0.929 6.929 14 C -0.583 4.583 15 C 0.001 3.999 16 C -0.511 4.511 17 H 0.086 0.914 18 C 0.093 3.907 19 N -0.876 5.876 20 Si 0.853 3.147 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.244 1.244 24 C -0.178 4.178 25 C -0.178 4.178 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.268 0.732 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 8.245 -17.788 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.177 4.177 5 C -0.004 4.004 6 N -0.843 5.843 7 C -0.009 4.009 8 C -0.100 4.100 9 C -0.105 4.105 10 N -0.111 5.111 11 S 2.705 3.295 12 O -0.945 6.945 13 O -0.919 6.919 14 C -0.714 4.714 15 C -0.002 4.002 16 C -0.547 4.547 17 H 0.104 0.896 18 C -0.112 4.112 19 N -0.511 5.511 20 Si 0.679 3.321 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.168 1.168 24 C -0.216 4.216 25 C -0.217 4.217 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.830 8.150 -16.885 18.838 hybrid contribution -0.251 -1.450 -1.046 1.805 sum 1.580 6.700 -17.932 19.208 Atomic orbital electron populations 1.21928 0.95028 1.02147 1.01879 1.21057 0.96155 0.96151 0.97890 1.21838 1.00765 0.96115 1.01770 1.22118 1.01312 0.95318 0.98960 1.21368 0.99781 0.92062 0.87234 1.58109 1.23280 1.69815 1.33049 1.21205 0.83990 0.91674 1.03997 1.19925 0.85982 0.98681 1.05437 1.28852 0.94744 0.93644 0.93212 1.81211 1.12404 1.08766 1.08752 1.05301 0.74342 0.77036 0.72821 1.93516 1.64917 1.50457 1.85637 1.93596 1.62813 1.87116 1.48357 1.30404 1.12095 1.21910 1.07002 1.18824 0.84714 1.02916 0.93726 1.20348 1.33071 1.09944 0.91369 0.89620 1.24890 0.93982 0.97434 0.94936 1.69870 1.31875 1.29680 1.19634 0.87235 0.79485 0.82236 0.83102 1.20227 1.21199 1.16767 1.22972 1.01859 0.94507 1.02214 1.23074 1.04823 0.93629 1.00151 0.92341 0.92048 0.93069 0.91329 0.92861 0.92890 0.92497 0.90466 0.91602 0.90583 0.89737 0.89112 0.87459 0.87254 0.86601 0.86628 0.87097 0.92198 0.88885 0.90007 0.91024 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.95 37.16 0.33 -0.99 16 2 C -0.09 -0.77 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.14 -1.37 5.01 -26.73 -0.13 -1.50 16 5 C 0.12 1.17 5.01 -4.04 -0.02 1.15 16 6 N -1.01 -12.61 2.71 -114.38 -0.31 -12.92 16 7 C 0.12 1.31 5.61 -4.04 -0.02 1.29 16 8 C -0.06 -0.57 6.02 -29.52 -0.18 -0.75 16 9 C 0.21 2.68 15.43 -20.77 -0.32 2.36 16 10 N -0.43 -6.64 18.54 42.15 0.78 -5.86 16 11 S 2.61 47.57 5.10 -107.50 -0.55 47.03 16 12 O -0.95 -18.51 16.75 -57.54 -0.96 -19.47 16 13 O -0.93 -21.08 16.20 -57.54 -0.93 -22.01 16 14 C -0.58 -10.49 5.65 37.16 0.21 -10.28 16 15 C 0.00 0.02 0.79 -155.66 -0.12 -0.10 16 16 C -0.51 -13.70 8.75 -34.44 -0.30 -14.00 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.09 2.57 5.47 -17.82 -0.10 2.48 16 19 N -0.88 -26.07 13.96 55.43 0.77 -25.29 16 20 Si 0.85 19.72 24.92 -169.99 -4.24 15.48 16 21 H -0.28 -5.96 6.99 56.52 0.40 -5.56 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.24 -5.14 5.80 56.52 0.33 -4.81 16 24 C -0.18 -3.43 9.96 -26.70 -0.27 -3.69 16 25 C -0.18 -3.43 8.12 -26.69 -0.22 -3.65 16 26 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 36 H 0.08 0.82 6.03 -51.93 -0.31 0.51 16 37 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.11 1.42 6.82 -51.93 -0.35 1.07 16 39 H 0.11 1.16 7.21 -51.93 -0.37 0.79 16 40 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 2.08 3.99 -51.92 -0.21 1.87 16 42 H 0.11 1.50 8.09 -51.93 -0.42 1.08 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -34.05 391.87 -8.56 -42.62 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.97 Total: 4.07 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -1.06 Total: -29.54 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.24 Total: -44.07 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.90 Total: -41.49 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.24 Total: 15.48 kcal Atomic # 16 Polarization: 47.57 SS G_CDS: -0.55 Total: 47.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.05 -8.56 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451165439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.881 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds