Wall clock time and date at job start Tue Mar 31 2020 15:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.53004 * 109.47187 * 119.99866 * 2 1 3 5 5 C 1.53004 * 109.47056 * 65.00231 * 4 2 1 6 6 N 1.46494 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00104 * 274.99651 * 6 5 4 8 8 C 1.53003 * 109.47159 * 275.00135 * 7 6 5 9 9 C 1.47194 * 109.46804 * 179.97438 * 8 7 6 10 10 N 7.47444 * 126.34612 * 162.10738 * 2 1 3 11 11 S 1.65602 * 120.00036 * 94.99622 * 6 5 4 12 12 O 1.42100 * 104.27917 * 333.93115 * 11 6 5 13 13 O 1.42092 * 104.27742 * 206.06950 * 11 6 5 14 14 C 1.81402 * 104.44803 * 89.99751 * 11 6 5 15 15 C 1.52999 * 109.47264 * 186.32857 * 14 11 6 16 16 C 1.50708 * 115.55027 * 294.98728 * 15 14 11 17 17 H 1.07999 * 119.99601 * 114.94454 * 16 15 14 18 18 C 1.37870 * 119.99791 * 294.66484 * 16 15 14 19 19 N 1.31518 * 119.99829 * 175.68103 * 18 16 15 20 20 Si 1.86801 * 120.00494 * 355.68668 * 18 16 15 21 21 H 1.48499 * 109.47243 * 92.05030 * 20 18 16 22 22 H 1.48500 * 109.47316 * 212.05337 * 20 18 16 23 23 H 1.48501 * 109.46626 * 332.05548 * 20 18 16 24 24 C 1.52995 * 117.49565 * 80.65476 * 15 14 11 25 25 C 1.52998 * 117.49920 * 149.31427 * 15 14 11 26 26 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46833 * 299.99539 * 1 2 3 28 28 H 1.08996 * 109.47264 * 60.00038 * 1 2 3 29 29 H 1.08997 * 109.46818 * 239.99960 * 2 1 3 30 30 H 1.09001 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46999 * 300.00124 * 3 2 1 32 32 H 1.08997 * 109.47287 * 60.00247 * 3 2 1 33 33 H 1.08995 * 109.46926 * 305.00135 * 4 2 1 34 34 H 1.09005 * 109.46723 * 184.99724 * 4 2 1 35 35 H 1.08999 * 109.47265 * 59.99218 * 5 4 2 36 36 H 1.09004 * 109.46656 * 299.99817 * 5 4 2 37 37 H 1.09003 * 109.46623 * 34.99876 * 7 6 5 38 38 H 1.09000 * 109.47071 * 154.99726 * 7 6 5 39 39 H 1.08998 * 109.46867 * 300.00092 * 8 7 6 40 40 H 1.09003 * 109.46563 * 59.99846 * 8 7 6 41 41 H 1.09004 * 109.46756 * 66.33262 * 14 11 6 42 42 H 1.08997 * 109.47271 * 306.33516 * 14 11 6 43 43 H 0.97004 * 119.99762 * 179.97438 * 19 18 16 44 44 H 1.09005 * 117.49743 * 214.99928 * 24 15 14 45 45 H 1.08999 * 117.50254 * 0.02905 * 24 15 14 46 46 H 1.09002 * 117.49945 * 359.97438 * 25 15 14 47 47 H 1.09006 * 117.49607 * 144.97797 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 7 2.1242 -2.8862 2.3838 7 6 3.4924 -3.4086 2.4201 8 6 3.5244 -4.7992 1.7828 9 6 4.8993 -5.3238 1.8188 10 7 5.9598 -5.7291 1.8496 11 16 1.1302 -3.0765 3.6946 12 8 0.2097 -1.9984 3.5959 13 8 2.0204 -3.1812 4.7972 14 6 0.2917 -4.6581 3.4010 15 6 -0.7783 -4.8748 4.4729 16 6 -0.2649 -5.0357 5.8807 17 1 -0.5050 -4.2967 6.6308 18 6 0.5064 -6.1293 6.2123 19 7 1.0251 -6.2272 7.4169 20 14 0.8151 -7.4719 4.9507 21 1 2.0693 -7.1780 4.2118 22 1 0.9423 -8.7803 5.6412 23 1 -0.3211 -7.5244 3.9959 24 6 -2.1189 -4.1613 4.2871 25 6 -2.0215 -5.6746 4.0786 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9564 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5490 -2.2724 1.1421 37 1 4.1514 -2.7399 1.8664 38 1 3.8285 -3.4753 3.4549 39 1 2.8654 -5.4679 2.3365 40 1 3.1883 -4.7324 0.7481 41 1 1.0192 -5.4686 3.4449 42 1 -0.1772 -4.6436 2.4172 43 1 1.5675 -6.9968 7.6503 44 1 -2.6297 -3.8084 5.1831 45 1 -2.2388 -3.5380 3.4010 46 1 -2.0773 -6.0461 3.0553 47 1 -2.4679 -6.3176 4.8372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451165439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:58 Heat of formation + Delta-G solvation = -58.465548 kcal Electronic energy + Delta-G solvation = -27645.971783 eV Core-core repulsion = 23955.620185 eV Total energy + Delta-G solvation = -3690.351598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -38.94352 -38.75790 -38.13497 -37.60755 -36.72933 -36.26937 -34.29116 -32.43107 -30.13285 -29.33868 -27.88263 -27.55851 -25.27561 -23.54867 -23.18160 -21.13396 -20.75952 -19.73839 -18.87069 -18.53777 -18.35839 -17.33257 -16.87629 -16.78073 -15.97843 -15.90556 -15.67560 -15.43999 -15.13549 -14.90805 -14.66113 -14.51929 -14.36632 -14.02252 -13.93414 -13.79540 -13.35393 -13.22629 -13.08779 -12.93970 -12.88562 -12.83997 -12.79045 -12.59948 -12.56384 -12.36093 -12.11837 -12.00990 -11.85903 -11.74714 -11.61143 -11.52193 -11.38311 -11.22127 -10.91348 -10.68171 -10.32649 -9.87269 -8.29284 -6.41027 -0.58182 1.26612 1.39625 1.52611 1.63558 1.78249 1.97434 2.36692 2.96102 2.99459 3.05430 3.27382 3.40521 3.69347 3.92611 3.97267 4.04392 4.12385 4.14503 4.21108 4.30990 4.37923 4.47079 4.52684 4.59225 4.67843 4.73443 4.81002 4.88009 4.94168 4.96307 4.97713 5.03376 5.06925 5.14820 5.18901 5.25953 5.27254 5.36735 5.45287 5.54364 5.58839 5.63966 5.67844 5.77891 6.24977 6.55495 6.68662 7.30596 8.87177 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.005385 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.281107 B = 5198.024444 C = 6726.780560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.142 4.142 5 C 0.110 3.890 6 N -0.992 5.992 7 C 0.113 3.887 8 C -0.056 4.056 9 C 0.238 3.762 10 N -0.491 5.491 11 S 2.607 3.393 12 O -0.978 6.978 13 O -0.992 6.992 14 C -0.579 4.579 15 C -0.034 4.034 16 C -0.512 4.512 17 H 0.024 0.976 18 C 0.028 3.972 19 N -0.942 5.942 20 Si 0.907 3.093 21 H -0.250 1.250 22 H -0.298 1.298 23 H -0.198 1.198 24 C -0.175 4.175 25 C -0.159 4.159 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.171 0.829 41 H 0.120 0.880 42 H 0.171 0.829 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 7.249 -23.705 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.181 4.181 5 C -0.013 4.013 6 N -0.829 5.829 7 C -0.014 4.014 8 C -0.097 4.097 9 C -0.079 4.079 10 N -0.169 5.169 11 S 2.705 3.295 12 O -0.968 6.968 13 O -0.982 6.982 14 C -0.711 4.711 15 C -0.037 4.037 16 C -0.550 4.550 17 H 0.042 0.958 18 C -0.171 4.171 19 N -0.580 5.580 20 Si 0.729 3.271 21 H -0.175 1.175 22 H -0.226 1.226 23 H -0.119 1.119 24 C -0.212 4.212 25 C -0.198 4.198 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.188 0.812 41 H 0.138 0.862 42 H 0.189 0.811 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.102 7.199 -22.816 23.950 hybrid contribution -0.110 -0.947 0.869 1.290 sum 0.992 6.251 -21.947 22.841 Atomic orbital electron populations 1.21965 0.95548 1.02474 1.01319 1.21054 0.95666 0.96115 0.97892 1.21863 1.01136 0.96240 1.01498 1.22148 1.01699 0.95889 0.98380 1.21804 1.00595 0.91627 0.87313 1.57568 1.22881 1.69963 1.32507 1.21334 0.83402 0.93626 1.03042 1.20148 0.84095 0.97009 1.08441 1.29333 0.94875 0.92285 0.91411 1.81245 1.14243 1.10582 1.10874 1.04922 0.74184 0.77207 0.73176 1.93479 1.65708 1.51425 1.86202 1.93529 1.64512 1.87899 1.52296 1.30282 1.11209 1.21100 1.08464 1.18747 0.86643 1.06336 0.91965 1.20491 1.32709 1.08206 0.93545 0.95752 1.25910 0.93649 1.00416 0.97161 1.70073 1.34134 1.30887 1.22862 0.86370 0.82066 0.77480 0.81184 1.17472 1.22553 1.11926 1.23071 0.99690 0.95590 1.02877 1.23156 1.01312 0.93206 1.02105 0.91566 0.94474 0.91821 0.88609 0.92318 0.91812 0.94182 0.94180 0.90762 0.85362 0.89297 0.85738 0.90794 0.87484 0.81180 0.86192 0.81116 0.92525 0.90797 0.86650 0.86471 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.95 71.98 0.64 -1.63 16 2 C -0.09 -1.14 2.92 -10.79 -0.03 -1.18 16 3 C -0.15 -2.04 9.19 71.98 0.66 -1.37 16 4 C -0.14 -2.43 5.01 30.60 0.15 -2.27 16 5 C 0.11 1.59 5.01 86.38 0.43 2.02 16 6 N -0.99 -21.52 2.71 -515.78 -1.40 -22.92 16 7 C 0.11 2.14 5.61 86.38 0.48 2.62 16 8 C -0.06 -0.81 6.02 28.79 0.17 -0.63 16 9 C 0.24 5.24 15.43 89.44 1.38 6.62 16 10 N -0.49 -14.24 18.54 20.00 0.37 -13.87 16 11 S 2.61 92.60 5.10 -56.49 -0.29 92.31 16 12 O -0.98 -37.60 16.75 -127.65 -2.14 -39.74 16 13 O -0.99 -47.13 16.20 -127.65 -2.07 -49.20 16 14 C -0.58 -18.56 5.65 71.98 0.41 -18.15 16 15 C -0.03 -1.43 0.79 -52.93 -0.04 -1.47 16 16 C -0.51 -28.63 8.75 25.60 0.22 -28.41 16 17 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 18 C 0.03 1.58 5.47 84.65 0.46 2.05 16 19 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 20 Si 0.91 39.42 24.92 68.60 1.71 41.13 16 21 H -0.25 -9.72 6.99 99.48 0.70 -9.02 16 22 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.20 -7.08 5.80 99.48 0.58 -6.50 16 24 C -0.18 -6.35 9.96 30.62 0.30 -6.04 16 25 C -0.16 -5.48 8.12 30.62 0.25 -5.23 16 26 H 0.07 0.85 6.56 -2.39 -0.02 0.83 16 27 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.04 0.98 7.90 -2.39 -0.02 0.96 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.13 0.62 8.11 -2.39 -0.02 0.60 16 36 H 0.09 1.26 6.03 -2.39 -0.01 1.25 16 37 H 0.12 1.53 8.11 -2.39 -0.02 1.51 16 38 H 0.07 1.94 6.82 -2.39 -0.02 1.92 16 39 H 0.11 1.73 7.21 -2.39 -0.02 1.71 16 40 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 3.78 3.99 -2.39 -0.01 3.77 16 42 H 0.17 3.35 8.09 -2.39 -0.02 3.33 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 45 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -85.24 391.87 2.79 -82.45 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.80 Total: 22.28 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 5.50 Total: -53.08 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -0.73 Total: -96.15 kcal Atomic # 8 Polarization: -84.73 SS G_CDS: -4.21 Total: -88.94 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.71 Total: 41.13 kcal Atomic # 16 Polarization: 92.60 SS G_CDS: -0.29 Total: 92.31 kcal Total: -85.24 2.79 -82.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451165439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.986 kcal (2) G-P(sol) polarization free energy of solvation -85.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds