Wall clock time and date at job start Tue Mar 31 2020 14:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99892 * 2 1 4 4 C 1.53077 * 109.43717 * 119.79570 * 3 2 1 5 5 C 1.53195 * 109.29331 * 181.23880 * 4 3 2 6 6 N 1.46927 * 108.88997 * 305.57397 * 5 4 3 7 7 C 1.34776 * 120.63520 * 233.55944 * 6 5 4 8 8 O 1.21358 * 120.00451 * 171.26130 * 7 6 5 9 9 C 1.49363 * 119.99919 * 351.26618 * 7 6 5 10 10 O 1.21380 * 119.99678 * 353.35440 * 9 7 6 11 11 N 1.34771 * 120.00098 * 173.35333 * 9 7 6 12 12 C 1.39741 * 119.99777 * 183.64194 * 11 9 7 13 13 C 1.39343 * 119.95656 * 324.02190 * 12 11 9 14 14 C 1.38465 * 120.42325 * 179.71880 * 13 12 11 15 15 C 1.37698 * 120.33070 * 0.55075 * 14 13 12 16 16 C 1.40750 * 119.89139 * 359.73051 * 15 14 13 17 17 C 1.41413 * 120.20416 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00291 * 31.44745 * 17 16 15 19 19 C 1.39934 * 119.99667 * 211.45818 * 17 16 15 20 20 N 1.30824 * 119.99918 * 7.58563 * 19 17 16 21 21 Si 1.86798 * 119.99850 * 187.58850 * 19 17 16 22 22 H 1.48501 * 109.47300 * 89.99556 * 21 19 17 23 23 H 1.48493 * 109.47132 * 209.99693 * 21 19 17 24 24 H 1.48503 * 109.47296 * 330.00110 * 21 19 17 25 25 C 1.38301 * 119.95034 * 144.29027 * 12 11 9 26 26 C 1.46926 * 118.73902 * 53.54021 * 6 5 4 27 27 C 1.53034 * 109.46073 * 239.99465 * 3 2 1 28 28 H 1.07999 * 119.99757 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00021 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00149 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.45927 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.39334 * 61.35903 * 4 3 2 33 33 H 1.09000 * 109.62301 * 301.24723 * 4 3 2 34 34 H 1.09001 * 109.58686 * 185.72186 * 5 4 3 35 35 H 1.08995 * 109.59003 * 65.43419 * 5 4 3 36 36 H 0.96997 * 119.99842 * 3.64497 * 11 9 7 37 37 H 1.08001 * 119.78451 * 359.97438 * 13 12 11 38 38 H 1.08000 * 119.83644 * 180.25289 * 14 13 12 39 39 H 1.07996 * 120.05148 * 179.74394 * 15 14 13 40 40 H 0.97008 * 119.99741 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.16531 * 359.97438 * 25 12 11 42 42 H 1.09006 * 109.58656 * 66.17811 * 26 6 5 43 43 H 1.09001 * 109.58831 * 186.45874 * 26 6 5 44 44 H 1.09006 * 109.49488 * 58.68458 * 27 3 2 45 45 H 1.09002 * 109.52731 * 298.60116 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9394 1.3877 1.2527 5 6 3.6801 2.7286 1.2650 6 7 4.4143 2.8781 0.0011 7 6 5.7349 3.1472 0.0017 8 8 6.3619 3.1119 -1.0368 9 6 6.4269 3.4888 1.2805 10 8 5.7819 3.6425 2.2972 11 7 7.7673 3.6263 1.3056 12 6 8.4221 3.8705 2.5157 13 6 7.8207 4.6738 3.4824 14 6 8.4583 4.9175 4.6872 15 6 9.6997 4.3773 4.9387 16 6 10.3222 3.5686 3.9694 17 6 11.5968 3.0100 4.2209 18 1 11.8825 2.7488 5.2292 19 6 12.4879 2.7959 3.1634 20 7 12.2047 3.2461 1.9682 21 14 14.0816 1.8674 3.4585 22 1 13.8576 0.4163 3.2361 23 1 15.1214 2.3575 2.5185 24 1 14.5328 2.0900 4.8557 25 6 9.6686 3.3191 2.7498 26 6 3.6815 2.7282 -1.2635 27 6 2.9433 1.3859 -1.2495 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3550 2.1334 -0.0005 32 1 3.6629 0.5725 1.2428 33 1 2.3143 1.3093 2.1422 34 1 4.3809 2.7513 2.0995 35 1 2.9619 3.5419 1.3688 36 1 8.2775 3.5557 0.4836 37 1 6.8493 5.1058 3.2924 38 1 7.9817 5.5382 5.4314 39 1 10.1947 4.5736 5.8782 40 1 12.8223 3.0973 1.2350 41 1 10.1375 2.6995 1.9997 42 1 2.9616 3.5401 -1.3672 43 1 4.3829 2.7532 -2.0975 44 1 2.3194 1.3046 -2.1396 45 1 3.6684 0.5721 -1.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453683230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:56 Heat of formation + Delta-G solvation = -18.874306 kcal Electronic energy + Delta-G solvation = -27319.214355 eV Core-core repulsion = 23495.135610 eV Total energy + Delta-G solvation = -3824.078744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.93056 -39.18438 -37.91720 -37.24683 -35.14764 -34.22078 -33.28191 -31.42955 -31.13997 -29.61219 -28.77307 -26.20484 -25.29546 -24.09890 -23.26837 -21.48022 -21.20358 -20.21324 -20.07848 -19.46627 -17.71617 -17.48823 -16.78996 -16.01844 -15.66136 -15.30908 -15.16131 -14.85776 -14.76496 -14.66273 -14.30479 -14.15376 -13.93487 -13.46431 -13.05083 -12.86582 -12.76499 -12.53143 -12.39719 -12.31709 -11.71440 -11.58453 -11.42391 -11.21537 -11.16329 -11.08599 -10.99531 -10.80224 -10.64941 -10.56827 -9.97225 -9.81795 -9.63480 -9.44284 -9.21473 -8.85166 -8.72671 -7.38654 -7.13272 -6.68360 -4.43377 1.50531 1.98535 2.43561 2.73512 2.86586 3.07889 3.10796 3.18296 3.48283 3.69747 3.94156 4.38989 4.46247 4.59504 4.66820 4.73982 4.89077 4.96404 5.09558 5.12961 5.27416 5.45339 5.51027 5.56955 5.58247 5.69856 5.71976 5.85046 5.91134 6.08876 6.19118 6.29246 6.33203 6.48385 6.54699 6.60219 6.77316 6.90196 7.01467 7.08018 7.22032 7.46617 7.49926 7.75737 7.84493 7.97435 8.05036 8.21605 8.36854 8.60117 8.85166 8.88566 10.23428 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002583 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.134061 B =10839.421663 C =11233.227350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.064 4.064 4 C -0.126 4.126 5 C 0.068 3.932 6 N -0.584 5.584 7 C 0.512 3.488 8 O -0.523 6.523 9 C 0.499 3.501 10 O -0.502 6.502 11 N -0.624 5.624 12 C 0.129 3.871 13 C -0.217 4.217 14 C -0.091 4.091 15 C -0.216 4.216 16 C 0.118 3.882 17 C -0.465 4.465 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.809 5.809 21 Si 0.912 3.088 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.163 4.163 26 C 0.107 3.893 27 C -0.124 4.124 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.415 0.585 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.279 0.721 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -3.867 -6.191 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.162 4.162 3 C -0.083 4.083 4 C -0.164 4.164 5 C -0.053 4.053 6 N -0.319 5.319 7 C 0.295 3.705 8 O -0.399 6.399 9 C 0.281 3.719 10 O -0.379 6.379 11 N -0.268 5.268 12 C 0.038 3.962 13 C -0.238 4.238 14 C -0.110 4.110 15 C -0.236 4.236 16 C 0.115 3.885 17 C -0.495 4.495 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.435 5.435 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.184 4.184 26 C -0.015 4.015 27 C -0.162 4.162 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.460 -3.768 -6.302 18.941 hybrid contribution 0.839 -0.478 -0.478 1.078 sum -16.621 -4.246 -6.781 18.446 Atomic orbital electron populations 1.23837 0.95899 1.01752 1.01722 1.22957 0.95862 0.98229 0.99172 1.20420 0.96809 0.95689 0.95382 1.21976 0.98692 0.98218 0.97530 1.22917 0.98353 0.96428 0.87626 1.47911 1.07298 1.68295 1.08358 1.20250 0.82636 0.78113 0.89546 1.90741 1.64684 1.50907 1.33611 1.19998 0.83623 0.79554 0.88682 1.90476 1.63570 1.49202 1.34700 1.43203 1.05797 1.66555 1.11245 1.17672 0.93731 0.99548 0.85267 1.20436 1.01510 1.06200 0.95666 1.20454 0.95196 0.99567 0.95792 1.21170 0.97142 1.04128 1.01124 1.17390 0.92031 0.88825 0.90274 1.19515 0.98133 1.37094 0.94794 0.90365 1.25860 1.00162 0.93732 0.94550 1.69753 1.36533 1.35946 1.01308 0.86243 0.80617 0.80081 0.79331 1.19451 1.20342 1.18711 1.21198 0.92838 1.03605 1.00798 1.21714 0.95837 0.97206 0.86717 1.21905 0.98734 0.97661 0.97886 0.88646 0.88600 0.87427 0.90630 0.91379 0.90341 0.83695 0.91432 0.74805 0.87475 0.88761 0.88608 0.90992 0.85634 0.91098 0.88641 0.90529 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 14.32 29.01 0.42 -0.95 16 2 C -0.14 -1.12 8.77 -36.02 -0.32 -1.43 16 3 C -0.06 -0.53 2.43 -91.71 -0.22 -0.76 16 4 C -0.13 -1.21 5.35 -26.59 -0.14 -1.35 16 5 C 0.07 0.79 5.97 -3.71 -0.02 0.77 16 6 N -0.58 -7.53 2.97 -173.30 -0.52 -8.04 16 7 C 0.51 8.19 7.73 -11.63 -0.09 8.10 16 8 O -0.52 -9.22 15.92 5.49 0.09 -9.14 16 9 C 0.50 9.03 7.57 -11.63 -0.09 8.94 16 10 O -0.50 -9.49 10.69 5.47 0.06 -9.43 16 11 N -0.62 -12.27 5.32 -10.34 -0.05 -12.32 16 12 C 0.13 2.96 6.26 -83.82 -0.52 2.44 16 13 C -0.22 -4.93 8.69 -39.09 -0.34 -5.27 16 14 C -0.09 -2.04 10.01 -39.69 -0.40 -2.44 16 15 C -0.22 -5.18 9.79 -38.83 -0.38 -5.56 16 16 C 0.12 3.06 5.53 -106.85 -0.59 2.47 16 17 C -0.46 -12.06 9.06 -37.74 -0.34 -12.40 16 18 H 0.08 1.95 7.86 -52.48 -0.41 1.54 16 19 C 0.07 1.80 5.29 -17.35 -0.09 1.70 16 20 N -0.81 -20.49 10.87 55.55 0.60 -19.89 16 21 Si 0.91 18.59 29.57 -169.99 -5.03 13.56 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.16 -4.10 8.55 -38.67 -0.33 -4.43 16 26 C 0.11 1.10 6.44 -3.71 -0.02 1.07 16 27 C -0.12 -1.06 5.35 -26.61 -0.14 -1.20 16 28 H 0.10 0.61 7.83 -52.49 -0.41 0.20 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.11 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.08 0.59 7.78 -51.93 -0.40 0.19 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.15 2.07 4.32 -54.78 -0.24 1.83 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.42 7.67 8.30 -40.82 -0.34 7.33 16 37 H 0.11 2.35 6.30 -52.49 -0.33 2.02 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.13 3.24 6.32 -52.49 -0.33 2.91 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.07 7.01 -51.93 -0.36 0.70 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -28.01 368.87 -9.11 -37.12 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.19 Total: 12.87 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.63 Total: -10.29 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.03 Total: -40.25 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.57 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.01 -9.11 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453683230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.243 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds