Wall clock time and date at job start Tue Mar 31 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99892 * 2 1 4 4 C 1.53077 * 109.43717 * 119.79570 * 3 2 1 5 5 C 1.53195 * 109.29331 * 181.23880 * 4 3 2 6 6 N 1.46927 * 108.88997 * 305.57397 * 5 4 3 7 7 C 1.34776 * 120.63520 * 233.55944 * 6 5 4 8 8 O 1.21358 * 120.00451 * 171.26130 * 7 6 5 9 9 C 1.49363 * 119.99919 * 351.26618 * 7 6 5 10 10 O 1.21380 * 119.99678 * 353.35440 * 9 7 6 11 11 N 1.34771 * 120.00098 * 173.35333 * 9 7 6 12 12 C 1.39741 * 119.99777 * 183.64194 * 11 9 7 13 13 C 1.39343 * 119.95656 * 324.02190 * 12 11 9 14 14 C 1.38465 * 120.42325 * 179.71880 * 13 12 11 15 15 C 1.37698 * 120.33070 * 0.55075 * 14 13 12 16 16 C 1.40750 * 119.89139 * 359.73051 * 15 14 13 17 17 C 1.41413 * 120.20416 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00291 * 31.44745 * 17 16 15 19 19 C 1.39934 * 119.99667 * 211.45818 * 17 16 15 20 20 N 1.30824 * 119.99918 * 7.58563 * 19 17 16 21 21 Si 1.86798 * 119.99850 * 187.58850 * 19 17 16 22 22 H 1.48501 * 109.47300 * 89.99556 * 21 19 17 23 23 H 1.48493 * 109.47132 * 209.99693 * 21 19 17 24 24 H 1.48503 * 109.47296 * 330.00110 * 21 19 17 25 25 C 1.38301 * 119.95034 * 144.29027 * 12 11 9 26 26 C 1.46926 * 118.73902 * 53.54021 * 6 5 4 27 27 C 1.53034 * 109.46073 * 239.99465 * 3 2 1 28 28 H 1.07999 * 119.99757 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00021 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00149 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.45927 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.39334 * 61.35903 * 4 3 2 33 33 H 1.09000 * 109.62301 * 301.24723 * 4 3 2 34 34 H 1.09001 * 109.58686 * 185.72186 * 5 4 3 35 35 H 1.08995 * 109.59003 * 65.43419 * 5 4 3 36 36 H 0.96997 * 119.99842 * 3.64497 * 11 9 7 37 37 H 1.08001 * 119.78451 * 359.97438 * 13 12 11 38 38 H 1.08000 * 119.83644 * 180.25289 * 14 13 12 39 39 H 1.07996 * 120.05148 * 179.74394 * 15 14 13 40 40 H 0.97008 * 119.99741 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.16531 * 359.97438 * 25 12 11 42 42 H 1.09006 * 109.58656 * 66.17811 * 26 6 5 43 43 H 1.09001 * 109.58831 * 186.45874 * 26 6 5 44 44 H 1.09006 * 109.49488 * 58.68458 * 27 3 2 45 45 H 1.09002 * 109.52731 * 298.60116 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9394 1.3877 1.2527 5 6 3.6801 2.7286 1.2650 6 7 4.4143 2.8781 0.0011 7 6 5.7349 3.1472 0.0017 8 8 6.3619 3.1119 -1.0368 9 6 6.4269 3.4888 1.2805 10 8 5.7819 3.6425 2.2972 11 7 7.7673 3.6263 1.3056 12 6 8.4221 3.8705 2.5157 13 6 7.8207 4.6738 3.4824 14 6 8.4583 4.9175 4.6872 15 6 9.6997 4.3773 4.9387 16 6 10.3222 3.5686 3.9694 17 6 11.5968 3.0100 4.2209 18 1 11.8825 2.7488 5.2292 19 6 12.4879 2.7959 3.1634 20 7 12.2047 3.2461 1.9682 21 14 14.0816 1.8674 3.4585 22 1 13.8576 0.4163 3.2361 23 1 15.1214 2.3575 2.5185 24 1 14.5328 2.0900 4.8557 25 6 9.6686 3.3191 2.7498 26 6 3.6815 2.7282 -1.2635 27 6 2.9433 1.3859 -1.2495 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3550 2.1334 -0.0005 32 1 3.6629 0.5725 1.2428 33 1 2.3143 1.3093 2.1422 34 1 4.3809 2.7513 2.0995 35 1 2.9619 3.5419 1.3688 36 1 8.2775 3.5557 0.4836 37 1 6.8493 5.1058 3.2924 38 1 7.9817 5.5382 5.4314 39 1 10.1947 4.5736 5.8782 40 1 12.8223 3.0973 1.2350 41 1 10.1375 2.6995 1.9997 42 1 2.9616 3.5401 -1.3672 43 1 4.3829 2.7532 -2.0975 44 1 2.3194 1.3046 -2.1396 45 1 3.6684 0.5721 -1.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453683230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:55 Heat of formation + Delta-G solvation = -33.416872 kcal Electronic energy + Delta-G solvation = -27319.844968 eV Core-core repulsion = 23495.135610 eV Total energy + Delta-G solvation = -3824.709357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25220 -40.51683 -39.04642 -38.88896 -36.40577 -35.55504 -35.02474 -32.25809 -31.94887 -31.48446 -30.50732 -27.39565 -27.10157 -25.18458 -24.25647 -23.14839 -22.58878 -21.58580 -20.86495 -20.58806 -19.32556 -18.92882 -18.09055 -17.54761 -17.16220 -16.75986 -16.48778 -16.26732 -15.84805 -15.68913 -15.51342 -15.19811 -14.95066 -14.80982 -14.60325 -14.40762 -14.16440 -13.64324 -13.54455 -13.47678 -13.09105 -12.96183 -12.83447 -12.71876 -12.53485 -12.25087 -12.21727 -11.89799 -11.77650 -11.73050 -11.61204 -11.43504 -11.18540 -10.99327 -10.34907 -10.02878 -9.87553 -9.28271 -8.93884 -8.52441 -6.38908 0.09087 0.92955 1.04919 1.23999 1.40599 1.43291 1.51174 1.54092 2.04264 2.23352 2.41561 2.77995 3.18756 3.66655 3.72075 3.76135 3.96590 4.09397 4.30183 4.31989 4.43241 4.45061 4.48648 4.66697 4.71743 4.75668 4.83025 4.85686 4.89783 4.93788 5.08831 5.09318 5.12054 5.13975 5.16047 5.31670 5.36811 5.38706 5.71777 5.72878 5.79189 5.89796 5.95539 5.99145 6.08382 6.19902 6.39531 6.61925 6.64994 6.87301 6.94838 6.99616 8.39844 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002583 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.134061 B =10839.421663 C =11233.227350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.058 4.058 4 C -0.121 4.121 5 C 0.067 3.933 6 N -0.573 5.573 7 C 0.513 3.487 8 O -0.545 6.545 9 C 0.500 3.500 10 O -0.509 6.509 11 N -0.630 5.630 12 C 0.135 3.865 13 C -0.223 4.223 14 C -0.087 4.087 15 C -0.231 4.231 16 C 0.089 3.911 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.031 3.969 20 N -0.836 5.836 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.186 4.186 26 C 0.103 3.897 27 C -0.118 4.118 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.418 0.582 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.285 0.715 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.441 -4.083 -6.483 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.077 4.077 4 C -0.159 4.159 5 C -0.054 4.054 6 N -0.306 5.306 7 C 0.295 3.705 8 O -0.424 6.424 9 C 0.283 3.717 10 O -0.386 6.386 11 N -0.275 5.275 12 C 0.043 3.957 13 C -0.243 4.243 14 C -0.105 4.105 15 C -0.251 4.251 16 C 0.086 3.914 17 C -0.528 4.528 18 H 0.096 0.904 19 C -0.182 4.182 20 N -0.463 5.463 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.208 4.208 26 C -0.018 4.018 27 C -0.156 4.156 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.256 0.744 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.519 -3.987 -6.594 20.984 hybrid contribution 1.248 -0.388 -0.390 1.364 sum -18.271 -4.375 -6.984 20.043 Atomic orbital electron populations 1.24009 0.95628 1.02633 0.99966 1.22896 0.96179 0.97797 1.00746 1.20369 0.96597 0.96596 0.94099 1.21930 0.98591 0.96222 0.99144 1.22901 0.97959 0.98439 0.86096 1.48063 1.06227 1.66207 1.10077 1.19811 0.83670 0.78863 0.88121 1.90736 1.65361 1.52558 1.33714 1.20443 0.82943 0.78695 0.89615 1.90495 1.63677 1.49022 1.35410 1.43187 1.06594 1.67334 1.10371 1.17719 0.93161 0.98510 0.86333 1.20659 1.01873 1.05975 0.95829 1.20804 0.94488 0.98944 0.96284 1.21360 0.98015 1.04412 1.01298 1.17780 0.92714 0.89668 0.91257 1.19773 0.98926 1.38720 0.95378 0.90379 1.26703 1.03375 0.94074 0.94013 1.69826 1.37872 1.36542 1.02105 0.85164 0.76302 0.78608 0.79389 1.18943 1.19504 1.18212 1.21102 0.94029 1.04908 1.00718 1.21987 0.95836 0.99197 0.84770 1.21879 0.98570 0.95932 0.99184 0.87773 0.87765 0.87759 0.89315 0.92789 0.89095 0.86248 0.89561 0.74429 0.86519 0.85431 0.87573 0.90400 0.87224 0.88604 0.89660 0.88333 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 67.78 0.97 -1.07 16 2 C -0.16 -2.07 8.77 25.65 0.22 -1.84 16 3 C -0.06 -0.81 2.43 -11.50 -0.03 -0.83 16 4 C -0.12 -2.12 5.35 30.69 0.16 -1.95 16 5 C 0.07 1.46 5.97 86.36 0.52 1.98 16 6 N -0.57 -14.09 2.97 -820.57 -2.44 -16.53 16 7 C 0.51 16.37 7.73 87.24 0.67 17.04 16 8 O -0.55 -19.36 15.92 -3.27 -0.05 -19.41 16 9 C 0.50 18.23 7.57 87.24 0.66 18.89 16 10 O -0.51 -19.16 10.69 -3.34 -0.04 -19.19 16 11 N -0.63 -25.43 5.32 -304.98 -1.62 -27.05 16 12 C 0.14 6.34 6.26 38.16 0.24 6.58 16 13 C -0.22 -10.06 8.69 22.59 0.20 -9.86 16 14 C -0.09 -3.81 10.01 22.20 0.22 -3.59 16 15 C -0.23 -11.22 9.79 22.76 0.22 -10.99 16 16 C 0.09 4.76 5.53 -21.31 -0.12 4.64 16 17 C -0.50 -26.59 9.06 23.46 0.21 -26.38 16 18 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 19 C 0.03 1.58 5.29 85.25 0.45 2.03 16 20 N -0.84 -43.56 10.87 21.82 0.24 -43.32 16 21 Si 0.98 38.43 29.57 68.60 2.03 40.46 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 C -0.19 -9.72 8.55 22.86 0.20 -9.52 16 26 C 0.10 1.89 6.44 86.36 0.56 2.45 16 27 C -0.12 -1.74 5.35 30.67 0.16 -1.58 16 28 H 0.10 0.97 7.83 -2.91 -0.02 0.95 16 29 H 0.10 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.10 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.09 1.04 7.78 -2.39 -0.02 1.02 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 3.34 4.32 -47.52 -0.21 3.14 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.42 16.11 8.30 -92.71 -0.77 15.34 16 37 H 0.12 5.02 6.30 -2.91 -0.02 5.00 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 41 H 0.11 5.98 6.32 -2.91 -0.02 5.96 16 42 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.08 1.80 7.01 -2.39 -0.02 1.78 16 44 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -61.44 368.87 3.69 -57.75 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: 0.05 Total: 41.30 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.52 Total: -14.01 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.82 Total: -86.90 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.09 Total: -38.60 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -61.44 3.69 -57.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453683230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.332 kcal (2) G-P(sol) polarization free energy of solvation -61.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds