Wall clock time and date at job start Tue Mar 31 2020 15:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46951 * 2 1 4 4 C 1.52996 * 109.47370 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.47065 * 60.00055 * 4 2 1 6 6 C 1.38362 * 119.84589 * 269.72658 * 5 4 2 7 7 C 1.37951 * 120.15183 * 179.76685 * 6 5 4 8 8 C 1.39628 * 119.84160 * 0.52561 * 7 6 5 9 9 C 1.43208 * 120.14776 * 179.69907 * 8 7 6 10 10 N 7.49529 * 76.34445 * 290.09536 * 2 1 3 11 11 C 1.39631 * 119.70101 * 359.72999 * 8 7 6 12 12 C 1.37946 * 119.84651 * 359.97438 * 11 8 7 13 13 C 1.50702 * 109.46982 * 119.99855 * 2 1 3 14 14 O 1.21282 * 119.99821 * 126.53878 * 13 2 1 15 15 N 1.34779 * 119.99915 * 306.54236 * 13 2 1 16 16 C 1.47582 * 134.49071 * 175.05337 * 15 13 2 17 17 C 1.53949 * 86.11514 * 155.35475 * 16 15 13 18 18 O 1.42895 * 113.73864 * 269.14858 * 17 16 15 19 19 C 1.50704 * 113.74067 * 137.95145 * 17 16 15 20 20 H 1.08003 * 119.99600 * 0.02562 * 19 17 16 21 21 C 1.37870 * 119.99892 * 179.97438 * 19 17 16 22 22 N 1.31511 * 120.00159 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00047 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47105 * 270.00099 * 23 21 19 25 25 H 1.48500 * 109.47086 * 29.99997 * 23 21 19 26 26 H 1.48502 * 109.47421 * 150.00375 * 23 21 19 27 27 C 1.47577 * 134.49450 * 355.03995 * 15 13 2 28 28 H 1.08998 * 109.47598 * 300.00026 * 1 2 3 29 29 H 1.09001 * 109.47413 * 60.00303 * 1 2 3 30 30 H 1.08999 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47501 * 185.23907 * 3 2 1 32 32 H 1.09000 * 109.47714 * 305.23775 * 3 2 1 33 33 H 1.09004 * 109.47400 * 65.24408 * 3 2 1 34 34 H 1.09001 * 109.47191 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.46877 * 300.00057 * 4 2 1 36 36 H 1.08008 * 119.92487 * 359.97438 * 6 5 4 37 37 H 1.08004 * 120.07710 * 180.25572 * 7 6 5 38 38 H 1.08006 * 120.07468 * 179.97438 * 11 8 7 39 39 H 1.07997 * 119.92316 * 180.02562 * 12 11 8 40 40 H 1.09000 * 113.77010 * 41.05531 * 16 15 13 41 41 H 1.09001 * 113.86937 * 269.66510 * 16 15 13 42 42 H 0.96705 * 113.99937 * 178.07956 * 18 17 16 43 43 H 0.97004 * 120.00241 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.76573 * 90.34554 * 27 15 13 45 45 H 1.08997 * 113.77382 * 318.95261 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 6 0.3311 -0.3830 -3.0453 7 6 -0.1370 0.2662 -4.1688 8 6 0.6152 1.2936 -4.7417 9 6 0.1386 1.9677 -5.9119 10 7 -0.2395 2.5025 -6.8400 11 6 1.8346 1.6604 -4.1688 12 6 2.2878 1.0069 -3.0417 13 6 2.0323 -0.7104 1.2305 14 8 2.8240 -1.6229 1.1232 15 7 1.6017 -0.3317 2.4502 16 6 1.7996 -0.8412 3.8211 17 6 1.4912 0.5935 4.2865 18 8 2.6499 1.4212 4.4057 19 6 0.5951 0.6595 5.4964 20 1 0.2345 -0.2512 5.9515 21 6 0.2366 1.8822 6.0228 22 7 0.6761 2.9911 5.4689 23 14 -0.8747 1.9641 7.5221 24 1 -2.2929 2.0155 7.0848 25 1 -0.6597 0.7598 8.3639 26 1 -0.5550 3.1819 8.3094 27 6 0.7431 0.7589 2.9514 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1259 1.4440 -0.0938 32 1 1.6021 1.9827 -0.8393 33 1 1.7553 1.9285 0.9332 34 1 3.1301 -0.7216 -1.2489 35 1 1.6767 -1.7489 -1.2491 36 1 -0.2473 -1.1813 -2.6041 37 1 -1.0811 -0.0225 -4.6069 38 1 2.4217 2.4540 -4.6071 39 1 3.2306 1.2898 -2.5973 40 1 2.8212 -1.1601 4.0281 41 1 1.0542 -1.5734 4.1315 42 1 2.4576 2.3315 4.6695 43 1 0.4242 3.8514 5.8395 44 1 -0.3137 0.4970 3.0045 45 1 0.9209 1.7175 2.4639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456007036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:02 Heat of formation + Delta-G solvation = -4.853119 kcal Electronic energy + Delta-G solvation = -27753.265738 eV Core-core repulsion = 23929.794998 eV Total energy + Delta-G solvation = -3823.470740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.49032 -39.53020 -37.78008 -36.79422 -35.41962 -34.00492 -32.23778 -31.80312 -31.44808 -28.59484 -27.28402 -27.26955 -25.44701 -25.30826 -23.42352 -22.96113 -21.36235 -19.43399 -19.18743 -18.11070 -17.34852 -16.26752 -15.90804 -15.89677 -15.41974 -15.10451 -14.81170 -14.76409 -14.31743 -14.16973 -13.99929 -13.77851 -13.68794 -13.29056 -13.07879 -12.98860 -12.82758 -12.45142 -12.27331 -12.13211 -12.02595 -11.90199 -11.77474 -11.54057 -11.40293 -11.22378 -11.12430 -11.07233 -10.82567 -10.77334 -10.52023 -10.29822 -9.57850 -9.29359 -9.16563 -8.94395 -8.79712 -8.41101 -7.85364 -6.43178 -4.53222 0.48366 1.05211 2.39601 2.66605 3.11336 3.16243 3.20346 3.23435 3.46910 3.61316 3.63523 4.15289 4.50882 4.52308 4.58075 4.79339 4.82561 4.95364 4.98072 5.05795 5.16640 5.30210 5.44169 5.54949 5.58502 5.69514 5.74863 5.78491 5.85027 5.93123 5.95655 5.99567 6.02494 6.06471 6.14660 6.21511 6.28220 6.40193 6.40790 6.48381 6.54139 6.64701 6.70459 7.06363 7.20802 7.59599 7.78610 8.46664 8.49831 8.72675 9.18163 9.42339 10.63284 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002719 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.299224 B =10294.622679 C =10977.543641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.064 4.064 5 C -0.036 4.036 6 C -0.117 4.117 7 C -0.068 4.068 8 C -0.043 4.043 9 C 0.259 3.741 10 N -0.426 5.426 11 C -0.067 4.067 12 C -0.115 4.115 13 C 0.538 3.462 14 O -0.566 6.566 15 N -0.627 5.627 16 C 0.110 3.890 17 C 0.239 3.761 18 O -0.573 6.573 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.284 1.284 27 C 0.077 3.923 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.273 0.727 44 H 0.081 0.919 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -2.812 -13.685 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 C -0.204 4.204 4 C -0.102 4.102 5 C -0.037 4.037 6 C -0.135 4.135 7 C -0.089 4.089 8 C -0.046 4.046 9 C -0.057 4.057 10 N -0.101 5.101 11 C -0.088 4.088 12 C -0.133 4.133 13 C 0.327 3.673 14 O -0.446 6.446 15 N -0.359 5.359 16 C -0.012 4.012 17 C 0.197 3.803 18 O -0.385 6.385 19 C -0.575 4.575 20 H 0.089 0.911 21 C -0.130 4.130 22 N -0.539 5.539 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.196 1.196 26 H -0.209 1.209 27 C -0.046 4.046 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.248 0.752 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.029 -2.843 -15.519 15.811 hybrid contribution -0.871 0.510 1.242 1.600 sum -1.900 -2.333 -14.277 14.591 Atomic orbital electron populations 1.22030 0.92782 1.02401 1.03320 1.20581 0.97221 0.96812 0.92417 1.22001 1.01337 0.93657 1.03377 1.20570 1.01973 0.98575 0.89074 1.20203 0.93716 0.94481 0.95281 1.21071 0.96075 1.00677 0.95649 1.21147 0.98940 0.93636 0.95142 1.15980 0.97071 0.99017 0.92525 1.25793 0.93511 0.93366 0.92982 1.81254 1.08345 1.09256 1.11290 1.21160 0.93794 0.98756 0.95088 1.21090 1.00750 0.95976 0.95527 1.19986 0.81151 0.82902 0.83233 1.90627 1.35754 1.31946 1.86285 1.50077 1.48964 1.31887 1.04997 1.23460 1.01098 0.98667 0.78006 1.19844 0.83702 0.86112 0.90645 1.86062 1.32673 1.28192 1.91573 1.21514 1.29493 0.93388 1.13062 0.91113 1.25053 0.95516 0.95287 0.97134 1.69308 1.45399 0.98081 1.41065 0.86348 0.80329 0.77950 0.81993 1.20332 1.19568 1.20910 1.24381 0.95127 0.88744 0.96341 0.91139 0.91458 0.92410 0.92207 0.91587 0.90978 0.89610 0.89990 0.84800 0.85112 0.85076 0.84714 0.91212 0.89729 0.75215 0.91645 0.90142 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.71 37.16 0.29 -1.47 16 2 C -0.07 -0.90 0.56 -155.66 -0.09 -0.99 16 3 C -0.15 -1.88 7.63 37.15 0.28 -1.60 16 4 C -0.06 -0.73 3.77 -27.88 -0.11 -0.84 16 5 C -0.04 -0.32 4.02 -104.53 -0.42 -0.74 16 6 C -0.12 -0.92 7.87 -39.64 -0.31 -1.23 16 7 C -0.07 -0.51 9.76 -39.17 -0.38 -0.89 16 8 C -0.04 -0.35 5.73 -106.93 -0.61 -0.97 16 9 C 0.26 2.62 15.33 -22.47 -0.34 2.27 16 10 N -0.43 -5.31 18.54 41.84 0.78 -4.53 16 11 C -0.07 -0.52 9.76 -39.17 -0.38 -0.90 16 12 C -0.12 -0.94 7.99 -39.65 -0.32 -1.26 16 13 C 0.54 9.84 6.72 -10.98 -0.07 9.76 16 14 O -0.57 -11.98 16.71 5.56 0.09 -11.89 16 15 N -0.63 -12.14 3.51 -178.32 -0.63 -12.76 16 16 C 0.11 2.27 8.23 -2.97 -0.02 2.25 16 17 C 0.24 5.40 1.44 -90.85 -0.13 5.27 16 18 O -0.57 -14.06 13.48 -35.23 -0.48 -14.54 16 19 C -0.54 -12.84 8.62 -34.44 -0.30 -13.14 16 20 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 21 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 22 N -0.90 -21.77 11.08 55.43 0.61 -21.15 16 23 Si 0.91 18.81 29.54 -169.99 -5.02 13.79 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C 0.08 1.50 5.69 -2.98 -0.02 1.48 16 28 H 0.07 0.93 5.66 -51.93 -0.29 0.64 16 29 H 0.07 0.67 6.19 -51.93 -0.32 0.35 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 33 H 0.07 1.08 5.48 -51.93 -0.28 0.79 16 34 H 0.09 1.04 7.97 -51.93 -0.41 0.62 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.13 0.90 8.03 -52.48 -0.42 0.48 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 0.98 8.02 -52.49 -0.42 0.56 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 42 H 0.39 9.74 6.46 45.56 0.29 10.04 16 43 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 44 H 0.08 1.52 7.73 -51.93 -0.40 1.11 16 45 H 0.07 1.39 6.00 -51.93 -0.31 1.08 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -28.09 371.31 -7.49 -35.58 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.41 Total: 11.27 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.03 Total: -1.35 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.76 Total: -38.45 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.38 Total: -26.43 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.09 -7.49 -35.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456007036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.725 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds