Wall clock time and date at job start Tue Mar 31 2020 15:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46951 * 2 1 4 4 C 1.52996 * 109.47370 * 239.99851 * 2 1 3 5 5 C 1.50702 * 109.47065 * 60.00055 * 4 2 1 6 6 C 1.38362 * 119.84589 * 269.72658 * 5 4 2 7 7 C 1.37951 * 120.15183 * 179.76685 * 6 5 4 8 8 C 1.39628 * 119.84160 * 0.52561 * 7 6 5 9 9 C 1.43208 * 120.14776 * 179.69907 * 8 7 6 10 10 N 7.49529 * 76.34445 * 290.09536 * 2 1 3 11 11 C 1.39631 * 119.70101 * 359.72999 * 8 7 6 12 12 C 1.37946 * 119.84651 * 359.97438 * 11 8 7 13 13 C 1.50702 * 109.46982 * 119.99855 * 2 1 3 14 14 O 1.21282 * 119.99821 * 126.53878 * 13 2 1 15 15 N 1.34779 * 119.99915 * 306.54236 * 13 2 1 16 16 C 1.47582 * 134.49071 * 175.05337 * 15 13 2 17 17 C 1.53949 * 86.11514 * 155.35475 * 16 15 13 18 18 O 1.42895 * 113.73864 * 269.14858 * 17 16 15 19 19 C 1.50704 * 113.74067 * 137.95145 * 17 16 15 20 20 H 1.08003 * 119.99600 * 0.02562 * 19 17 16 21 21 C 1.37870 * 119.99892 * 179.97438 * 19 17 16 22 22 N 1.31511 * 120.00159 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00047 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47105 * 270.00099 * 23 21 19 25 25 H 1.48500 * 109.47086 * 29.99997 * 23 21 19 26 26 H 1.48502 * 109.47421 * 150.00375 * 23 21 19 27 27 C 1.47577 * 134.49450 * 355.03995 * 15 13 2 28 28 H 1.08998 * 109.47598 * 300.00026 * 1 2 3 29 29 H 1.09001 * 109.47413 * 60.00303 * 1 2 3 30 30 H 1.08999 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47501 * 185.23907 * 3 2 1 32 32 H 1.09000 * 109.47714 * 305.23775 * 3 2 1 33 33 H 1.09004 * 109.47400 * 65.24408 * 3 2 1 34 34 H 1.09001 * 109.47191 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.46877 * 300.00057 * 4 2 1 36 36 H 1.08008 * 119.92487 * 359.97438 * 6 5 4 37 37 H 1.08004 * 120.07710 * 180.25572 * 7 6 5 38 38 H 1.08006 * 120.07468 * 179.97438 * 11 8 7 39 39 H 1.07997 * 119.92316 * 180.02562 * 12 11 8 40 40 H 1.09000 * 113.77010 * 41.05531 * 16 15 13 41 41 H 1.09001 * 113.86937 * 269.66510 * 16 15 13 42 42 H 0.96705 * 113.99937 * 178.07956 * 18 17 16 43 43 H 0.97004 * 120.00241 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.76573 * 90.34554 * 27 15 13 45 45 H 1.08997 * 113.77382 * 318.95261 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 6 0.3311 -0.3830 -3.0453 7 6 -0.1370 0.2662 -4.1688 8 6 0.6152 1.2936 -4.7417 9 6 0.1386 1.9677 -5.9119 10 7 -0.2395 2.5025 -6.8400 11 6 1.8346 1.6604 -4.1688 12 6 2.2878 1.0069 -3.0417 13 6 2.0323 -0.7104 1.2305 14 8 2.8240 -1.6229 1.1232 15 7 1.6017 -0.3317 2.4502 16 6 1.7996 -0.8412 3.8211 17 6 1.4912 0.5935 4.2865 18 8 2.6499 1.4212 4.4057 19 6 0.5951 0.6595 5.4964 20 1 0.2345 -0.2512 5.9515 21 6 0.2366 1.8822 6.0228 22 7 0.6761 2.9911 5.4689 23 14 -0.8747 1.9641 7.5221 24 1 -2.2929 2.0155 7.0848 25 1 -0.6597 0.7598 8.3639 26 1 -0.5550 3.1819 8.3094 27 6 0.7431 0.7589 2.9514 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1259 1.4440 -0.0938 32 1 1.6021 1.9827 -0.8393 33 1 1.7553 1.9285 0.9332 34 1 3.1301 -0.7216 -1.2489 35 1 1.6767 -1.7489 -1.2491 36 1 -0.2473 -1.1813 -2.6041 37 1 -1.0811 -0.0225 -4.6069 38 1 2.4217 2.4540 -4.6071 39 1 3.2306 1.2898 -2.5973 40 1 2.8212 -1.1601 4.0281 41 1 1.0542 -1.5734 4.1315 42 1 2.4576 2.3315 4.6695 43 1 0.4242 3.8514 5.8395 44 1 -0.3137 0.4970 3.0045 45 1 0.9209 1.7175 2.4639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456007036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:01 Heat of formation + Delta-G solvation = -20.832504 kcal Electronic energy + Delta-G solvation = -27753.958656 eV Core-core repulsion = 23929.794998 eV Total energy + Delta-G solvation = -3824.163658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67195 -40.56483 -39.22795 -37.75110 -36.51198 -35.77296 -34.09379 -32.64997 -32.04575 -30.16904 -28.26828 -28.20690 -27.16281 -26.89634 -24.39079 -23.56124 -22.57826 -20.94487 -19.86493 -19.64793 -19.03133 -17.59342 -17.36818 -16.81771 -16.61953 -16.27059 -16.21545 -15.86801 -15.46003 -15.26829 -15.09737 -14.73349 -14.66617 -14.39209 -14.34976 -14.05690 -13.87617 -13.79359 -13.55473 -13.40657 -13.35226 -13.13156 -12.91998 -12.75009 -12.72657 -12.57500 -12.26021 -12.19680 -12.11834 -11.91254 -11.84713 -11.78053 -11.26865 -10.77473 -10.56479 -10.12281 -9.87674 -9.64776 -9.48078 -8.23637 -6.39800 -0.19082 0.47230 1.47584 1.52056 1.60057 1.62208 1.71263 1.89560 2.07313 2.42846 2.89183 2.92657 2.99249 3.37920 3.77384 3.83883 3.84121 4.03469 4.06283 4.07373 4.19838 4.26520 4.47187 4.47830 4.52263 4.61050 4.72576 4.76222 4.80758 4.83696 4.87833 4.90547 4.91323 4.98307 5.12247 5.14572 5.17801 5.29604 5.31692 5.34250 5.39967 5.41561 5.69994 5.76355 5.91819 5.97324 6.45243 6.65097 6.94667 7.22098 7.34128 7.51464 8.81783 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002719 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.299224 B =10294.622679 C =10977.543641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.056 4.056 5 C -0.041 4.041 6 C -0.116 4.116 7 C -0.061 4.061 8 C -0.049 4.049 9 C 0.281 3.719 10 N -0.472 5.472 11 C -0.062 4.062 12 C -0.118 4.118 13 C 0.531 3.469 14 O -0.598 6.598 15 N -0.628 5.628 16 C 0.107 3.893 17 C 0.217 3.783 18 O -0.587 6.587 19 C -0.554 4.554 20 H 0.070 0.930 21 C 0.035 3.965 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.285 1.285 27 C 0.097 3.903 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.388 0.612 43 H 0.275 0.725 44 H 0.090 0.910 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 -2.768 -14.691 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.094 4.094 5 C -0.042 4.042 6 C -0.133 4.133 7 C -0.081 4.081 8 C -0.052 4.052 9 C -0.033 4.033 10 N -0.148 5.148 11 C -0.082 4.082 12 C -0.136 4.136 13 C 0.322 3.678 14 O -0.481 6.481 15 N -0.360 5.360 16 C -0.015 4.015 17 C 0.176 3.824 18 O -0.400 6.400 19 C -0.592 4.592 20 H 0.088 0.912 21 C -0.166 4.166 22 N -0.555 5.555 23 Si 0.790 3.210 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.211 1.211 27 C -0.025 4.025 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.243 0.757 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.348 -2.802 -16.538 16.938 hybrid contribution -0.384 0.450 1.576 1.683 sum -2.732 -2.352 -14.963 15.391 Atomic orbital electron populations 1.22022 0.91210 1.03006 1.03843 1.20608 0.98361 0.96615 0.90724 1.21971 1.01373 0.93245 1.03260 1.20436 1.01295 0.98529 0.89138 1.20037 0.94525 0.94938 0.94707 1.21199 0.95654 1.00878 0.95606 1.21326 0.99390 0.92769 0.94616 1.16079 0.97606 0.99441 0.92107 1.25995 0.92319 0.92338 0.92617 1.81282 1.09889 1.10831 1.12780 1.21301 0.93530 0.98790 0.94606 1.21179 1.01013 0.95765 0.95669 1.20955 0.80256 0.82604 0.83997 1.90604 1.37135 1.33566 1.86771 1.50089 1.49093 1.31775 1.05068 1.23442 1.00703 0.98123 0.79281 1.20146 0.83579 0.86821 0.91877 1.86048 1.34054 1.28124 1.91736 1.21732 1.29942 0.93613 1.13933 0.91198 1.25684 0.96621 0.95029 0.99268 1.69369 1.45919 0.98350 1.41885 0.85450 0.78979 0.77487 0.79068 1.19639 1.19762 1.21069 1.24104 0.95185 0.88877 0.94359 0.92509 0.88957 0.91816 0.92485 0.88905 0.93183 0.90731 0.90237 0.83399 0.83278 0.83548 0.83992 0.92743 0.88131 0.75742 0.91484 0.89153 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 7.71 71.98 0.55 -2.53 16 2 C -0.06 -1.53 0.56 -52.93 -0.03 -1.56 16 3 C -0.14 -3.43 7.63 71.98 0.55 -2.88 16 4 C -0.06 -1.19 3.77 29.85 0.11 -1.07 16 5 C -0.04 -0.63 4.02 -19.81 -0.08 -0.71 16 6 C -0.12 -1.43 7.87 22.23 0.18 -1.26 16 7 C -0.06 -0.70 9.76 22.54 0.22 -0.48 16 8 C -0.05 -0.68 5.73 -21.36 -0.12 -0.80 16 9 C 0.28 5.16 15.33 88.33 1.35 6.51 16 10 N -0.47 -11.21 18.54 19.01 0.35 -10.86 16 11 C -0.06 -0.77 9.76 22.54 0.22 -0.55 16 12 C -0.12 -1.61 7.99 22.23 0.18 -1.43 16 13 C 0.53 19.24 6.72 87.66 0.59 19.83 16 14 O -0.60 -25.50 16.71 -3.04 -0.05 -25.55 16 15 N -0.63 -24.30 3.51 -840.29 -2.95 -27.25 16 16 C 0.11 4.48 8.23 86.48 0.71 5.20 16 17 C 0.22 9.90 1.44 -10.88 -0.02 9.88 16 18 O -0.59 -29.47 13.48 -148.98 -2.01 -31.48 16 19 C -0.55 -26.52 8.62 25.60 0.22 -26.29 16 20 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 21 C 0.03 1.64 5.40 84.65 0.46 2.10 16 22 N -0.91 -44.20 11.08 21.44 0.24 -43.97 16 23 Si 0.96 38.09 29.54 68.60 2.03 40.11 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.10 3.78 5.69 86.48 0.49 4.27 16 28 H 0.06 1.39 5.66 -2.39 -0.01 1.38 16 29 H 0.09 1.52 6.19 -2.39 -0.01 1.51 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.09 1.74 6.55 -2.39 -0.02 1.73 16 33 H 0.05 1.45 5.48 -2.39 -0.01 1.44 16 34 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 35 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.15 1.44 8.03 -2.91 -0.02 1.42 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.72 8.02 -2.91 -0.02 1.70 16 40 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 3.82 8.09 -2.39 -0.02 3.80 16 42 H 0.39 19.70 6.46 -74.05 -0.48 19.22 16 43 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 44 H 0.09 3.32 7.73 -2.39 -0.02 3.30 16 45 H 0.07 2.81 6.00 -2.39 -0.01 2.80 16 Total: -1.00 -60.42 371.31 3.74 -56.68 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.55 Total: 34.09 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.59 Total: 8.22 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.36 Total: -82.08 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -2.06 Total: -57.02 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.11 kcal Total: -60.42 3.74 -56.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456007036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.845 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds